mRNA_S-dermatodea_contig8971.17055.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8971.17055.1
Unique NamemRNA_S-dermatodea_contig8971.17055.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8971.17055.1 vs. uniprot
Match: D7G8R8_ECTSI (CNH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R8_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 6.320e-30
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    1 DMSVLGSVNVSSIHERYAYDLFSWGDYEGAVGHFLVAETPVEHVLSLFPSLAPPEFVPP 177
            DMSVLGSVNV SIHERYAYDLFSWGDYEGAVGHFLVAETPV+HVLSLFPSLAPPEFVPP
Sbjct:  370 DMSVLGSVNVLSIHERYAYDLFSWGDYEGAVGHFLVAETPVDHVLSLFPSLAPPEFVPP 428
[Close]
BLAST of mRNA_S-dermatodea_contig8971.17055.1 vs. uniprot
Match: A0A835YS55_9STRA (CNH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS55_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.370e-17
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 DMSVLGSVNVSSIHERYAYDLFSWGDYEGAVGHFLVAETPVEHVLSLFPSLAPPE 165
            D ++LG V + ++HERYAYDLFSWGDYEGAV HFL A  P+ HV+ LFPSL PP+
Sbjct:  379 DAALLGGVAIPTVHERYAYDLFSWGDYEGAVSHFLQAGAPLPHVVGLFPSLLPPD 433
[Close]
BLAST of mRNA_S-dermatodea_contig8971.17055.1 vs. uniprot
Match: F0YJL4_AURAN (CNH domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJL4_AURAN)

HSP 1 Score: 52.8 bits (125), Expect = 1.700e-6
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:   37 IHERYAYDLFSWGDYEGAVGHFLVAETPVEHVLSLFPSLAPPE 165
            I ERYAY L+S GD+EGA  H+L AE   E V  LFPS+ PPE
Sbjct:  434 IEERYAYALYSRGDFEGASQHWLNAEAAPEAVAELFPSICPPE 476
[Close]
BLAST of mRNA_S-dermatodea_contig8971.17055.1 vs. uniprot
Match: F0YIN5_AURAN (CNH domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIN5_AURAN)

HSP 1 Score: 52.8 bits (125), Expect = 1.700e-6
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   37 IHERYAYDLFSWGDYEGAVGHFLVAETPVEHVLSLFPSLAPPE 165
            + ERYAY L+S GD+EGA  H+L AET  + V  LFPS+ PPE
Sbjct:  606 VEERYAYALYSRGDFEGASQHWLNAETAPQAVADLFPSIRPPE 648
[Close]
BLAST of mRNA_S-dermatodea_contig8971.17055.1 vs. uniprot
Match: A0A6J1J1I5_CUCMA (vam6/Vps39-like protein n=9 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1J1I5_CUCMA)

HSP 1 Score: 50.8 bits (120), Expect = 8.130e-6
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    7 SVLGSVNVSSIHERYAYDLFSWGDYEGAVGHFLVAETPVEHVLSLFPSLAPPE 165
            S L S   SSIH RYA++LF  G YE A+ HFL ++  + +VL  +PS+A P+
Sbjct:  335 SSLRSAKESSIHIRYAHNLFDNGSYEEAMEHFLASQVDITYVLPFYPSIALPK 387
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8971.17055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8R8_ECTSI6.320e-3096.61CNH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YS55_9STRA2.370e-1765.45CNH domain-containing protein n=1 Tax=Tribonema mi... [more]
F0YJL4_AURAN1.700e-660.47CNH domain-containing protein n=1 Tax=Aureococcus ... [more]
F0YIN5_AURAN1.700e-658.14CNH domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A6J1J1I5_CUCMA8.130e-647.17vam6/Vps39-like protein n=9 Tax=Cucurbitaceae TaxI... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8971contigS-dermatodea_contig8971:8614..8790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue2.1e-24
Seed eggNOG ortholog2880.D7G8R8
Preferred nameVPS39
KEGG koko:K17267,ko:K20183
KEGG Pathwayko04138,map04138
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005911,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006903,GO:0006906,GO:0006914,GO:0006950,GO:0006996,GO:0007033,GO:0007034,GO:0007041,GO:0007154,GO:0008104,GO:0008150,GO:0008152,GO:0008333,GO:0008593,GO:0009056,GO:0009267,GO:0009506,GO:0009605,GO:0009705,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010008,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016237,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0022406,GO:0022411,GO:0023051,GO:0023056,GO:0030054,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0030897,GO:0031090,GO:0031267,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0032006,GO:0032008,GO:0032879,GO:0032889,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033554,GO:0034058,GO:0034613,GO:0034727,GO:0035542,GO:0042144,GO:0042594,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043933,GO:0044087,GO:0044088,GO:0044232,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0045184,GO:0046907,GO:0048193,GO:0048278,GO:0048284,GO:0048475,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0055044,GO:0060627,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0071496,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097352,GO:0097576,GO:0097708,GO:0098588,GO:0098772,GO:0098796,GO:0098805,GO:0098852,GO:0098876,GO:0099022,GO:0099023,GO:0140056,GO:1902500,GO:1902531,GO:1902533,GO:1902774,GO:1903432,GO:1904263,GO:1990126,GO:1990816
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5240@1,KOG1078@2759,KOG2063@1,KOG2063@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionCoatomer, gamma subunit, appendage, Ig-like subdomain
Ec32 orthologEc-22_002730.1
Exons1
Model size177
Cds size174
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925375.8917248-UTR-S-dermatodea_contig8971:8613..86161622925375.8917248-UTR-S-dermatodea_contig8971:8613..8616Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8971 8614..8616 +
1694079891.1321166-UTR-S-dermatodea_contig8971:8613..86161694079891.1321166-UTR-S-dermatodea_contig8971:8613..8616Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8971 8614..8616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925375.9027967-CDS-S-dermatodea_contig8971:8616..87901622925375.9027967-CDS-S-dermatodea_contig8971:8616..8790Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8971 8617..8790 +
1694079891.145059-CDS-S-dermatodea_contig8971:8616..87901694079891.145059-CDS-S-dermatodea_contig8971:8616..8790Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8971 8617..8790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8971.17055.1prot_S-dermatodea_contig8971.17055.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8971 8617..8790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8971.17055.1

>prot_S-dermatodea_contig8971.17055.1 ID=prot_S-dermatodea_contig8971.17055.1|Name=mRNA_S-dermatodea_contig8971.17055.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=58bp
MSVLGSVNVSSIHERYAYDLFSWGDYEGAVGHFLVAETPVEHVLSLFPSL
APPEFVPP
back to top

mRNA from alignment at S-dermatodea_contig8971:8614..8790+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8971.17055.1 ID=mRNA_S-dermatodea_contig8971.17055.1|Name=mRNA_S-dermatodea_contig8971.17055.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at S-dermatodea_contig8971:8614..8790+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACATGTCGGTGCTGGGGTCCGTGAACGTGTCCAGCATCCACGAGCGCTA
TGCGTACGACCTATTCTCTTGGGGGGACTACGAGGGGGCGGTGGGACACT
TTCTCGTCGCGGAGACACCGGTGGAGCACGTGCTCTCCCTGTTTCCCTCC
CTAGCGCCGCCGGAGTTCGTGCCTCCC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8971:8614..8790+

>mRNA_S-dermatodea_contig8971.17055.1 ID=mRNA_S-dermatodea_contig8971.17055.1|Name=mRNA_S-dermatodea_contig8971.17055.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at S-dermatodea_contig8971:8614..8790+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGGTGCTGGGGTCCGTGAACGTGTCCAGCATCCACGAGCGCTATGC
GTACGACCTATTCTCTTGGGGGGACTACGAGGGGGCGGTGGGACACTTTC
TCGTCGCGGAGACACCGGTGGAGCACGTGCTCTCCCTGTTTCCCTCCCTA
GCGCCGCCGGAGTTCGTGCCTCCCATGTCGGTGCTGGGGTCCGTGAACGT
GTCCAGCATCCACGAGCGCTATGCGTACGACCTATTCTCTTGGGGGGACT
ACGAGGGGGCGGTGGGACACTTTCTCGTCGCGGAGACACCGGTGGAGCAC
GTGCTCTCCCTGTTTCCCTCCCTAGCGCCGCCGGAGTTCGTGCCTCCC
back to top