mRNA_S-dermatodea_contig9017.17105.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9017.17105.1
Unique NamemRNA_S-dermatodea_contig9017.17105.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9017.17105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9017contigS-dermatodea_contig9017:7387..8631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925380.5269303-CDS-S-dermatodea_contig9017:7386..76531622925380.5269303-CDS-S-dermatodea_contig9017:7386..7653Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9017 7387..7653 -
1694079894.5127218-CDS-S-dermatodea_contig9017:7386..76531694079894.5127218-CDS-S-dermatodea_contig9017:7386..7653Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9017 7387..7653 -
1622925380.5413241-CDS-S-dermatodea_contig9017:8610..86311622925380.5413241-CDS-S-dermatodea_contig9017:8610..8631Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9017 8611..8631 -
1694079894.5299015-CDS-S-dermatodea_contig9017:8610..86311694079894.5299015-CDS-S-dermatodea_contig9017:8610..8631Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9017 8611..8631 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9017.17105.1prot_S-dermatodea_contig9017.17105.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9017 7387..8631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9017.17105.1

>prot_S-dermatodea_contig9017.17105.1 ID=prot_S-dermatodea_contig9017.17105.1|Name=mRNA_S-dermatodea_contig9017.17105.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=96bp
RRRKPACSRSGRRCSCFCSNQRQTPRRRAAALPQIAYLATCTLGRRRRRT
SVRNQRQRRRRRRKDLQNPSRRRTAAAYRCDRRRLTRQGRRETFLA
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mRNA from alignment at S-dermatodea_contig9017:7387..8631-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9017.17105.1 ID=mRNA_S-dermatodea_contig9017.17105.1|Name=mRNA_S-dermatodea_contig9017.17105.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1245bp|location=Sequence derived from alignment at S-dermatodea_contig9017:7387..8631- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCGGCGGAAGCCCGCGTGTGTGAGTGGAAACAATTTTCTGGTGTTCCT
TTTTTCTTGGCGTTCGTGCTGTGCCCCCTTGGAGTTTTGCGTCCGTACAT
TCTCGGATCGGTGCGATTGTGTTTATGCCCTGTTTGGATTCCGGTGCGTA
AGCTTGGGACACCTCGTTTAGTTTCTGTTTTTGCGGCGAGTTGCACGCCG
GTGCGGTGTATATACAATACGTATGGAGCCTCGGGGCTTCGGAAAGCGCA
GTCCTCCGTGCTGTGGCCTATGAAAATAATGATAAAACCATAGTTGAAGC
TAGCGTTGAGTACTGTAGCCTCTTTCCGCCTAGAAAAGAAACATCTCAAG
TTAGTTGTTTGTTCGCTCTTGAGGGCTCGGATAACTCAGTTCGGAATCCT
GCGTTTTCCGAGCTCCGTCCTGCTGTTGTGTGTGGCGTCATGTGCATAAG
AAAATCTGCAGCATATCGATTCCTTAGCGAGGTTCGTGTTGTGCGTTGAG
CTATTATAGTCCGAGGTATCATCAGCGTTGCGTTTCTTCCCTTGCTGGAT
TGGCGTGTCTTGCTCCTGCTGCTGCTATTGCACGGGTGATGATGGGTGTT
GTGTGCCGCGTACCTTACCCCCCGACATGATTTTCCTCGGAGCTTTCGCT
ACGCTATCGTACTTGTGATGGATTGCGACCGATGTTGCTGGTACGAGAGC
CGCAAACGTCTTGCCACACTGCTACAACATCGCCAGTCAAGTCCCACGCA
CCCCGTTTGATTGATTGGTTGATTGATCATCACACTTACAACCGACCGGC
CCACCAATGGCTACCGCAGCATCAGCTTTAGTGCCCGGGTACGGTTGCCT
CGTGTGACACGTGCGCTGGTGTAAGCCCGGCAAGACCGCCAGTAACTGCT
TCACGAACTTCCGCCCACATATCGTCTCAAATCGCGTGCTCGGCCGTTCA
CCGCTACACGACTTCACTCGTACCGCAGTCGAGGAGCGGCAGGCGATGCA
GTTGCTTCTGCAGCAATCAGCGGCAGACTCCTCGGCGGCGAGCAGCAGCT
CTCCCACAAATAGCATATCTGGCAACGTGCACGCTCGGACGGAGGCGCCG
GCGAACCAGCGTCCGGAACCAGCGCCAAAGAAGAAGAAGAAGAAGAAAGG
ATCTCCAGAATCCAAGCCGCCGGAGAACCGCGGCGGCGTACCGTTGCGAC
CGCCGGCGCCTGACTCGGCAAGGTCGCAGGGAAACGTTTCTCGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9017:7387..8631-

>mRNA_S-dermatodea_contig9017.17105.1 ID=mRNA_S-dermatodea_contig9017.17105.1|Name=mRNA_S-dermatodea_contig9017.17105.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at S-dermatodea_contig9017:7387..8631- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCGGCGGAAGCCCGCGTGTCGGCGGCGGAAGCCCGCGTGTTCGAGGAG
CGGCAGGCGATGCAGTTGCTTCTGCAGCAATCAGCGGCAGACTCCTCGGC
GGCGAGCAGCAGCTCTCCCACAAATAGCATATCTGGCAACGTGCACGCTC
GGACGGAGGCGCCGGCGAACCAGCGTCCGGAACCAGCGCCAAAGAAGAAG
AAGAAGAAGAAAGGATCTCCAGAATCCAAGCCGCCGGAGAACCGCGGCGG
CGTACCGTTGCGACCGCCGGCGCCTGACTCGGCAAGGTCGCAGGGAAACG
TTTCTCGCGTCGAGGAGCGGCAGGCGATGCAGTTGCTTCTGCAGCAATCA
GCGGCAGACTCCTCGGCGGCGAGCAGCAGCTCTCCCACAAATAGCATATC
TGGCAACGTGCACGCTCGGACGGAGGCGCCGGCGAACCAGCGTCCGGAAC
CAGCGCCAAAGAAGAAGAAGAAGAAGAAAGGATCTCCAGAATCCAAGCCG
CCGGAGAACCGCGGCGGCGTACCGTTGCGACCGCCGGCGCCTGACTCGGC
AAGGTCGCAGGGAAACGTTTCTCGCG
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