mRNA_S-dermatodea_contig89905.17075.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig89905.17075.1
Unique NamemRNA_S-dermatodea_contig89905.17075.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig89905.17075.1 vs. uniprot
Match: D8LGX1_ECTSI (Acyl-coenzyme A dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGX1_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.310e-36
Identity = 69/72 (95.83%), Postives = 72/72 (100.00%), Query Frame = 1
Query:    1 SFMNGTVEGEEVFIPLDQIIGGRERAGFGWNMLMDCLAEGRGISLPAMSVSASKMTSSIVGAYARIRKQFKV 216
            SFMNGTVEGEEVFIPLDQIIGGRERAGFGWNMLMDCLAEGRGISLPAMSV+ASKMT+S+VGAYARIRKQFKV
Sbjct:  303 SFMNGTVEGEEVFIPLDQIIGGRERAGFGWNMLMDCLAEGRGISLPAMSVAASKMTASVVGAYARIRKQFKV 374          
BLAST of mRNA_S-dermatodea_contig89905.17075.1 vs. uniprot
Match: A0A835YIS3_9STRA (Acyl-coenzyme A dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIS3_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.890e-32
Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = 1
Query:    1 SFMNGTVEGEEVFIPLDQIIGGRERAGFGWNMLMDCLAEGRGISLPAMSVSASKMTSSIVGAYARIRKQFKV 216
            +FMNGTVEGE VFIPLDQIIGG+ RAGFGWNMLMDCLAEGRG+SLPAMSV+ASKM +  VGAYARIRKQFKV
Sbjct:  291 AFMNGTVEGENVFIPLDQIIGGQARAGFGWNMLMDCLAEGRGVSLPAMSVAASKMVAGTVGAYARIRKQFKV 362          
BLAST of mRNA_S-dermatodea_contig89905.17075.1 vs. uniprot
Match: A0A7S1TSL9_9STRA (Acyl-coenzyme A dehydrogenase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSL9_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.440e-28
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 1
Query:    1 SFMNGTVEGEEVFIPLDQIIGGRERAGFGWNMLMDCLAEGRGISLPAMSVSASKMTSSIVGAYARIRKQFKV 216
            SFMNGTVEGE+VFIP+D I+GG+ERAGFGWNMLMDCLAEGR ISLPA +V+A++   + VGAYARIRKQFKV
Sbjct:  287 SFMNGTVEGEDVFIPMDCIVGGQERAGFGWNMLMDCLAEGRSISLPASAVAAARFGVTAVGAYARIRKQFKV 358          
BLAST of mRNA_S-dermatodea_contig89905.17075.1 vs. uniprot
Match: A0A7S1TSJ0_9STRA (Acyl-coenzyme A dehydrogenase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSJ0_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.440e-28
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 1
Query:    1 SFMNGTVEGEEVFIPLDQIIGGRERAGFGWNMLMDCLAEGRGISLPAMSVSASKMTSSIVGAYARIRKQFKV 216
            SFMNGTVEGE+VFIP+D I+GG+ERAGFGWNMLMDCLAEGR ISLPA +V+A++   + VGAYARIRKQFKV
Sbjct:  287 SFMNGTVEGEDVFIPMDCIVGGQERAGFGWNMLMDCLAEGRSISLPASAVAAARFGVTAVGAYARIRKQFKV 358          
BLAST of mRNA_S-dermatodea_contig89905.17075.1 vs. uniprot
Match: A0A7S3HK47_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HK47_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.330e-27
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    1 SFMNGTVEGEEVFIPLDQIIGGRERAGFGWNMLMDCLAEGRGISLPAMSVSASKMTSSIVGAYARIRKQFKV 216
            SFMNGTV G++VFIP+  IIGG+ R GFGWNMLMDCLAEGR ISLPA +V A+K + + VGAYAR+RKQF+V
Sbjct:   71 SFMNGTVTGKDVFIPMKSIIGGQTRCGFGWNMLMDCLAEGRSISLPASAVGAAKASLNAVGAYARVRKQFRV 142          
BLAST of mRNA_S-dermatodea_contig89905.17075.1 vs. uniprot
Match: W7TNX9_9STRA (Acyl-coenzyme A dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNX9_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.040e-27
Identity = 52/71 (73.24%), Postives = 64/71 (90.14%), Query Frame = 1
Query:    4 FMNGTVEGEEVFIPLDQIIGGRERAGFGWNMLMDCLAEGRGISLPAMSVSASKMTSSIVGAYARIRKQFKV 216
            FMNGTVEGE VFIP+D+++GG+ERAG+GWNMLMDCLAEGR ISLPA +++  K++ + VGAYARIRKQFKV
Sbjct:  296 FMNGTVEGENVFIPIDKLLGGQERAGYGWNMLMDCLAEGRAISLPAGAIAIGKLSVTAVGAYARIRKQFKV 366          
BLAST of mRNA_S-dermatodea_contig89905.17075.1 vs. uniprot
Match: F0YPJ8_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPJ8_AURAN)

HSP 1 Score: 103 bits (258), Expect = 9.510e-27
Identity = 46/72 (63.89%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    1 SFMNGTVEGEEVFIPLDQIIGGRERAGFGWNMLMDCLAEGRGISLPAMSVSASKMTSSIVGAYARIRKQFKV 216
            +FMNGTV+GE+V++P+D ++GG+ER GFGW+M ++CLAEGRG+SLPAM+V+  K    IVGAY+R RKQFKV
Sbjct:   41 AFMNGTVKGEDVWVPMDAVLGGQERCGFGWHMFVECLAEGRGVSLPAMAVALGKGVGPIVGAYSRARKQFKV 112          
BLAST of mRNA_S-dermatodea_contig89905.17075.1 vs. uniprot
Match: A0A0L0FQQ7_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FQQ7_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 5.370e-26
Identity = 50/72 (69.44%), Postives = 65/72 (90.28%), Query Frame = 1
Query:    1 SFMNGTVEGEEVFIPLDQIIGGRERAGFGWNMLMDCLAEGRGISLPAMSVSASKMTSSIVGAYARIRKQFKV 216
            +FMNGTV+G++VFIP+D +IGG+++AGFGWNMLM+CL+EGRGISLPA +VSA ++    VGAYAR+RKQFKV
Sbjct:  283 AFMNGTVKGKDVFIPIDYLIGGQKQAGFGWNMLMECLSEGRGISLPASAVSAGQIACVGVGAYARVRKQFKV 354          
BLAST of mRNA_S-dermatodea_contig89905.17075.1 vs. uniprot
Match: A0A7S2P7S4_9STRA (Acyl-coenzyme A dehydrogenase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P7S4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 6.250e-26
Identity = 48/72 (66.67%), Postives = 64/72 (88.89%), Query Frame = 1
Query:    1 SFMNGTVEGEEVFIPLDQIIGGRERAGFGWNMLMDCLAEGRGISLPAMSVSASKMTSSIVGAYARIRKQFKV 216
            +FMNGTVEGE+V+IP+D I+GG+ER GFGWNM ++CLAEGRG+SLPA S+ A++  ++ VGAYAR+RKQF+V
Sbjct:  315 AFMNGTVEGEDVWIPMDSILGGQERCGFGWNMFVECLAEGRGVSLPAGSIGAARTVTAAVGAYARVRKQFRV 386          
BLAST of mRNA_S-dermatodea_contig89905.17075.1 vs. uniprot
Match: K3WID3_GLOUD (Acyl-coenzyme A dehydrogenase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WID3_GLOUD)

HSP 1 Score: 107 bits (268), Expect = 1.240e-25
Identity = 49/71 (69.01%), Postives = 64/71 (90.14%), Query Frame = 1
Query:    4 FMNGTVEGEEVFIPLDQIIGGRERAGFGWNMLMDCLAEGRGISLPAMSVSASKMTSSIVGAYARIRKQFKV 216
            FMNG V+G++VFIP+D+IIGG+ R G+GWNMLMDCLAEGR ISLPA +V+++K++ + VGAYAR+RKQFKV
Sbjct:  307 FMNGPVQGQDVFIPMDKIIGGQTRVGYGWNMLMDCLAEGRSISLPASAVASAKLSVNAVGAYARVRKQFKV 377          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig89905.17075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGX1_ECTSI1.310e-3695.83Acyl-coenzyme A dehydrogenase n=2 Tax=Ectocarpus T... [more]
A0A835YIS3_9STRA2.890e-3286.11Acyl-coenzyme A dehydrogenase n=1 Tax=Tribonema mi... [more]
A0A7S1TSL9_9STRA2.440e-2877.78Acyl-coenzyme A dehydrogenase n=2 Tax=Phaeomonas p... [more]
A0A7S1TSJ0_9STRA2.440e-2877.78Acyl-coenzyme A dehydrogenase n=2 Tax=Phaeomonas p... [more]
A0A7S3HK47_9STRA3.330e-2770.83Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
W7TNX9_9STRA4.040e-2773.24Acyl-coenzyme A dehydrogenase n=2 Tax=Monodopsidac... [more]
F0YPJ8_AURAN9.510e-2763.89Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A0L0FQQ7_9EUKA5.370e-2669.44Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A7S2P7S4_9STRA6.250e-2666.67Acyl-coenzyme A dehydrogenase (Fragment) n=1 Tax=L... [more]
K3WID3_GLOUD1.240e-2569.01Acyl-coenzyme A dehydrogenase n=1 Tax=Globisporang... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig89905contigS-dermatodea_contig89905:108..323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.4e-30
Seed eggNOG ortholog2880.D8LGX1
EggNOG free text desc.long-chain-acyl-CoA dehydrogenase activity
EggNOG OGsCOG1960@1,KOG0137@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size210
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925377.634819-UTR-S-dermatodea_contig89905:107..1131622925377.634819-UTR-S-dermatodea_contig89905:107..113Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig89905 108..113 +
1694079892.3072855-UTR-S-dermatodea_contig89905:107..1131694079892.3072855-UTR-S-dermatodea_contig89905:107..113Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig89905 108..113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925377.6445723-CDS-S-dermatodea_contig89905:113..3231622925377.6445723-CDS-S-dermatodea_contig89905:113..323Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89905 114..323 +
1694079892.320682-CDS-S-dermatodea_contig89905:113..3231694079892.320682-CDS-S-dermatodea_contig89905:113..323Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89905 114..323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig89905.17075.1prot_S-dermatodea_contig89905.17075.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig89905 114..323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig89905.17075.1

>prot_S-dermatodea_contig89905.17075.1 ID=prot_S-dermatodea_contig89905.17075.1|Name=mRNA_S-dermatodea_contig89905.17075.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=70bp
MNGTVEGEEVFIPLDQIIGGRERAGFGWNMLMDCLAEGRGISLPAMSVSA
SKMTSSIVGAYARIRKQFKV
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mRNA from alignment at S-dermatodea_contig89905:108..323+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig89905.17075.1 ID=mRNA_S-dermatodea_contig89905.17075.1|Name=mRNA_S-dermatodea_contig89905.17075.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at S-dermatodea_contig89905:108..323+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCTTCATGAACGGCACCGTCGAGGGAGAAGAGGTGTTCATCCCCCTTGA TCAGATCATCGGAGGGCGCGAGAGGGCCGGGTTCGGTTGGAACATGCTCA TGGACTGTCTCGCCGAGGGCCGCGGCATCTCCCTTCCGGCCATGTCGGTG TCGGCCTCCAAGATGACATCCTCTATCGTCGGCGCCTACGCGCGCATCCG CAAGCAGTTCAAGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig89905:108..323+

>mRNA_S-dermatodea_contig89905.17075.1 ID=mRNA_S-dermatodea_contig89905.17075.1|Name=mRNA_S-dermatodea_contig89905.17075.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at S-dermatodea_contig89905:108..323+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAACGGCACCGTCGAGGGAGAAGAGGTGTTCATCCCCCTTGATCAGAT
CATCGGAGGGCGCGAGAGGGCCGGGTTCGGTTGGAACATGCTCATGGACT
GTCTCGCCGAGGGCCGCGGCATCTCCCTTCCGGCCATGTCGGTGTCGGCC
TCCAAGATGACATCCTCTATCGTCGGCGCCTACGCGCGCATCCGCAAGCA
GTTCAAGGTGATGAACGGCACCGTCGAGGGAGAAGAGGTGTTCATCCCCC
TTGATCAGATCATCGGAGGGCGCGAGAGGGCCGGGTTCGGTTGGAACATG
CTCATGGACTGTCTCGCCGAGGGCCGCGGCATCTCCCTTCCGGCCATGTC
GGTGTCGGCCTCCAAGATGACATCCTCTATCGTCGGCGCCTACGCGCGCA
TCCGCAAGCAGTTCAAGGTG
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