mRNA_S-dermatodea_contig9132.17208.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9132.17208.1
Unique NamemRNA_S-dermatodea_contig9132.17208.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9132.17208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9132contigS-dermatodea_contig9132:4319..6504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-02_002560.1
Exons3
Model size338
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9132.17208.1prot_S-dermatodea_contig9132.17208.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9132 4319..6504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925389.0062625-CDS-S-dermatodea_contig9132:4318..45011622925389.0062625-CDS-S-dermatodea_contig9132:4318..4501Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9132 4319..4501 +
1694079900.3332372-CDS-S-dermatodea_contig9132:4318..45011694079900.3332372-CDS-S-dermatodea_contig9132:4318..4501Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9132 4319..4501 +
1622925389.0199833-CDS-S-dermatodea_contig9132:4822..49181622925389.0199833-CDS-S-dermatodea_contig9132:4822..4918Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9132 4823..4918 +
1694079900.344283-CDS-S-dermatodea_contig9132:4822..49181694079900.344283-CDS-S-dermatodea_contig9132:4822..4918Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9132 4823..4918 +
1622925389.0313694-CDS-S-dermatodea_contig9132:6447..65041622925389.0313694-CDS-S-dermatodea_contig9132:6447..6504Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9132 6448..6504 +
1694079900.3561118-CDS-S-dermatodea_contig9132:6447..65041694079900.3561118-CDS-S-dermatodea_contig9132:6447..6504Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9132 6448..6504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9132.17208.1

>prot_S-dermatodea_contig9132.17208.1 ID=prot_S-dermatodea_contig9132.17208.1|Name=mRNA_S-dermatodea_contig9132.17208.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
MSAAATAAAAAVEARSRDLEERWGARERDFTSRWAAREKEFNERWTARER
EFNKMRREESKEFTRGMRTMLFEAHQALIASNAWLVERLKAVELQSSQVR
PPPPRSSTNLTS
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mRNA from alignment at S-dermatodea_contig9132:4319..6504+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9132.17208.1 ID=mRNA_S-dermatodea_contig9132.17208.1|Name=mRNA_S-dermatodea_contig9132.17208.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2186bp|location=Sequence derived from alignment at S-dermatodea_contig9132:4319..6504+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGGCGGCAGCTACTGCGGCGGCGGCAGCGGTTGAGGCTAGAAGCAG
GGACTTGGAGGAGCGGTGGGGTGCGAGGGAGAGGGACTTCACGAGCAGGT
GGGCTGCGCGGGAGAAGGAGTTCAACGAGAGGTGGACGGCACGAGAGCGA
GAGTTCAACAAGATGCGGCGGGAGGAGTCCAAGGTAATCTCCGGATAGAC
GTTAGTCTAAGGTGACCCTCTTTTTCGGTCAAGGTGCCGTGAAAGTGCGC
TCTTTGCCCCCCGACTGACGACACAATGTAACAGGCCCACAGGTCATCCC
GTTACGGGATATATGCATAGTAGCTCCGATGCGCATTCGTGCCAAGGAGG
CCGAAAGGTATCAAGTGTTGAGCGCGGGGTTTATACGTGGGGCACCTGCG
GTCCTCGTCGGCGAGAATCTCGCGCTCGATACGGTAGCAGTGATGCCCCG
ATCTGACTTGTCTCTTGCTCCCCGTTTCCCGTGTGCGGCTTGTTTTTACC
GCAGGAGTTCACACGAGGAATGCGCACGATGCTGTTCGAAGCCCACCAGG
CCCTCATCGCGTCAAACGCCTGGCTGGTGGAAAGGCTGAAGGCGGTCGAG
GTGTGCGAAATACCGCGGAGGCGTTTTGATTTTCGTTGTCGTGTTGCCCC
ACGTTGCTCTTTCATCTTGTTCCGTTCTGTTTGATGTAGTGTAGGCACTC
GCTAGGTAGACAGCAGCTAGCTGCAGGATGATTTTTCGATCTCTTTTTTG
TTGGCGTACTTTGAATCCCGGGCGCTCCGATTCTGTCACTATCACCACGG
CGATACCATAGGAGCGGACAAGGGTTACCTTGAGACCACGACGGCCATTA
CCGTATTTACCATACATTTATTGCCATCATCAATCTTTTGTCTGGCAGCT
CGCTGCTGCTTGTGTGACTGCTGCTTGTGTGCACTGGTGCGTTGTTTATT
ATGCTGTCTCGAGAAGGTGCTATATATGTCCGTGGCGGCGGGGGCGACGT
GGGTGCTCGAGCGAACGCGCGAGCGAGCCGTGGTCGACCGCGGCCGAGCG
CGGCCGAGCGCGGCCGAGCGCGGCCGAGCGCGACCAAGCGCGACCGAGCG
CGACCGACCGCGGCCGAGCGGGGCGGGGATCGCGAGGCGGGGGCCGAGCG
CAACAATCAAGTGTGGCTACCTACTGCTGTACAGCTGTATCTTTGGCACT
CAGAAAAAAAAACGCTCAACACAAACATCAAGTTATGTGGCATCAAAAAC
CTTCTCTAAATCGCTATTAAAAATCATACAGATAACATGTGGGATTCGCT
GGACAGAATCCTTGTCTAAATCTTAATGAAAAAACGTACGTTTTTGTATT
AATTAATAAGATACAGTAGTGCTGTGGACGGCAGGCGTGCCTGTAGCAGG
TGCGCTGCTCGTCACGGCAATAAATCCCTGCCGTGTGATGATGCCCACAC
GCCTTTTCTTCGCACGCGTACGAAAGCCCTTTTGTTAGACTCCGGAGCAC
TCGCATATGCCGTGGGAGCCCTGGCGCTTCTTCCCGAGCAAGTCCAATGC
CATTTTCGCATGCTGGCATCCTGACCCTTACCGCAAGTTAGAGCTCGCCA
TCCGCTGTGTCTCGTTCCCCGGTAGTATTACTGGGAGATGAGAAGTGGCC
TGAGACGGTGAGAATTGATGTAGACAGGATAAGAAAGGCAGTTTTTCTCC
ACCGTTAGCAAAGTAGGAAGGAAGGATCGATTGGTCATCAGCGATCGATC
GATCCGTCGGGACAAAGCTCCTTCTCCTTCCTCCCGTCCTCCCGAGGACA
GACGCGTGGCCAACGGCCTAACAGCTAAGGCATGCACAACTTGAGTACCC
CCCCCCCCCCCTTCCCCAGCCGGAGGAAGGCGGTAGCTATACTGGGGAAT
AAGAAGTGGCCTGAGAAAGCGAGAAATTATGTAGACAGGACAGGAAAACA
TTTTTGCGCTACTTTTGGCAGAGTAGGAAGGATTGGCCATCGGCGATCGA
TCCTGTGGGAAAACTGCTCCGTCCTCTCGAGGACATGTGGCCACTGGTCT
AACAGCTAAGGCATGCAAAACGTAAGTACGCCACGCCCCCCCCCCCCCCC
TACCCCTACCCCCCCACTCTGTGCGGTAGCTGCAGTCCTCACAGGTAAGA
CCCCCTCCCCCCAGATCGAGCACCAACTTGACGTCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig9132:4319..6504+

>mRNA_S-dermatodea_contig9132.17208.1 ID=mRNA_S-dermatodea_contig9132.17208.1|Name=mRNA_S-dermatodea_contig9132.17208.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig9132:4319..6504+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGGCGGCAGCTACTGCGGCGGCGGCAGCGGTTGAGGCTAGAAGCAG
GGACTTGGAGGAGCGGTGGGGTGCGAGGGAGAGGGACTTCACGAGCAGGT
GGGCTGCGCGGGAGAAGGAGTTCAACGAGAGGTGGACGGCACGAGAGCGA
GAGTTCAACAAGATGCGGCGGGAGGAGTCCAAGATGTCGGCGGCAGCTAC
TGCGGCGGCGGCAGCGGTTGAGGCTAGAAGCAGGGACTTGGAGGAGCGGT
GGGGTGCGAGGGAGAGGGACTTCACGAGCAGGTGGGCTGCGCGGGAGAAG
GAGTTCAACGAGAGGTGGACGGCACGAGAGCGAGAGTTCAACAAGATGCG
GCGGGAGGAGTCCAAGGAGTTCACACGAGGAATGCGCACGATGCTGTTCG
AAGCCCACCAGGCCCTCATCGCGTCAAACGCCTGGCTGGTGGAAAGGCTG
AAGGCGGTCGAGGAGTTCACACGAGGAATGCGCACGATGCTGTTCGAAGC
CCACCAGGCCCTCATCGCGTCAAACGCCTGGCTGGTGGAAAGGCTGAAGG
CGGTCGAGCTGCAGTCCTCACAGGTAAGACCCCCTCCCCCCAGATCGAGC
ACCAACTTGACGTCTCTGCAGTCCTCACAGGTAAGACCCCCTCCCCCCAG
ATCGAGCACCAACTTGACGTCT
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