mRNA_S-dermatodea_contig911.17187.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig911.17187.1
Unique NamemRNA_S-dermatodea_contig911.17187.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig911.17187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig911contigS-dermatodea_contig911:5495..5947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925387.419618-CDS-S-dermatodea_contig911:5494..56811622925387.419618-CDS-S-dermatodea_contig911:5494..5681Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig911 5495..5681 -
1694079899.291899-CDS-S-dermatodea_contig911:5494..56811694079899.291899-CDS-S-dermatodea_contig911:5494..5681Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig911 5495..5681 -
1622925387.430006-CDS-S-dermatodea_contig911:5888..59471622925387.430006-CDS-S-dermatodea_contig911:5888..5947Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig911 5889..5947 -
1694079899.301712-CDS-S-dermatodea_contig911:5888..59471694079899.301712-CDS-S-dermatodea_contig911:5888..5947Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig911 5889..5947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig911.17187.1prot_S-dermatodea_contig911.17187.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig911 5495..5947 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig911.17187.1

>prot_S-dermatodea_contig911.17187.1 ID=prot_S-dermatodea_contig911.17187.1|Name=mRNA_S-dermatodea_contig911.17187.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=82bp
ERSPSIVLPLSPKERQFSSRRRSPARTADREAGGRSQGAWALCCYFLSWN
CCEACSALVRAAAEGIKGGERPTRAAPLPGGK
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mRNA from alignment at S-dermatodea_contig911:5495..5947-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig911.17187.1 ID=mRNA_S-dermatodea_contig911.17187.1|Name=mRNA_S-dermatodea_contig911.17187.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=453bp|location=Sequence derived from alignment at S-dermatodea_contig911:5495..5947- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGAGATCCCCATCCATTGTCCTGCCGCTTTCGCCGAAAGAGCGCCAATT
TTCTTCAAGGTAAAAAATATATTTTCAGCCAGCAGCAGCAGGTTTGACCA
TGCACCATGCACCGATCCGACATCCCTGTCTCTTTTTTTAGTGTGAGCCA
AAAGCTTGGCCGAATCACGCACGCTCCAGTCTCTGGTCTGACAAGATCTC
GCGGCTCCGAGCCCCCAACCCTAAACTAACTAACCGGAGGACCCGAACCA
CTTGGGGATCACGCAGGCGTCGGTCGCCTGCGCGCACCGCTGATCGCGAA
GCAGGAGGAAGGAGCCAGGGAGCGTGGGCGCTTTGCTGCTACTTTTTGTC
GTGGAACTGCTGTGAGGCTTGCTCGGCGCTCGTGCGAGCTGCGGCGGAGG
GAATAAAAGGGGGGGAGAGGCCGACGAGAGCTGCGCCCTTGCCTGGTGGA
AAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig911:5495..5947-

>mRNA_S-dermatodea_contig911.17187.1 ID=mRNA_S-dermatodea_contig911.17187.1|Name=mRNA_S-dermatodea_contig911.17187.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at S-dermatodea_contig911:5495..5947- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGAGATCCCCATCCATTGTCCTGCCGCTTTCGCCGAAAGAGCGCCAATT
TTCTTCAAGGAGAGATCCCCATCCATTGTCCTGCCGCTTTCGCCGAAAGA
GCGCCAATTTTCTTCAAGGCGTCGGTCGCCTGCGCGCACCGCTGATCGCG
AAGCAGGAGGAAGGAGCCAGGGAGCGTGGGCGCTTTGCTGCTACTTTTTG
TCGTGGAACTGCTGTGAGGCTTGCTCGGCGCTCGTGCGAGCTGCGGCGGA
GGGAATAAAAGGGGGGGAGAGGCCGACGAGAGCTGCGCCCTTGCCTGGTG
GAAAGGCGTCGGTCGCCTGCGCGCACCGCTGATCGCGAAGCAGGAGGAAG
GAGCCAGGGAGCGTGGGCGCTTTGCTGCTACTTTTTGTCGTGGAACTGCT
GTGAGGCTTGCTCGGCGCTCGTGCGAGCTGCGGCGGAGGGAATAAAAGGG
GGGGAGAGGCCGACGAGAGCTGCGCCCTTGCCTGGTGGAAAG
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