mRNA_S-dermatodea_contig9045.17126.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9045.17126.1
Unique NamemRNA_S-dermatodea_contig9045.17126.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9045.17126.1 vs. uniprot
Match: D7FZ77_ECTSI (Inosine triphosphate pyrophosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ77_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 4.300e-21
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:  103 LVLSPADQALREKEARSRVDEDTMKSSRPNVTEEMARSLVETVFGKDVASIARLDSYDDSNFRVVEAG-GETFTLK 327
            + LSPAD  L EKEAR+R DED  K SRPNV+EE A SLV  +FGK+V+S+ARLDSYDD+NF++VEAG GETFTLK
Sbjct:    1 MALSPADVCLLEKEARAREDEDKRKHSRPNVSEETAGSLVTRLFGKEVSSVARLDSYDDANFKIVEAGSGETFTLK 76
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9045.17126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ77_ECTSI4.300e-2169.74Inosine triphosphate pyrophosphatase n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9045contigS-dermatodea_contig9045:2693..8092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.5e-19
Seed eggNOG ortholog2880.D7FZ77
KEGG rclassRC00002
KEGG koko:K01519
KEGG ReactionR00426,R00720,R01855,R02100,R02720,R03531,R08243
KEGG Pathwayko00230,ko00983,ko01100,map00230,map00983,map01100
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576
EggNOG free text desc.NADH pyrophosphatase activity
EggNOG OGsCOG0127@1,KOG3222@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size477
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9045.17126.1prot_S-dermatodea_contig9045.17126.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9045 2789..7999 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925381.8403325-UTR-S-dermatodea_contig9045:2692..27881622925381.8403325-UTR-S-dermatodea_contig9045:2692..2788Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9045 2693..2788 -
1694079895.39939-UTR-S-dermatodea_contig9045:2692..27881694079895.39939-UTR-S-dermatodea_contig9045:2692..2788Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9045 2693..2788 -
1622925381.889477-UTR-S-dermatodea_contig9045:7999..80921622925381.889477-UTR-S-dermatodea_contig9045:7999..8092Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9045 8000..8092 -
1694079895.4546359-UTR-S-dermatodea_contig9045:7999..80921694079895.4546359-UTR-S-dermatodea_contig9045:7999..8092Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9045 8000..8092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925381.8562438-CDS-S-dermatodea_contig9045:2788..28371622925381.8562438-CDS-S-dermatodea_contig9045:2788..2837Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9045 2789..2837 -
1694079895.418905-CDS-S-dermatodea_contig9045:2788..28371694079895.418905-CDS-S-dermatodea_contig9045:2788..2837Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9045 2789..2837 -
1622925381.8687167-CDS-S-dermatodea_contig9045:6190..63301622925381.8687167-CDS-S-dermatodea_contig9045:6190..6330Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9045 6191..6330 -
1694079895.430765-CDS-S-dermatodea_contig9045:6190..63301694079895.430765-CDS-S-dermatodea_contig9045:6190..6330Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9045 6191..6330 -
1622925381.879358-CDS-S-dermatodea_contig9045:7900..79991622925381.879358-CDS-S-dermatodea_contig9045:7900..7999Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9045 7901..7999 -
1694079895.443275-CDS-S-dermatodea_contig9045:7900..79991694079895.443275-CDS-S-dermatodea_contig9045:7900..7999Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9045 7901..7999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9045.17126.1

>prot_S-dermatodea_contig9045.17126.1 ID=prot_S-dermatodea_contig9045.17126.1|Name=mRNA_S-dermatodea_contig9045.17126.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=96bp
MTSLVLSPADQALREKEARSRVDEDTMKSSRPNVTEEMARSLVETVFGKD
VASIARLDSYDDSNFRVVEAGGETFTLKERSTTASRPATRPSSWR*
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mRNA from alignment at S-dermatodea_contig9045:2693..8092-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9045.17126.1 ID=mRNA_S-dermatodea_contig9045.17126.1|Name=mRNA_S-dermatodea_contig9045.17126.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5400bp|location=Sequence derived from alignment at S-dermatodea_contig9045:2693..8092- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGAACGTTTTTTGCGAGCTGCTCGGCGCGATACCCAAGACACACACACA
CACACACACACACGTCGCCCTAGGTTGCCGCCTTTCTTCGACAATGACCT
CCTTGGTGCTGAGCCCGGCGGACCAGGCTCTTCGTGAGAAGGAAGCAAGG
AGCAGGGTGGACGAGGACACGATGAAGTCTTCCAGGCCGAACGTGGGTTT
TTCGTTCACTTTTGCTCTTTTTTGTCGTATCCTATACTTCGACGTATACT
GTTTCCGAGAGTTAGTTTATGTCAATTCCTTTTTTGTATGTACGATACAT
CATAGGTAGTCCCGTAGTTTTTTTTTCTTGATCTCCCGATTTTTTCTCAT
GTGACCACGAACGGGATCGGCAACCATTGGTGGGCCGGTTGGTTGTATGA
GTGATAATAATATTAATAATACTAATAATAATAATTGTATGTATGTCGTT
TTTACTTATTGTTTTGCTTCGAGGCATGTATGTATTTTTTAATTCGCTCT
TTGGAGGAGGGAAATTCTGTCCATAAGACTTGATTGATTGAATGATTGAA
GGATGATTGATTGATTGATGGATTGATTAGCACACGTAAGTCACGATTGC
CACACTGTTAAGGCTGCAGCGTACATTCAGAATGGGATGGTTCCGGACAA
CCCCATATGGCGACACAGGGAATCCCCGATCGCCAAACTTTCGCTCGACG
ACTCCTTTCATGTTCAAGTACGTCAATGAGCGCGCACCTTGCGAGGCGCC
GTTCTGTCCATGTTCGAACCCCCCTCCCCAGCCTCCACGCGCGCCTGGCG
CGCGCGCAGCTTCCAAAGTCCATCTCATTGGTGCAGAAGTGGCAGTCTAG
GCTGGTGGAGCGGCGTTTTAGCGGGGGTTTCAAATGTAGCCGCACTTGGG
GTCCACCGGAAAGCGGGGATGCGGGGACAGAACGTGTGCACCACACCCTT
AAACTGTTATTGTATTGTTACACCATCATAGCTGCTGTTACACCATCACC
ATCATAATTATCTTGATGGTGCCGCCGTTGTGCAGCTTTCGTTTTGTCTT
TCTGATCGTAATATCGCTATATCATGTTGCCACTATGTTCGTGTGAGCAC
TGCTACCAGTGATGGTTGCGTAGTGCTGAGCATCTTACATGCTTGATAGG
AGATAATATGTCGCTATTGGGTGCAGGCAGAGTGTATGACGGTTACATAC
CGATCTGATACTTCGGGCCATTGGGTGATATTCAGGGTTACTTATCCGGG
ATATTTATGTTATGCCGTGTCGGATGGTAGGTGCCTGGATGTACGCGCCT
GTGCTCACTCCGTTCCGAGACGCACCAGCGAGCAATGATCGATACAGTAC
CTTCTTCTTTCTCCATTGATCGGCTACCGAGCCGTGTCCTACCACTATAC
CATCTACGGAATCACTCAACACACTATCATACTGTTATCGTATTGTCATA
CATGATCATATAACTATAGTAGTATAATAGGTAGCCACGGCTACGCCCGC
GAGGTAAAATATCCTACTATTTTCAGCACTTGGCGCTCAACACAAGCACA
TCAAGTTGTTTGGCCTCAAAATCGCATACTTGTAGGAGTTTAGTGTACAA
AAATCGGCCTTAAAAAATAAAAATCGACCTAAAAAAATCGTATAGGAAAT
AGTATAGAAAACACGTTCAAAGCGGCATTACTACTGTATTTTTTAATAGA
ATATATTGTAAAATTGCTTATTTCACTTTCATGCTGGTATTACTGTATGT
ATTCTACAATAGGTTACCGAGGAGATGGCGAGGTCTCTGGTGGAGACGGT
TTTCGGGAAGGACGTTGCCTCGATCGCGAGGCTCGACAGCTACGACGACA
GCAACTTCCGGGTGGTGGAGGCCGGGGGCGAGACCTTCACCCTCAAGGAA
AGGTTTCCGTCACGCCCGCAGGATGCAGTTCTGGGTTGTTTTTTGTTTCG
TTGTCTCGCGCTCGTTTGTCTCTGTCCGTGGTGTTTACTCTTTTGGGACT
GAACCTATTAATACTATTAATATTACGCGGGACCATAGTTAACAGGTCCA
AATTTGCCACAAGTCTCAACCTAAAAATATCAAAATAGGCTGGAATTATC
CAGATTTCAAAGTCGATGTTCTTGTGCATGGCCGTATCTCGTGTCTTTGT
TTGTTTTTCTTGAGATTTTTGTTGTTTTGGGTATTCATGTTCGGAATAGT
TGGGTATTCATGGTCATGACATTTGATCCTGGTTACTTGATTATAGTGTA
CCTCCGTAATAGTATAATATACTGTTTTCGGGGTTAGATCGTCCGCCCCC
ACCCTATTTCACACCTAAGAGCGATCGGACGGTGGCTACTATATACTGTA
TACCATACAGTACATTCTATATACTATACACTCCCCTCGCTGTAATGGTG
GTGGAACACCGATTTCAAAACTGTCGAGATGTGCATGATGGCCGTCTTGA
CTATAACCCGATCAAGACACGATATGGCCAGCTTGCCCTGATTCGTTGCC
GTTCAAAAGATGTGTATCAGAGGATACTTTACGTTCTTCTTGTTATGATA
GGCCCAGGTTGTACTTGTACAAGCCGTTGTACAGCAGAAAATACAAATAC
TACATACGGTACAGCGGCAGGAGTCAGAGTAAAAGTGTACACATACATGT
AGTTATGCAGCAGTAGTCAACGGGGAAAAAAACACCGGGAGTACAGACAT
CAGTAAAGGCAGCTCATGAATCATACCTGCGGCATGTATTGACGAGTTCT
CCTCGACGTGGACCCAGCATGCAGCAGCATCGGCTTCGGCCCGCCCTTGC
ATCCACGAGCAGAGAGGAGTCATCGGAACCCTCGGCCCCCAGCCCCTTAC
CAACCGCCTTCTCCAGCTCATGCACCTTCTCTTGCAGCGACTCCGCCGTC
TCCTGCTTCGACTCCGCTGCCTACTCTTTTAACACTCGGCGGGATCCTGC
TCTGACTCCACGCGCCCCCCCCCTATGCCGCAGGCTTCGAAATTGCAAAC
GCAGAGAGAGCTGGCCGATGCGTGCTCTTCGTCAGAGTTCGGCGGCTTTT
CGATTCGGGTCCCTCTTTACCGACACGTCGTTGTCTAGTGTGCCTGGGGC
GTGTTAGTGGCCTCCTCGGACACCTGATGTGTGCGTTGTCGTGTTTGCCT
CATATGGCGATGTGCCGAGACAACCGGGACAATGTCCACCAATGAGACGA
TTCCGGAGATCTTTCTCAAAAACGTTTCCGGCGTACCACACATTGCGAAA
CCGCAACACAAACATAAAATTGTCCAACATGGGTTGTTCGTACTGAGTAG
GTGCCTGAAATGAAATTCCTTAATATGAAGCCGATGCCTCAAACACGTTG
GAGCCATGCGTTTAACCCTTATGGGACCAAGCCTGTCTTCAGTGTTAGGC
CATCTGCCCGCACTATAGCTCGCATGGAACAGGTAGAGTACCCGAACGGT
GGCTACTATATACTGTATACTATATAGACATCTGCCCGCACTATGCCTCA
CATGGAACAGGTACAGTAGTACCCGAACGGTGGCTACTATATACTATATG
CTACACAGACATCTGCCCGCACTATACCTTACATGGAACAGGCACAGTAC
CCGAACGGTGGCTACTATATACTCACAGATGGCCTATTAGTAACCCCCAA
AACAGGCTCAGTCCCAAAGGGGTTAAGCGCGTCGGGGTAGCTTAGTTCAT
CTAGCGCCACGATCAGGGCCTCGTTGCTGGAGATGCAACCGTCATGGATC
TCCGTTGTTTCTTGTTTTCACGCATTTTGTAGTGTTTTCGGAACAAGTTC
CGTTTCCCTTTTTTCAGGGCCCTTCACGTGCCCGGCAATTTCTGACTGTG
CCGAATCTGTGCCGGCTAAAAGTCTGACAGTGCCGATCCAGTGCCGGCTG
GGAGAAAATAAAATCAGACAGAGCCGAACCAGTGCCGGTTGGAAGAAGAA
AAAATCTGCTGCTGTAGTGCCGAACCGAAAACAAGCGCTGGGCATGGGCT
GGTGAAAAGGCACGTGCATTTGCTGGGTATGCGCAAGGCCCTGGGGGTTT
GTATAGGGAGGGAGGGAAGGGGGTTGGGAGGGAGCTTAGAACCATCATTT
TTGGAGGCCTTAAAACCAGACTATTAATAGTAGGTAGCCACGGCTATAAT
ATTAATAGTATAATAATACGCCCGTGAGGTAAACATCGTACTCTTTTCAA
CACTTGGCGCTCAACACAAACACCGAGTTGTTTGGCATCACTTTTTCCTG
TAGGATTCCGGTGACGCAGTATCTATCGCCCCTTTGAAATCGCTATTAAT
AATCTCGGTCATCAGAGCGCGCTATTATTAATTAATTAATAGTAAAGATT
CTGCTTACTTTTAACATTCCCTTTCGGGACTTGAGCCTGTTTTCGGGGCC
ATCTGCTAGCACCGCACAGTAGTGTATCTATTTCACATCGAACCATCGAA
CCGTTATCATACCGATCGGTACCTACTCCTCCCCGGACATGGCGGGGGTG
GGAGTTTTGATAAAAACCGACCCAGCTTAGCTTGCGTGCACGGTGTGTGC
GGTCGTCGTGCGTGCGTGCAGCACCCTTCGCCGCGATGACCCGTAGTTCG
GAGTGATGTTCGGCGCTGAAGCGGGACTAAATACTCTAAAACACAAGCTT
TTTAAATATTTTTGGGACTTGAGTTCGTCTAACGAACGGGGATCCACCTC
TGCCCGCAACTTTAGTTCGCGTCGAACAGCTACTGAACAGCCACGGCTAC
TTTTCGCCCTTGTACAAGTATCATAGTGGCGGTAGAAGAGCGGCCTCGCG
CCACGCTTGCAGTAGTAGCACGCATGCTCTTTCTAGATTTCATGGTCGAC
GTTGTTGTGTATGACAACATCTCGTGTTGTGTCTTAATAACGAGACCCTT
TTTGGTTGTTTTGTGGGTATTCATGGTCGGAGAAGTTTGCGTAGTCATGA
TCGTGATATTTTGTGATATTTTGTCCTGATTACTGTGTGCCTCCGTGATC
GATCGCATTTTTTTTAGTTGGCCCTTGATGCCGAAAGAGGCTTTTACAGG
GTACAGTAGTCTTTTGTGTCAAAGCCTTTTTCATTCGGATAGTTTTTTCC
GGTTCGCCCGTTCGCCCACACCCACACCACGAGACACCACCTACACCGCG
CGCCCCCGCTCGCTCCACCGCGCATCCTATAAACGTTTTACCTCACGGGG
GTAGCCGTGGCGGCAACCCGCGTTTTTGTGTTCTTTTTCTTTTTTTCTTT
TTCAGATCCACAACGGCTTCACGTCCGGCAACGAGGCCCTCATCGTGGCG
CTGAACCACATCGTCCTCTTCGCGTCGAGTCACGGCTTCTGCGTCCCCGT
CCCGGTCCGCGCGAGAGGAGGCGGACTGGTCGAGACGAACAGCCTTCCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9045:2693..8092-

>mRNA_S-dermatodea_contig9045.17126.1 ID=mRNA_S-dermatodea_contig9045.17126.1|Name=mRNA_S-dermatodea_contig9045.17126.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at S-dermatodea_contig9045:2693..8092- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACCTCCTTGGTGCTGAGCCCGGCGGACCAGGCTCTTCGTGAGAAGGA
AGCAAGGAGCAGGGTGGACGAGGACACGATGAAGTCTTCCAGGCCGAACA
TGACCTCCTTGGTGCTGAGCCCGGCGGACCAGGCTCTTCGTGAGAAGGAA
GCAAGGAGCAGGGTGGACGAGGACACGATGAAGTCTTCCAGGCCGAACGT
TACCGAGGAGATGGCGAGGTCTCTGGTGGAGACGGTTTTCGGGAAGGACG
TTGCCTCGATCGCGAGGCTCGACAGCTACGACGACAGCAACTTCCGGGTG
GTGGAGGCCGGGGGCGAGACCTTCACCCTCAAGGAAAGGTTACCGAGGAG
ATGGCGAGGTCTCTGGTGGAGACGGTTTTCGGGAAGGACGTTGCCTCGAT
CGCGAGGCTCGACAGCTACGACGACAGCAACTTCCGGGTGGTGGAGGCCG
GGGGCGAGACCTTCACCCTCAAGGAAAGATCCACAACGGCTTCACGTCCG
GCAACGAGGCCCTCATCGTGGCGCTGAATCCACAACGGCTTCACGTCCGG
CAACGAGGCCCTCATCGTGGCGCTGA
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