mRNA_S-dermatodea_contig900.17090.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig900.17090.1
Unique NamemRNA_S-dermatodea_contig900.17090.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig900.17090.1 vs. uniprot
Match: D7G6E2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E2_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.090e-24
Identity = 74/124 (59.68%), Postives = 86/124 (69.35%), Query Frame = 1 
Query:    1 LSDPQAAPRAHRALST--DQAAELDSQLASLQEVSTAADLAGRGLRSEAAPLLERAVEICTASMGEDSALARAALHRQAAVL---RRFDEVEAALTRGRSGAGKRFPVGAAELLLLSKAQVREG 357
            L   +A PR  R LS+  DQAAE ++QL SL EVSTA DLA  G R+EAA LLERAVEIC+ SMGED AL RAA+HR A VL   +RF   EA L +G S A K+FP    ELLLLSKAQ+ +G
Sbjct:    2 LLSQRAIPRMRRLLSSSSDQAAEANAQLESLHEVSTAVDLAALGRRTEAASLLERAVEICSGSMGEDCALTRAAVHRLAQVLYDDQRFGAAEAILRKGESNARKQFPT---ELLLLSKAQLFQG 122
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig900.17090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6E2_ECTSI1.090e-2459.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig900contigS-dermatodea_contig900:146..902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-10_001530.1
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925379.2322874-CDS-S-dermatodea_contig900:145..2591622925379.2322874-CDS-S-dermatodea_contig900:145..259Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 146..259 -
1694079893.5859733-CDS-S-dermatodea_contig900:145..2591694079893.5859733-CDS-S-dermatodea_contig900:145..259Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 146..259 -
1622925379.2503536-CDS-S-dermatodea_contig900:659..9021622925379.2503536-CDS-S-dermatodea_contig900:659..902Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 660..902 -
1694079893.6046538-CDS-S-dermatodea_contig900:659..9021694079893.6046538-CDS-S-dermatodea_contig900:659..902Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 660..902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig900.17090.1prot_S-dermatodea_contig900.17090.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig900 146..902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig900.17090.1

>prot_S-dermatodea_contig900.17090.1 ID=prot_S-dermatodea_contig900.17090.1|Name=mRNA_S-dermatodea_contig900.17090.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=119bp
LSDPQAAPRAHRALSTDQAAELDSQLASLQEVSTAADLAGRGLRSEAAPL
LERAVEICTASMGEDSALARAALHRQAAVLRRFDEVEAALTRGRSGAGKR
FPVGAAELLLLSKAQVREG
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mRNA from alignment at S-dermatodea_contig900:146..902-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig900.17090.1 ID=mRNA_S-dermatodea_contig900.17090.1|Name=mRNA_S-dermatodea_contig900.17090.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=757bp|location=Sequence derived from alignment at S-dermatodea_contig900:146..902- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCTCTGACCCACAGGCGGCACCTCGGGCGCACCGCGCGCTATCGACGGA
CCAGGCAGCAGAGTTGGACTCCCAGCTTGCATCCCTTCAGGAAGTTAGCA
CCGCCGCGGATCTAGCCGGTCGAGGCCTTCGGTCCGAGGCTGCTCCCCTC
TTGGAGCGCGCAGTCGAGATATGCACGGCATCTATGGGAGAGGACAGCGC
GCTCGCACGAGCAGCGCTGCACAGGCAAGCCGCTGTTCTGCGTGTGGGAC
GTTTCAAACGTTTGCTGGAAAGGGTCGCTAGATGGTGGTGTTTCAGCTCT
CTCTCCACCCGCAGTGGCGTAATAGCGTTGCCAGACGAGCCACGTTTTAC
GACGCATTCGAGGTTTCAAAAGGTTTCTCCTCAAAATTGTCTCTGGAGGC
CAATGTTTCAGCTCCACCGCGGCACCAAACGGCAGCAATGCTTCCACGTG
AGAAGCCCCGTGAACAGCTGCGAGCTCGGCACCATCCAGCTCGCACCGAA
AGCGGGGAATTTTGTTGCTTCATATGGGCGCGCATGCCTCTCACAGGGAT
TGTGCGGGCTATTGCGGTGGGCATTTCGCTCACAGTGCGTCCTTCCATCG
CGTCGTAAATTGCAGGCTGGCGCTGGTGCTGTACGATGACCAGAGGTTCG
ACGAAGTAGAGGCCGCGCTCACGCGTGGGAGGTCTGGCGCCGGGAAGAGA
TTTCCGGTCGGTGCGGCGGAGCTCCTACTGCTTTCCAAAGCTCAGGTGAG
GGAGGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig900:146..902-

>mRNA_S-dermatodea_contig900.17090.1 ID=mRNA_S-dermatodea_contig900.17090.1|Name=mRNA_S-dermatodea_contig900.17090.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at S-dermatodea_contig900:146..902- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCTCTGACCCACAGGCGGCACCTCGGGCGCACCGCGCGCTATCGACGGA
CCAGGCAGCAGAGTTGGACTCCCAGCTTGCATCCCTTCAGGAAGTTAGCA
CCGCCGCGGATCTAGCCGGTCGAGGCCTTCGGTCCGAGGCTGCTCCCCTC
TTGGAGCGCGCAGTCGAGATATGCACGGCATCTATGGGAGAGGACAGCGC
GCTCGCACGAGCAGCGCTGCACAGGCAAGCCGCTGTTCTGCGTCTCTCTG
ACCCACAGGCGGCACCTCGGGCGCACCGCGCGCTATCGACGGACCAGGCA
GCAGAGTTGGACTCCCAGCTTGCATCCCTTCAGGAAGTTAGCACCGCCGC
GGATCTAGCCGGTCGAGGCCTTCGGTCCGAGGCTGCTCCCCTCTTGGAGC
GCGCAGTCGAGATATGCACGGCATCTATGGGAGAGGACAGCGCGCTCGCA
CGAGCAGCGCTGCACAGGCAAGCCGCTGTTCTGCGTAGGTTCGACGAAGT
AGAGGCCGCGCTCACGCGTGGGAGGTCTGGCGCCGGGAAGAGATTTCCGG
TCGGTGCGGCGGAGCTCCTACTGCTTTCCAAAGCTCAGGTGAGGGAGGGA
AGGTTCGACGAAGTAGAGGCCGCGCTCACGCGTGGGAGGTCTGGCGCCGG
GAAGAGATTTCCGGTCGGTGCGGCGGAGCTCCTACTGCTTTCCAAAGCTC
AGGTGAGGGAGGGA
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