mRNA_S-dermatodea_contig89925.17080.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig89925.17080.1
Unique NamemRNA_S-dermatodea_contig89925.17080.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig89925.17080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig89925contigS-dermatodea_contig89925:150..616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size468
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925377.8428943-CDS-S-dermatodea_contig89925:149..6141622925377.8428943-CDS-S-dermatodea_contig89925:149..614Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89925 150..614 +
1694079892.4138646-CDS-S-dermatodea_contig89925:149..6141694079892.4138646-CDS-S-dermatodea_contig89925:149..614Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89925 150..614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig89925.17080.1prot_S-dermatodea_contig89925.17080.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig89925 150..614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig89925.17080.1

>prot_S-dermatodea_contig89925.17080.1 ID=prot_S-dermatodea_contig89925.17080.1|Name=mRNA_S-dermatodea_contig89925.17080.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=155bp
PAPTADPSSWADAARESPDSEWVVPRGGVDDLFWDADIFEVARHVKGGFP
EAHGLKVRQAARLLCRLVTEAEGGARRHSLSIPHSIDLSGGKLGSDALND
AVNSLLAALRSAHSHEHKGGVHWRHVSRSGCGKKCHICVEQHPSGGNSSH
GSDGG
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mRNA from alignment at S-dermatodea_contig89925:150..616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig89925.17080.1 ID=mRNA_S-dermatodea_contig89925.17080.1|Name=mRNA_S-dermatodea_contig89925.17080.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=467bp|location=Sequence derived from alignment at S-dermatodea_contig89925:150..616+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTGCCCCAACTGCGGATCCTTCCTCGTGGGCCGATGCCGCTCGGGAATC
TCCGGACTCCGAGTGGGTGGTACCTCGTGGAGGCGTCGATGATCTTTTTT
GGGACGCGGATATTTTCGAGGTGGCTCGACACGTCAAGGGCGGCTTCCCA
GAAGCTCACGGACTCAAGGTGCGGCAAGCCGCGCGCCTACTGTGCAGGTT
GGTGACAGAAGCCGAAGGCGGCGCGCGCCGCCACTCTCTCTCCATCCCCC
ACAGTATCGACCTCTCCGGTGGCAAGCTCGGCTCGGACGCACTCAACGAT
GCTGTCAACTCTCTTCTCGCGGCTTTGCGTTCGGCTCATTCTCATGAGCA
CAAAGGTGGTGTACATTGGCGGCACGTCTCGCGCTCGGGCTGTGGCAAGA
AGTGCCATATCTGCGTGGAGCAGCATCCGTCAGGCGGCAATTCCTCGCAT
GGCTCGGATGGTGGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig89925:150..616+

>mRNA_S-dermatodea_contig89925.17080.1 ID=mRNA_S-dermatodea_contig89925.17080.1|Name=mRNA_S-dermatodea_contig89925.17080.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at S-dermatodea_contig89925:150..616+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTGCCCCAACTGCGGATCCTTCCTCGTGGGCCGATGCCGCTCGGGAATC
TCCGGACTCCGAGTGGGTGGTACCTCGTGGAGGCGTCGATGATCTTTTTT
GGGACGCGGATATTTTCGAGGTGGCTCGACACGTCAAGGGCGGCTTCCCA
GAAGCTCACGGACTCAAGGTGCGGCAAGCCGCGCGCCTACTGTGCAGGTT
GGTGACAGAAGCCGAAGGCGGCGCGCGCCGCCACTCTCTCTCCATCCCCC
ACAGTATCGACCTCTCCGGTGGCAAGCTCGGCTCGGACGCACTCAACGAT
GCTGTCAACTCTCTTCTCGCGGCTTTGCGTTCGGCTCATTCTCATGAGCA
CAAAGGTGGTGTACATTGGCGGCACGTCTCGCGCTCGGGCTGTGGCAAGA
AGTGCCATATCTGCGTGGAGCAGCATCCGTCAGGCGGCAATTCCTCGCAT
GGCTCGGATGGTGGCCCTGCCCCAACTGCGGATCCTTCCTCGTGGGCCGA
TGCCGCTCGGGAATCTCCGGACTCCGAGTGGGTGGTACCTCGTGGAGGCG
TCGATGATCTTTTTTGGGACGCGGATATTTTCGAGGTGGCTCGACACGTC
AAGGGCGGCTTCCCAGAAGCTCACGGACTCAAGGTGCGGCAAGCCGCGCG
CCTACTGTGCAGGTTGGTGACAGAAGCCGAAGGCGGCGCGCGCCGCCACT
CTCTCTCCATCCCCCACAGTATCGACCTCTCCGGTGGCAAGCTCGGCTCG
GACGCACTCAACGATGCTGTCAACTCTCTTCTCGCGGCTTTGCGTTCGGC
TCATTCTCATGAGCACAAAGGTGGTGTACATTGGCGGCACGTCTCGCGCT
CGGGCTGTGGCAAGAAGTGCCATATCTGCGTGGAGCAGCATCCGTCAGGC
GGCAATTCCTCGCATGGCTCGGATGGTGGC
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