mRNA_S-dermatodea_contig90561.17141.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig90561.17141.1
Unique NamemRNA_S-dermatodea_contig90561.17141.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig90561.17141.1 vs. uniprot
Match: A0A7S3QIX9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QIX9_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.080e-6
Identity = 21/45 (46.67%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   34 FVPRKGAAVDAPEDYGYLASVLVNGRDRRTEVIILDAADVSKGPI 168
            F  RK  A +  ED GY+ S+L+NG+++++E++ILDAA +S+GP+
Sbjct:  522 FAQRKSDASNGEEDDGYIISILLNGKEKKSEIVILDAAKISEGPV 566
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BLAST of mRNA_S-dermatodea_contig90561.17141.1 vs. uniprot
Match: A0A1Z5K710_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K710_FISSO)

HSP 1 Score: 48.5 bits (114), Expect = 4.660e-5
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   34 FVPRKGAAVDAPEDYGYLASVLVNGRDRRTEVIILDAADVSKGPI 168
            + PRKG  V   E+ GY+ SVL +G+ + +E+IIL+A+DVS+GPI
Sbjct:  490 YAPRKGGEVS--ENSGYILSVLYDGKKKESELIILNASDVSRGPI 532
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BLAST of mRNA_S-dermatodea_contig90561.17141.1 vs. uniprot
Match: A0A547P8V6_9SPHN (Dioxygenase n=3 Tax=Erythrobacter TaxID=1041 RepID=A0A547P8V6_9SPHN)

HSP 1 Score: 47.8 bits (112), Expect = 8.690e-5
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   19 APQSTFVPRKGAAVDAPEDYGYLASVLVNGRDRRTEVIILDAADVSKGPI 168
            A +S  VPRKGAA    ED GYL + L++     +E+ ILDA+DV+KGPI
Sbjct:  415 ASESPMVPRKGAAS---EDDGYLVTFLIDENSGTSELAILDASDVTKGPI 461
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig90561.17141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3QIX9_9STRA1.080e-646.67Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5K710_FISSO4.660e-551.11Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A547P8V6_9SPHN8.690e-552.00Dioxygenase n=3 Tax=Erythrobacter TaxID=1041 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig90561contigS-dermatodea_contig90561:354..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925383.13808-CDS-S-dermatodea_contig90561:353..5211622925383.13808-CDS-S-dermatodea_contig90561:353..521Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90561 354..521 -
1694079896.2771652-CDS-S-dermatodea_contig90561:353..5211694079896.2771652-CDS-S-dermatodea_contig90561:353..521Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90561 354..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig90561.17141.1prot_S-dermatodea_contig90561.17141.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig90561 354..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig90561.17141.1

>prot_S-dermatodea_contig90561.17141.1 ID=prot_S-dermatodea_contig90561.17141.1|Name=mRNA_S-dermatodea_contig90561.17141.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=56bp
PRPPPSAPQSTFVPRKGAAVDAPEDYGYLASVLVNGRDRRTEVIILDAAD
VSKGPI
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mRNA from alignment at S-dermatodea_contig90561:354..521-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig90561.17141.1 ID=mRNA_S-dermatodea_contig90561.17141.1|Name=mRNA_S-dermatodea_contig90561.17141.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at S-dermatodea_contig90561:354..521- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCGCCCCCCCCCCTCCGCTCCGCAGTCCACCTTCGTCCCTCGCAAGGG
CGCCGCCGTGGATGCGCCCGAAGACTACGGATACTTGGCGAGCGTTCTGG
TCAACGGGCGGGATCGCCGCACGGAAGTGATCATCCTTGACGCGGCCGAT
GTGTCTAAGGGCCCCATC
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Coding sequence (CDS) from alignment at S-dermatodea_contig90561:354..521-

>mRNA_S-dermatodea_contig90561.17141.1 ID=mRNA_S-dermatodea_contig90561.17141.1|Name=mRNA_S-dermatodea_contig90561.17141.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at S-dermatodea_contig90561:354..521- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCGCCCCCCCCCCTCCGCTCCGCAGTCCACCTTCGTCCCTCGCAAGGG
CGCCGCCGTGGATGCGCCCGAAGACTACGGATACTTGGCGAGCGTTCTGG
TCAACGGGCGGGATCGCCGCACGGAAGTGATCATCCTTGACGCGGCCGAT
GTGTCTAAGGGCCCCATCCCCCGCCCCCCCCCCTCCGCTCCGCAGTCCAC
CTTCGTCCCTCGCAAGGGCGCCGCCGTGGATGCGCCCGAAGACTACGGAT
ACTTGGCGAGCGTTCTGGTCAACGGGCGGGATCGCCGCACGGAAGTGATC
ATCCTTGACGCGGCCGATGTGTCTAAGGGCCCCATC
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