mRNA_S-dermatodea_contig8908.17004.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8908.17004.1
Unique NamemRNA_S-dermatodea_contig8908.17004.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8908.17004.1 vs. uniprot
Match: A0A6H5K5B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B9_9PHAE)

HSP 1 Score: 474 bits (1220), Expect = 6.040e-158
Identity = 272/586 (46.42%), Postives = 355/586 (60.58%), Query Frame = 1
Query:   16 VAIDLGTSRSAWAISIQGRAEGDIILKIPEGSLPSVSG-MKTETAVLLDSESGE-FRAFGRAARETFIEEREDDEWVLDDGDEVAEQALKVSSTMLFRWFKVALCEKRGYQSIDDPVIAAEGGQKKPLMHVIATALRHFKEDILKYVMSTGGVPQKAGDLTWVLTIPAIYDDFAKRFMRHAALEAGIISSINSAS-LQLCLEPEAACLAMSIKEAPLVFRPGANVMIIDCGGGTVDITTHEVISTGPLRLKELLPPTGGPWGSTCIDEAFKKWLENFMGKDKFVRMRHLASFYTLMLQWEDGKTRFGGGKEDSVRINLGEVSRSLEINASEMKGLRAAFNGAQACADLCVTGGKFLVILPSPVVLSFFSWTIERIGTCLGDLKHSDALRHLSHVFLVGGFSSSPLVQAIAREKLHGDGCAVVSALRPDVAIVKGAVLFANAATVFTTRKARLTYGVKSGIEYDRDNPGHVKNYSQHRQAVGNNGKERISIFSRHIAAGDDIPQDGACDGKTYGPVLDCQTSIIIGILASDKKDIDFPDEGDCFKVGEVYVPMDMDIPLGLRGVKVQFTFGGTELFVTAISTSTGEK 1764
            VA+DLGTSR+A  ISI GR+E ++ +  P GS    S  +KTETA LL+++      AFG+ ARE FI++ + DE   D G     +    +  MLFR+FK  LC+  GY S+D PV  AEGG+  PLM V+   LRH KED+L ++     V     D+ WV+TIPAIYDDFAKRFMR +A  AGIIS+++ AS LQLCLEPEAACLA+SIKEAPL+ + G  +MI+DCGGGTVDITTH V S  PL+LKEL  PTGG WGS C+D  F  WL    G   F R+R   +FY+LM  WE+ KT F G +++ V +N+ +V   L  +  ++  L AA N         +T     + LPS +V +FF+ TI++IG CL  L+    LR L +VFLVGGFS  PLVQ  AR +L   GC V+   R ++AIV+GA +FA+    F+ R A+LTYGVKS   YD  N  HVK  S       + GKE I  FS HI  G  +P DG C  + YGP+   QT++   ILA    DI+FPD    F +GEV V +DM      RG+  +F F  +E  +     +TGE+
Sbjct:    8 VAVDLGTSRTAIGISIPGRSENEVTVCTPNGSGHCRSAQLKTETAALLEAKHPHGLLAFGKTARERFIKDAQRDE---DGGGCTGRRTTSGAPNMLFRFFKTELCKNSGYTSVDQPVATAEGGETLPLMTVMTAVLRHIKEDVLAHLSQRLEVDPTVADVNWVVTIPAIYDDFAKRFMRVSAHRAGIISAVDDASQLQLCLEPEAACLAVSIKEAPLLAKAGIKLMIVDCGGGTVDITTHSVESRRPLKLKELATPTGGEWGSVCVDSMFMVWLRKLFGATAFARVRTTWAFYSLMDYWEEAKTAFQGKEDEDVSLNMVDVVMELGFDKGKLAELVAAHNHDLEPTHH-LTRMNHYIDLPSGLVRTFFAPTIDKIGNCLRSLRGKPLLRDLKYVFLVGGFSCCPLVQQAARAELDRGGCRVIDVDRRELAIVRGATIFASNQLAFS-RIAKLTYGVKSTCIYDSSNAEHVKRRSS-PPIWDSAGKEVIDAFSTHIKRGAYVPSDGTCTRRCYGPLRPNQTTVSFQILACHHTDIEFPDTDSTFPLGEVTVNLDMRASFEDRGIAAEFVFCESEFLLRCFRGTTGER 587          
BLAST of mRNA_S-dermatodea_contig8908.17004.1 vs. uniprot
Match: D7G6V4_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V4_ECTSI)

HSP 1 Score: 417 bits (1073), Expect = 5.190e-136
Identity = 248/588 (42.18%), Postives = 346/588 (58.84%), Query Frame = 1
Query:   13 VVAIDLGTSRSAWAISIQGRAEGDIILKIPEGSLPSVSG-MKTETAVLLDSE-SGEFRAFGRAARETFIEEREDDEWVLDDGDEVAEQALKVSSTMLFRWFKVALCEKRGYQS-IDDPVIAAEGGQKK-PLMHVIATALRHFKEDILKYVMSTGGVPQKAGDLTWVLTIPAIYDDFAKRFMRHAALEAGIISSINSASLQLCLEPEAACLAMSIKEAPLVFRP-GANVMIIDCGGGTVDITTHEVISTGPLRLKELLPPTGGPWGSTCIDEAFKKWLENFMGKDKFVRMRHLASFYTLMLQWEDGKTRFGGGKEDSV-RINLGEVSRSLEINASEMKGLRAAFNGAQACADLCVTGGKFLVILPSPVVLSFFSWTIERIGTCLGDLKHSDALRHLSHVFLVGGFSSSPLVQAIAREKLHGDGCAVVSALRPDVAIVKGAVLFANAATVFTTRKARLTYGVKSGIEYDRDNPGHVKNYSQHRQAVG----NNGKERISI-FSRHIAAGDDIPQDGACDGKTYGPVLDCQTSIIIGILASDKKDIDFPDEGDCFKVGEVYVPMDMDIPLGLRGVKVQFTFGGTELFVTAI 1743
            VVAID GT+RSAWA  + G+A+  I++KIP  +  S S  +KTETA L+    SG   +FG AA E +              D VA+QAL       FRWFK  LCE R  Q+ +   +  + GGQ   PL+ V+  +LR+FKED+L ++  TGG       + WVLT+PAIYDDFAKRFMR AA EAG+I  +NS  L+LCLEPEAACLA    + PL     G N+M+IDCGGGTVDIT H++IS  PL L+E+  P GG +GST +D AF+ WL+ F+G +KF  +    +  ++M+ WE  K  F G    +V R+NL E++   ++   +M+ LR ++N  +  + L V G KF V LP+ +V SFF+ T+++I  CL  +K    L  L  VF+VGGFS  P+++ + R  L      VV    PD+AIVKGAV++ + +T F +RKAR TYG    + +D  N  H +     R+A G    ++GK  +S  FS +I  GDDIP+ G    + YGP+   QTS+   +  + +++  F DE  CF+VG V  P+DM      RG+  + TFGG EL V  +
Sbjct:    7 VVAIDFGTTRSAWAYQVSGQADNKILVKIPASADTSPSSTIKTETAALIGGRGSGGLVSFGPAAIEDYAA-----------SDHVADQAL-------FRWFKFDLCESRTDQTEVGSVMTESVGGQHTVPLLGVMTASLRYFKEDVLAFLSRTGGRTVDVNSVNWVLTVPAIYDDFAKRFMRQAAYEAGMIDRMNSTRLRLCLEPEAACLAAITTDNPLTSNAEGKNMMVIDCGGGTVDITAHKIISVEPLTLEEVAAPDGGLFGSTRVDNAFRVWLKGFLG-EKFQEIETTRTLLSIMMSWERKKATFQGLDSAAVWRLNLSELA-GYDVTNQDMENLRRSYNDGKP-SSLFVGGEKFNVTLPTTLVTSFFTPTLQKIAECLRRIKRESQLHDLHRVFVVGGFSRCPMLREVIRNGLDLPAGRVVDVHEPDLAIVKGAVMYFDRSTSFNSRKARYTYGTGFAVPFDDSNAEHRR-----RRAAGLVSHHDGKVHVSNGFSIYIRKGDDIPEGGILKRRRYGPLKKSQTSMSFAVYCTSERNPSFADENGCFEVGRVSFPLDMTKEFQKRGIVGEMTFGGPELTVKIV 568          
BLAST of mRNA_S-dermatodea_contig8908.17004.1 vs. uniprot
Match: A0A6H5JSM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSM6_9PHAE)

HSP 1 Score: 391 bits (1005), Expect = 9.030e-126
Identity = 238/593 (40.13%), Postives = 338/593 (57.00%), Query Frame = 1
Query:   13 VVAIDLGTSRSAWAISIQGRAEGDIILKIPEGSLPSVSGMKTETAVLLDSE-SGEFRAFGRAARETFIEEREDDEWVLDDGDEVAEQALKVSSTMLFRWFKVALCEKRGYQSIDDPVI--AAEGGQKKPLMHVIATALRHFKEDILKYVMSTGGVPQKAGDLTWVLTIPAIYDDFAKRFMRHAALEAGIISSINSASLQLCLEPEAACLAMSIKEAPLVF-RPGANVMIIDCGGGTVDITTHEVISTGPLRLKELLPPTGGPWGSTCIDEAFKKWLENFMGKDKFVRMRHLASFYTLMLQWEDGKTRFGGGKEDS-VRINLGEVSRSLEINASEMKGLRAAFNGAQACADLCVTGGKFLVILPSPVVLSFFSWTIERIGTCLGDLKHSDALRHLSHVFLVGGFSSSPLVQAIAREKLHGDGCAVVSALRPDVAIVKGAVLFANAATVFTTRKARLTYGVKSGIEYDRDNPGHVKNYSQHRQAVG----NNGKERI-SIFSRHIAAGDDIPQDGACDGKTYGPVLDCQTSIIIGILASDKKDIDFPDEGDCFKVGEVYVPMDMDIPLGLRGVKVQFTFGGTELFVTAISTSTGE 1761
            +VAID GT+RSAWA  + G+A+  I++KI   +  S S  KTET  L+    SG+  AFG AA          DE+   D  +  +QAL       FRWFK+ LCE R   +    V+  + E     PL+ V+  +LR+FKED+L  +  TGG       + WVLT+PAIYDDFAKRFMR AA EAG+I  ++S  L+LCLEPEAACLA  +K+ PL        +M+IDCGGG VDIT H++IS  PL L E+  P GG +GST +D AFK WL+ F+G DKF  ++   +  ++M  WE  K  F G    + +R+N  E++   ++   +M+ LR ++N  +    L V GGKF V LP+ +V SFF  T+++I  CL  +K   +L  L  VF+VGGFS  P+++ + R  L      VV    PD+AIVKGAV++ N +T+F +RKAR TYG    + ++     H +     R+A G    +NGK  + + FS +I  GDDIP  G    ++Y P+ + Q ++   +  S +++  F DE  CF+VG V   +DM      RG+  + TFGG EL V  + +   E
Sbjct:   12 IVAIDFGTTRSAWAYQVSGQADNTILVKILASADTSASSTKTETVALIGGRGSGDLIAFGPAAI---------DEYAASDNPD--DQAL-------FRWFKLDLCESRPDHTDFASVMTESVEARHTVPLLGVMTASLRYFKEDVLGCLSRTGGRTVDVNRVNWVLTVPAIYDDFAKRFMRQAAFEAGMIDRVHSTRLRLCLEPEAACLAAIVKDNPLTSDATDKKMMVIDCGGGIVDITAHKIISVEPLILDEVAAPDGGLFGSTRVDHAFKVWLKEFLG-DKFQGIQTTRTLVSIMSSWESKKATFQGTDSAAGLRLNFSELAE-YDVTIQDMENLRTSYNDGKP-PSLHVGGGKFNVTLPTTLVTSFFEPTLDKIAECLRRIKRESSLHDLYRVFVVGGFSRCPMLREVVRTGLDLPAGRVVLVHEPDLAIVKGAVMYFNRSTIFNSRKARYTYGTNCVVPFNDSIAEHRR-----RRAAGMCATHNGKTCLPNAFSVYIRKGDDIPVGGILKRRSYIPLKNSQQAMSFPVYGSSERNPSFADEKGCFEVGRVSFALDMTKQFEKRGIIGEVTFGGPELIVKILDSEERE 578          
BLAST of mRNA_S-dermatodea_contig8908.17004.1 vs. uniprot
Match: D7FKB7_ECTSI (Heat shock protein 70 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB7_ECTSI)

HSP 1 Score: 382 bits (980), Expect = 1.210e-120
Identity = 232/595 (38.99%), Postives = 344/595 (57.82%), Query Frame = 1
Query:    7 KIVVAIDLGTSRSAWAISI-----QGRAEGDIILKIPEGSLPSVSGM-KTETAVLLDSES-GEFRAFGRAARETFIEEREDDEWVLDDGDEVAEQALKVSSTMLFRWFKVALCE-KRGYQSIDDPVIAAEGGQKKPLMHVIATALRHFKEDILKYVMSTGGVPQKAGDLTWVLTIPAIYDDFAKRFMRHAALEAGIISSINSASLQLCLEPEAACLAMSIKEA--PLVFRP-GANVMIIDCGGGTVDITTHEVISTGPLRLKELLPPTGGPWGSTCIDEAFKKWLENFMGK--DKFVRMRHLASFYTLMLQWEDGKTRFGGGKE-DSVRINLGEVSRSLEINASEMKGLRAAFNGAQACADLCVTGGKFLVILPSPVVLSFFSWTIERIGTCLGDLKHSDALRHLSHVFLVGGFSSSPLVQAIAREKLHGDGCAVVSALRPDVAIVKGAVLFANAATVFTTRKARLTYGVKSGIEYDRDNPGHVKNYSQHRQAVGNNGKERISI---FSRHIAAGDDIPQDGACDGKTYGPV-LDCQTSIIIGILASDKKDIDFPDEGDCFKVGEVYVPMDMDIPLGL-RGVKVQFTFGGTELFV 1734
            +IVVA+D GT+RSAWA  +       + +  I ++IP G  P+ S   KTETA L++    GE  AFG+AA E   E           G + ++     +S  LF+W+K  L + K G  +++     +  G   PL+ V+   LR+FK+D + ++ S  G   +A D+ WVLT+PA+YDDFAK FMR AA EAG+I  + S +L+LCLEPEAACLA+  + A  PL     G  +MI+DCGGGTVDITTH +++  PL + E+  PTGG WGST +DEAFKKWL+ F+G   DK  +   L S   +M  WE  K  F G +  + VR+NL  + +   +++ +++ LR  +N  ++  +  V G  ++VILP+ +V SFF+ T++ I  CL  +K   ALR+L  VF+VGGFS  PL+  + R +L    C VV    PD+AIV+GAV + + + VF +R+ARLTYG      +D  N  H +      + +  + ++ + +   F  HI  G+++P +G    + Y PV L+ +T+ I  + AS  +D  F DE  CF +G++  P+DM       R  +V+FTFGG EL V
Sbjct:   95 RIVVAVDFGTTRSAWAYKVGDDEPDDKTDDKIFVRIPGGVGPAPSARTKTETAALINRRGRGELVAFGQAALERHAEN------TATAGGDPSD-----ASEALFKWYKTTLFKPKPGENTVERVTATSTSGDVVPLLGVMTATLRYFKKDAVGFLSSLTGRTIRARDVNWVLTVPAVYDDFAKHFMRQAAHEAGMIDKVGSTNLRLCLEPEAACLAVIPRGANNPLTCEAEGKKMMIVDCGGGTVDITTHNIVTIDPLNVVEVAAPTGGAWGSTQVDEAFKKWLQRFLGDWYDKIAKTEILLS---IMEFWERKKAAFDGHESAEPVRLNLSALGQRQMMDSHDLEDLRTRYNRGESRRNR-VEGKGYMVILPTTLVTSFFTPTLDSIARCLRGIKGGSALRNLHRVFVVGGFSRCPLLMQVVRAELQNASCRVVEVSEPDIAIVRGAVKYFDESAVFNSRRARLTYGASVLHAFDEKNAEHRRRRDA-GETLKYDDRDEVMVDGCFFPHIRIGENVPTNGVTSRENYTPVSLENETNCI-QVYASSARDPAFVDEDSCFMLGKISFPLDMTKKTRQERAYRVEFTFGGPELTV 672          
BLAST of mRNA_S-dermatodea_contig8908.17004.1 vs. uniprot
Match: D7FNB5_ECTSI (Heat shock protein 70-putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB5_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 5.700e-92
Identity = 213/606 (35.15%), Postives = 325/606 (53.63%), Query Frame = 1
Query:   10 IVVAIDLGTSRSAWAISIQGRAEGDIILKIPEGSLPSVS-GMKTETAVLL-----DSESGEFRA--FGRAARETFIEEREDDEWVLDDGDEVAEQALKVSSTMLFRWFKVALC----EKRGYQSIDDPVIAAEGGQKKPLMHVIATALRHFKEDILKYVMSTGGVPQKAGDLTWVLTIPAIYDDFAKRFMRHAALEAGIISSINSAS-LQLCLEPEAACLAM-SIKEAPLVFRPGANVMIIDCGGGTVDITTHEVISTGPLRLKELLPPTGGPWGSTCIDEAFKKWLENFMGKDK--FVRMRHLASFYTLMLQWEDGKTRFGGGKEDSVRINLGEVSRSLEINASEMKGLRAAFNGAQACADLCVTGGKFLVILPSPVVLSFFSWTIERIGTCLGDLKHSDALRHLSHVFLVGGFSSSPLVQAIAREKLHGDG--CAVVSALRPDVAIVKGAVLFANAAT-VFTTRKARLTYGVKSGIEYDRDNPGHVKNYSQHRQAVGNNGKERISIFSRHIAAGDDIPQDGACDGKTYGPVLDCQTSIIIGILASDKKDIDF-PDEGDCFK-VGEVYVPMDMDIPLGLRGVKVQFTFGGTELFVTAISTSTGEK 1764
            IV AIDLGTSR+A+A ++ GR    I L +P+      +   KT TAVL+     D   G +R   FG  A E ++  +       D+ DE         S +LF++FK+ L     E+R    +D+P   A GG+  P++ V++ A+ + K  IL  V       +    L WV+T+PAI+ +F KRFMR A+  AG+I+  N    L+LCLEPEAACLA+ S  +    + PG  +M++DCGGGT+DIT+H V S+ PL+L EL  P GG WGS+ +D  FK +L+ F         R+      + + ++WE  KTR   G   S+R+++G+++  LE++  E++ LR   N  +   +L V G +  ++LP  +V SFF   I  I   +G    +  L  L ++++VGGF +SPL+Q   RE+    G    VV A RP +A+V GA LF    T  F +RKARLTYGV+    +D ++P HV    Q    V  +G   +  F   +  G D+P     + K   P+ + Q  + + +L + ++ + +  D G   + +  V VP+D  +PL  RGV+V+  FGGTE+ V+      G+K
Sbjct:    6 IVAAIDLGTSRTAYAYTVVGREH--IWLGVPDSPDDDRNVERKTLTAVLMQRCDEDEAEGGWRVAGFGDTAEEDYLTAK------ADEADEDR------GSLVLFKFFKMELYQGGREQRARMDVDEPTAKAVGGEVLPMIFVVSKAIEYIKNQILDRVSMIA--QEDDARLMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVESSNQGVGSWHPGDKIMVLDCGGGTIDITSHLVESSDPLQLSELAEPCGGAWGSSIVDTRFKAFLQEFFDNASGGMTRLEGTHELFAVTVEWERQKTRLARGA--SLRVSIGDIADLLELSPREIEELRKFHNDPKP-KELHVGGTRRNLVLPPALVESFFRGAITAIKDEVGTQLSTPDLHDLCYIYMVGGFCASPLLQDAIREEFDDPGRDLKVVVAPRPGLAVVTGAALFGARGTGAFVSRKARLTYGVRGSRRFDHNDPEHVCREEQ--AVVLGDGSRVLHYFRPVVEKGGDVPVGHVVE-KPLVPMHEAQVFVGLHLLVTRQEAVLYLKDVGVLVQEIASVRVPVDHAVPLRERGVEVRMEFGGTEIAVSCYKQHDGDK 589          
BLAST of mRNA_S-dermatodea_contig8908.17004.1 vs. uniprot
Match: D7G266_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G266_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 4.340e-82
Identity = 212/617 (34.36%), Postives = 318/617 (51.54%), Query Frame = 1
Query:   10 IVVAIDLGTSRSAWAISIQGRAEGDIILKIP---EGSLPSVSGMKTETAVLLD---SESGEFR--AFGRAARETFIEEREDDEWVLDDGDEVAEQALKVSSTMLFRWFKVALCE--KRGYQ--SIDDPV-IAAEGGQKKPLMHVIATALRHFKEDILKYVMSTGGVPQKAGDLTWVLTIPAIYDDFAKRFMRHAALEAGIISSINSAS-LQLCLEPEAACLAMSIKEAPL-VFRPGANVMIIDCGGGTVDITTHEVISTGPLRLKELLPPTGGPWGSTCIDEAFKKWLENFMG--KDKFVRMRHLASFYTLMLQWEDGKTRFGGGKEDSVRINLGEVSRSLEINASEMKGLRAAFN---------GAQACADLCVTGGKFLVILPSPVVLSFFSWTIERIGTCLGDLKHSDALRHLSHVFLVGGFSSSPLVQAIAREKLHGDGCAVVSALRPDVAIVKGAVLFANAATVFTTRKARLTYGVKSGIEYDRDNPGHVKNYSQHRQAVGNNGKERISIFSRHIAAGDDIPQDGACDGKTYGPVLDCQTSIIIGILAS--DKKDIDFPDEGDCFK----VGEVYVPMDMDIPLGLRGVKVQFTFGGTELFVTAISTSTGEK 1764
            ++ AIDLGTSRSA+A ++ GR   DIIL +P     S  SV   KT TA+LL     +SG +    FG  A + ++E R         G E        S   LF++FK+ L +  ++G +  S+DD   I+ +   + PL++V++ AL + K+ ++  +        KA D+ WVLT+PAI+  F   FMR AAL AG+I   N    L+LCLEPEAACL +      +  +  G  VM++DCGGGT+DITTH V+ST PL L+EL  P GGPWGST  D  FK +++  +    +++ R+      + LM  WE  KT    GK  +V I++  +   + ++  + +  R  FN         G++A A     G +  V L   +V +FF   +  I      +        +S V++VGGFS+SPL+Q      +   G  V    RP +AIV GA  +  + +   +RKARLTYG K+  +YD  NP H K   +H + +G  G   +  FS ++  G D+P  G    +T+ P+ + QT++   +  S   K  I +  +    K    +  V  PMDM +P+  RGV +Q +FGGTEL +     S G +
Sbjct:    5 VIAAIDLGTSRSAYAYTVTGR--DDIILGVPGRLNESKVSVE-RKTATAILLKRAPKKSGGWCMVTFGDGAEQEYLEARTK-------GGEAE------SDLALFKYFKMELFKGGRKGTKRSSVDDAEGISEDQKTRLPLIYVVSLALEYIKDVVINRLNKADSHTLKAFDIRWVLTVPAIWSSFGTTFMRTAALRAGLIQRENDMEHLRLCLEPEAACLTVEHHHRNVHKWENGMKVMVLDCGGGTIDITTHHVVSTNPLGLEELEEPAGGPWGSTTADAKFKLFIKELLRCTDEQWARLDKSTEMFELMADWEAKKTDHYPGK--NVWISIAGMLDLVGMSVKDCEASRKQFNETSTVRLKTGSRAPAKAEGMGRR--VSLTPELVSNFFKEAMVEIIKATQTVLARQP--EISVVYMVGGFSASPLLQEHVTAAVQQPGLRVEVVERPGLAIVLGAARYGTSDSTIVSRKARLTYGTKTMTDYDEHNPEHTKRM-KHARYIG--GALYLDTFSCYVEKGIDLPV-GTDKEETFYPLTNEQTAVSFDVCISLKPKAGIKYLKDNGVDKQLSLLKTVSAPMDMSVPMRKRGVSMQLSFGGTELGIKCTRCSDGHE 595          
BLAST of mRNA_S-dermatodea_contig8908.17004.1 vs. uniprot
Match: C3XQY1_BRAFL (Uncharacterized protein (Fragment) n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3XQY1_BRAFL)

HSP 1 Score: 243 bits (619), Expect = 5.850e-69
Identity = 180/593 (30.35%), Postives = 288/593 (48.57%), Query Frame = 1
Query:   10 IVVAIDLGTSRSAWAISIQGRAEGDIILKIPEGSLPSVSGMKTETAVLLDSESGEFRAFGRAARETFIEEREDDEWVLDDGDEVAEQALKVSSTMLFRWFKVALCEKRGYQSIDDPVIAAEGGQKKPLMHVIATALRHFKEDILKYVMSTGGVPQ--KAGDLTWVLTIPAIYDDFAKRFMRHAALEAGIISSINSASLQLCLEPEAA---CLAMSIKEAPLVFRPGANVMIIDCGGGTVDITTHEVISTGPLRLKELLPPTGGPWGSTCIDEAFKKWLENFMGKDKFVRMR--HLASFYTLMLQWEDGKTRFGGGKEDSVRINLGEVSRSLEINASEMKGLRAAFNGAQACADLCVTGGKFLVILPSPVVLSFFSWTIERIGTCLGDLKHSDALRHLSHVFLVGGFSSSPLVQAIAREKLHGDGCAVVSALRPDVAIVKGAVLFANAATVFTTRKARLTYGVKSGIEYDRDN-PGHVKNYSQHRQAVGNNGKERISIFSRHIAAGDDIPQDGACDGKTYGPVLDCQTSIIIGILASDKKDIDFPDEGDCFKVGEVYVPMDMDIPLGLRGVKVQFTFGGTELFVTAISTSTGEK 1764
            +V AID GT+ S +A S    ++  II+    GS       KTET+VLL  E GEF+AFG  A + + +  E D                      F  FK+ L  ++      D  I    G+K P + + A A+R+ K+ +L  +  T       +  D+ WVLT+PAI+DD AK+FMR AA +AGI S      L + LEPEAA   C   S +   L  +PG   MI+DCGGGTVDIT HE+   G  ++KE+   +GG WG T +D AF   L+N  G D   + R  H   +  L+ ++E  K   G G  + V ++LG           E    + A     +  ++  + G  ++ +   V+ SFF+  I+ I   L  L  ++ +  L ++F+VGGFS SP++Q   +EK  G  C V+      ++I+KGAV+F +  +    RK++ TYG    + ++R++ P  +K +   +            +F++ + AG  +   G      + P    Q ++ I I  ++++++ + D+    K G V V +   IP   R V+   TF  TE+ + A +  +G++
Sbjct:    6 LVAAIDFGTTFSGYAFSFAS-SKNTIIMNKNWGSESGFQLHKTETSVLLTPE-GEFKAFGSEASKAYADLEESD----------------AKEHYYFHRFKMKLHTEKTLSK--DTTIEDVNGKKLPALDIFAHAMRYLKDHMLNAIKLTVSAETTLENDDIRWVLTVPAIWDDSAKQFMRQAAYKAGIASEAKEGQLLIALEPEAAGIFCRQDSTQNHLLDIKPGDRYMIVDCGGGTVDITVHEISENG--KVKEVTTASGGDWGGTKVDVAFLGLLDNIFGADIMTQYRVAHPNEYLILLNEFETKKRSTGPGDSEIVAVHLGYSFFQFYREHKEGCTAQQAIEQYDS-KEVAFSNG--MIRIHHSVMKSFFTPVIDSILAHLDKLVSNEEVTPLKYMFMVGGFSESPILQHAVKEKFQG-ACTVLVPEGCGLSIIKGAVMFGHNPSSIAARKSKYTYGTAVCVPFEREHHPERLKEWIDGKLLC-------TRVFTKFVEAGQ-LVTVGEVSEHVFSPSSLLQPAMGIEIFRTEEREVHYCDDEGVTKCGYVVVRLPPPIPGLTRAVRATLTFAETEIKIDAFALGSGQR 564          
BLAST of mRNA_S-dermatodea_contig8908.17004.1 vs. uniprot
Match: K1P486_CRAGI (Heat shock 70 kDa protein 12A n=3 Tax=Crassostrea TaxID=6564 RepID=K1P486_CRAGI)

HSP 1 Score: 238 bits (608), Expect = 2.840e-67
Identity = 194/610 (31.80%), Postives = 295/610 (48.36%), Query Frame = 1
Query:   10 IVVAIDLGTSRSAWAISIQGRAEGDIILKIPEGSLPSVSGM---KTETAVLLDSESGEFRAFGRAARETFIEEREDDEWVLDDGDEVAEQALKVSSTMLFRWFKVALCEKRGYQSIDDPVIAAEGGQKKPLMHVIATALRHFKEDILKYVMSTGGVPQKAGDLTWVLTIPAIYDDFAKRFMRHAALEAGIISSINSASLQLCLEPEAACLAMSIKEAPL-----------VFRPGANVMIIDCGGGTVDITTHEVISTGPLRLKELLPPTGGPWGSTCIDEAFKKWLENFMGK---DKFVRMRHLASFYTLMLQWEDGKTRFGGGKEDSVRINLGEVSRSLEINASEMKGLRAA------FNGAQACADLCVTGGKFLVILPSPVVLSFFSWTIERIGTCLGDLKHSDALRHLSHVFLVGGFSSSPLVQAIAREKLHGDGCAVVSALRPDVAIVKGAVLFANAATVFTTRKARLTYGVKSGIEYDRDNPGHVKNYSQHRQAVGNNGKERIS-IFSRHIAAGDDIPQDGACDGKTYGPVLDCQTSIIIGILASDKKDIDFPDEGDCFKVGEVYVPMDMDIPL--GLRGVKVQFTFGGTELFVTAISTSTGE 1761
            +  AID GT+ S +  S +   E D +           +G+   KT T VLLDS   E  AFG  A + + E  ED+E                +    FR FK++L +     + D  +    GG++   + V A A+R+ K+ +L   +   G   KA D+ WVLT+PAI++D AK+FMR AA EAGI  +     L + LEPEAA  ++  K  P+            F+PG+  +++D GGGTVDIT HEV   G   LKEL   +GG WG T +DE+FK+ LE  +G    ++F  + H A +  L   +E  K      K+DS     G+++  + I   E+  +RA           +   DL   G +  +  P  V L  FS   + +   +  L  S  +R  +++ +VGGFS SPL+Q   RE+     C V+      +A++KGAV+F +       R ++ TYG+ +  ++DR      K+     + V   GKE+   +F +H++ G  +  D     K+Y P+   QT + + +  S  +D  F DE +C  +G++ V    DIP     + V   F FGGTEL V A+  STGE
Sbjct:   10 MTAAIDFGTTYSGYCFSFRHEFENDPLKVSANTWTAGTAGLVSLKTPTTVLLDSNQ-ELVAFGYEAEDRYAELAEDEEH---------------AEYYYFRRFKMSLFQSSSRLTRDTMLKDMAGGKQAKAIKVFAHAIRYLKDHMLN-TLEQRGAGIKAKDINWVLTVPAIWEDPAKQFMREAAEEAGISRN----QLMIALEPEAA--SLFCKYLPIEKLQGSEGGIGAFKPGSRYLVLDAGGGTVDITVHEVQFNG--TLKELDKASGGAWGGTRVDESFKEMLEEIVGGGMLEEFA-LSHTADYIDLFRDFETKKRNV---KDDSP----GKITLRIPITLQELYEVRAEEEIKKRIRQTKYKDDLTWVGDRLRIDKPRFVEL--FSAACDGMVDHVKKLLKSPKVRGTNNILMVGGFSESPLLQKRIREEFPS--CRVIIPQEAGLAVLKGAVIFGHQPATIAARISKYTYGISTNTKFDRS-----KHPMSKLKMV--EGKEKCKDVFDKHVSIGQLLEIDDVQSEKSYWPLYSNQTQVSLPVYTSTIEDPSFVDEPECSYLGKLTV----DIPKHGSDKEVSSSFIFGGTELKVQAVVKSTGE 571          
BLAST of mRNA_S-dermatodea_contig8908.17004.1 vs. uniprot
Match: A0A8J9ZX80_BRALA (HSPA12A protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZX80_BRALA)

HSP 1 Score: 236 bits (601), Expect = 4.540e-66
Identity = 186/599 (31.05%), Postives = 284/599 (47.41%), Query Frame = 1
Query:   10 IVVAIDLGTSRSAWAISIQGRAEGDIILKIPEGSLPSVSGMKTETAVLLDSESGEFRAFGRAARETFIEEREDDEWVLDDGDEVAEQALKVSSTMLFRWFKVALCEKRGYQSIDDPVIAAEGGQKKPLMHVIATALRHFKEDILKYVMSTGG--VPQKAGDLTWVLTIPAIYDDFAKRFMRHAALEAGIISSINSASLQLCLEPEAA---CLAMSIKEAPLVFRPGANVMIIDCGGGTVDITTHEVISTGPLRLKELLPPTGGPWGSTCIDEAFKKWLENFMGKDKFVRMR--HLASFYTLMLQWEDGKTRFGGGKEDSVRINLGEVSRSLEINASEMKGLRAAFNGAQACADLCVTGGKFLVILPSPVVLSFFSWTIERIGTCLGDLKHSDALRHLSHVFLVGGFSSSPLVQAIAREKLHGDGCAVVSALRPDVAIVKGAVLFANAATVFTTRKARLTYGVKSGIEYDRDNPGHVKNYSQHRQAVGNNGKERIS-------IFSRHIAAGDDIPQDGACDGKTYGPVLDCQTSIIIGILASDKKDIDFPDEGDCFKVGEVYVPMDMDIPLGLRGVKVQFTFGGTELFVTAISTSTGEK 1764
            +V AID GT+ S +A S     E +II+    GS       KTET+VLL  E GEF+AFG  A +T+ +        L++GD         +    F  FK+ L  ++      D  I    G+K P + + A A+R+ K+ +L  +  T       +  D+ WVLT+PAI+DD AK+FMR AA +A I S      L + LEPEAA   C      +  +   PG   MI+DCGGGTVDIT H +   G  ++KE+   +GG WG T +DE F K L+   G D   R +  H   +  L+ ++E  K   G    + V ++LG      +       G        Q  ++  V     L+ +   ++ SFF+  I+ I   L  L     +  L ++F+VGGFS SP++Q   +EK  G  C V+      ++I+KGAV+F +  +    RK++ TYG    + ++   P H      H + +    KERI        +FS+ + AG  +   G     ++ P      ++ I I  + +K++ + D+    K G V V +   IP   R V+   TF GTE+ V A +   GE+
Sbjct:   37 LVAAIDFGTTFSGYAFSFTSN-EDNIIMNKNWGSESGFLAHKTETSVLLTPE-GEFKAFGSEASKTYAD--------LEEGD--------AARHYYFHRFKMKLHTEKSLSK--DTTIEDVNGKKLPALDIFAHAMRYLKDHMLNAIKLTVSRETTLENDDICWVLTVPAIWDDSAKQFMRQAAYKAEIASESKEGQLLIALEPEAAGIFCRRDPTLKQLVDINPGDRYMIVDCGGGTVDITVHGISENG--KVKEVATASGGDWGGTKVDEEFLKLLDKIFGADIMARYKVEHPNEYLNLLNEFETKKRSTGPSDTEKVAVHLG--FSFFQFYPQHKDGCTVQEAIKQYDSEQ-VDFSNGLIRISHSLMKSFFTPVIDSILAHLDQLLTQGEITPLKYMFMVGGFSESPILQYAVKEKFQGP-CTVLIPEGCGLSIIKGAVMFGHNPSSIAARKSKYTYGTAVCVPFE---PEH------HPERL----KERIDGKLVCTKVFSKFVEAGQ-LVAVGEVSEHSFSPASLFSPAMGIEIFRTKEKEVHYCDDEGVTKCGYVVVALPPPIPGLPRSVRATLTFSGTEIKVDAFALGNGER 595          
BLAST of mRNA_S-dermatodea_contig8908.17004.1 vs. uniprot
Match: C3XQW1_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3XQW1_BRAFL)

HSP 1 Score: 228 bits (580), Expect = 2.940e-63
Identity = 181/613 (29.53%), Postives = 291/613 (47.47%), Query Frame = 1
Query:   10 IVVAIDLGTSRSAWAISIQGRAEGDIILKIPEGSLPSVSGMKTETAVLLDSESGEFRAFGRAARETFIEEREDDEWVLDDGDEVAEQALKVSSTMLFRWFKVALCEKRGYQSIDDPVIAAEGGQKKPLMHVIATALRHFKEDILKYVMSTGG---VPQKAGDLTWVLTIPAIYDDFAKRFMRHAALEAGIISSINSASLQLCLEPEAA---CLAMSIKEAPLVFRPGANVMIIDCGGGTVDITTHEVISTGPLRLKELLPPTGGPWGSTCIDEAFKKWLENFMGKDKFVRMRHL-ASFYTLMLQWEDGKTR------FGGGKEDSVRINLG--------------EVSRSLEINASEMKGLRAAFNGAQACADLCVTGGKFLVILPSPVVLSFFSWTIERIGTCLGDLKHSDALRHLSHVFLVGGFSSSPLVQAIAREKLHGDGCAVVSALRPDVAIVKGAVLFANAATVFTTRKARLTYGVKSGIEYDRDN-PGHVKNYSQHRQAVGNNGKERISIFSRHIAAGDDIPQDGACDGKTYGPVLDCQTSIIIGILASDKKDIDFPDEGDCFKVGEVYVPMDMDIPLGLRGVKVQFTFGGTELFVTAISTSTGEK 1764
            +V AID GT+ S +A S    ++ DII+    GS       KTET+VLL+ E GEF+AFG  A + + +  E D                      F  FK+ L  ++     +D  I    G+K P + + A A+R  K+ +LK +  T     +  +  D+ WVLT+PAI+DD AK+FMR AA +AGI S      L + LEPEAA   C     K+  +  +PG   MI+DCGGGTVDIT HE+      R+ E+   +GG WG T +D+ F K L+N  G +   R +    + Y ++L   + K R             +V I LG               V +++E+   + + ++              T G F +     V+ SFF   I  I   L  L   + +  L ++F+VGGFS SP++Q   +E+  G  C V+      ++IV+GAV+F +  +    R+++ TYG    + ++ ++ P  ++ + +      N       +F + + AG  +   G      + P+ + Q  + IGI  +++K++ + D+    K G+V V +   +    R V+V  TF  TE+ V AI+  +GE+
Sbjct:    6 LVAAIDFGTTFSGYAFSFTS-SKDDIIMNKNWGSESGFQLHKTETSVLLNPE-GEFKAFGFEASKVYADLEESD----------------AKKHYYFHRFKMKLHTEKTLS--EDTTIEDVNGKKLPALDIFAHAMRFLKKHMLKAIELTVADDEITIEDDDIRWVLTVPAIWDDSAKQFMRQAAYKAGIASESKKGQLLIALEPEAAGIFCRHDLTKKKLVNLKPGDRYMIVDCGGGTVDITVHELNKND--RVTEVTTASGGGWGGTKVDQEFLKLLDNIFGVEIMARYKSAHPTEYLIILNLFETKKRSTVPSPHPPHDSGAVVIPLGYNFFHFYPKHKEGCTVKQAIELYDHDYEQVK-------------FTNGMFRMY--HSVMKSFFKPAINSILAHLSPLLTQETISPLKYIFMVGGFSESPILQHAVKERFKG-ACTVLVPDGCGLSIVRGAVMFGHNPSSIAARRSKYTYGTSVCVPFEPEHHPARLRKWMEGELKCTN-------VFKKFVEAGQ-LVAVGEVSEHVFSPIWEVQAVMGIGIFRTEEKEVHYCDDEGVTKCGDVDVALPSAVSGLTRSVRVILTFAETEIKVDAIALGSGER 572          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8908.17004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5B9_9PHAE6.040e-15846.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6V4_ECTSI5.190e-13642.18Heat shock protein 70 n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JSM6_9PHAE9.030e-12640.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKB7_ECTSI1.210e-12038.99Heat shock protein 70 n=2 Tax=Ectocarpus TaxID=287... [more]
D7FNB5_ECTSI5.700e-9235.15Heat shock protein 70-putative n=2 Tax=Ectocarpus ... [more]
D7G266_ECTSI4.340e-8234.36Heat shock protein 70 n=1 Tax=Ectocarpus siliculos... [more]
C3XQY1_BRAFL5.850e-6930.35Uncharacterized protein (Fragment) n=2 Tax=Branchi... [more]
K1P486_CRAGI2.840e-6731.80Heat shock 70 kDa protein 12A n=3 Tax=Crassostrea ... [more]
A0A8J9ZX80_BRALA4.540e-6631.05HSPA12A protein n=1 Tax=Branchiostoma lanceolatum ... [more]
C3XQW1_BRAFL2.940e-6329.53Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8908contigS-dermatodea_contig8908:6399..8657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score249.6
Seed ortholog evalue3.6e-63
Seed eggNOG ortholog7739.XP_002613567.1
EggNOG free text desc.ATP binding
EggNOG OGs38CTR@33154,3BB5B@33208,3CW3Q@33213,482VY@7711,COG0443@1,KOG0101@2759
COG Functional cat.O
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1767
Cds size1767
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925372.59273-CDS-S-dermatodea_contig8908:6398..74031622925372.59273-CDS-S-dermatodea_contig8908:6398..7403Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8908 6399..7403 +
1694079889.0420976-CDS-S-dermatodea_contig8908:6398..74031694079889.0420976-CDS-S-dermatodea_contig8908:6398..7403Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8908 6399..7403 +
1622925372.6088054-CDS-S-dermatodea_contig8908:7895..86571622925372.6088054-CDS-S-dermatodea_contig8908:7895..8657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8908 7896..8657 +
1694079889.057218-CDS-S-dermatodea_contig8908:7895..86571694079889.057218-CDS-S-dermatodea_contig8908:7895..8657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8908 7896..8657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8908.17004.1prot_S-dermatodea_contig8908.17004.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8908 6399..8657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8908.17004.1

>prot_S-dermatodea_contig8908.17004.1 ID=prot_S-dermatodea_contig8908.17004.1|Name=mRNA_S-dermatodea_contig8908.17004.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=589bp
MSKIVVAIDLGTSRSAWAISIQGRAEGDIILKIPEGSLPSVSGMKTETAV
LLDSESGEFRAFGRAARETFIEEREDDEWVLDDGDEVAEQALKVSSTMLF
RWFKVALCEKRGYQSIDDPVIAAEGGQKKPLMHVIATALRHFKEDILKYV
MSTGGVPQKAGDLTWVLTIPAIYDDFAKRFMRHAALEAGIISSINSASLQ
LCLEPEAACLAMSIKEAPLVFRPGANVMIIDCGGGTVDITTHEVISTGPL
RLKELLPPTGGPWGSTCIDEAFKKWLENFMGKDKFVRMRHLASFYTLMLQ
WEDGKTRFGGGKEDSVRINLGEVSRSLEINASEMKGLRAAFNGAQACADL
CVTGGKFLVILPSPVVLSFFSWTIERIGTCLGDLKHSDALRHLSHVFLVG
GFSSSPLVQAIAREKLHGDGCAVVSALRPDVAIVKGAVLFANAATVFTTR
KARLTYGVKSGIEYDRDNPGHVKNYSQHRQAVGNNGKERISIFSRHIAAG
DDIPQDGACDGKTYGPVLDCQTSIIIGILASDKKDIDFPDEGDCFKVGEV
YVPMDMDIPLGLRGVKVQFTFGGTELFVTAISTSTGEKR
back to top

mRNA from alignment at S-dermatodea_contig8908:6399..8657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8908.17004.1 ID=mRNA_S-dermatodea_contig8908.17004.1|Name=mRNA_S-dermatodea_contig8908.17004.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2259bp|location=Sequence derived from alignment at S-dermatodea_contig8908:6399..8657+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGAAGATAGTGGTGGCAATCGATCTGGGGACCAGCCGCAGCGCGTG GGCCATCTCCATCCAGGGGAGAGCGGAGGGTGACATCATTCTCAAGATAC CCGAGGGCAGCCTTCCTTCCGTTTCTGGCATGAAGACCGAAACGGCCGTC CTTCTGGATTCCGAGAGTGGTGAATTTCGGGCATTTGGACGCGCAGCGCG CGAAACGTTCATCGAGGAAAGGGAAGACGACGAGTGGGTTCTTGACGACG GCGATGAGGTGGCGGAGCAAGCATTGAAAGTCTCGAGCACGATGCTCTTC CGGTGGTTCAAGGTAGCCCTGTGCGAGAAGCGTGGGTACCAGTCTATTGA TGATCCAGTCATTGCTGCCGAGGGAGGTCAGAAGAAGCCCCTGATGCACG TCATTGCCACGGCGCTTCGCCATTTTAAGGAGGATATACTGAAGTACGTT ATGTCCACTGGCGGGGTCCCGCAGAAGGCGGGCGATCTGACCTGGGTTCT CACGATACCGGCAATTTACGATGACTTCGCCAAGAGGTTTATGCGCCATG CAGCCTTAGAAGCCGGAATCATCAGCTCTATCAATAGCGCGAGCTTGCAG CTCTGTCTCGAACCGGAAGCAGCATGTCTGGCCATGAGCATCAAGGAGGC TCCGCTTGTGTTCCGGCCGGGTGCGAACGTAATGATAATCGATTGCGGTG GGGGAACAGTTGACATTACCACCCATGAAGTCATCTCCACGGGTCCCCTG CGCCTGAAGGAGCTGCTGCCCCCTACCGGAGGGCCATGGGGCTCAACTTG CATCGACGAGGCCTTCAAGAAGTGGCTGGAGAACTTTATGGGGAAAGATA AATTCGTCCGGATGCGACACTTGGCGTCGTTCTACACCCTCATGCTTCAA TGGGAAGACGGCAAGACGCGGTTTGGCGGAGGAAAGGAGGACAGCGTTCG AATCAACCTCGGTGAAGTTTCACGCAGCCTAGAGATTAACGCTTCCGAGA TGAAGGTAAACGTCGACGGCGCTTCTTGTCGCGCGACCGAAGTAAGATAT TGGTGTATGGCGCACACGCCTGCTCTGCATGTTTCTGCGCTTTTGAATGT GATAACCTGTGTACACCCAAGGTGGCCCTTTTGCTTTTTGTAGCCCGAAT TTGCTGAATACGTCACCCAAAGTGTTGGTGTCGTCCACAGTCCTCCACGC TTGTTGTGGCGTAGGATATGTGAGGTCGGGTCACGGGTGCATGCGGCTTC TCGAACGATCTAACCTTTCTCAAACCCTTCTCCTAGCAGAATCGTAGCAA TGTGTCCTATTGAAGTAGTAATAGGGTGGATGGAGTCATGGAGATGTATC GCGAAACTGTTTTTTTTTACATATTTTCGTCAACCGCCTGACATTGCCAA CGCATCGCATCATGCTGTGTCACCTTGAGCAGTGTCTGCCTCGCCGATAT CCGAACCGTCGTTAATCTGTGGAACACAATATTATATATTCTCCCAGGGT CTACGGGCCGCTTTCAACGGTGCGCAGGCGTGCGCAGACCTATGCGTCAC GGGTGGCAAATTCCTTGTCATCCTTCCGTCTCCGGTGGTTTTGTCCTTCT TTAGCTGGACTATCGAGCGTATCGGTACCTGCCTGGGGGATCTCAAGCAC TCGGACGCCCTTCGCCATCTTTCGCACGTCTTCCTTGTGGGGGGATTTTC GTCCAGCCCTCTGGTCCAGGCGATTGCCCGTGAGAAGCTCCACGGAGACG GATGTGCCGTTGTGTCCGCCCTTCGGCCGGACGTAGCTATCGTGAAGGGG GCTGTGCTCTTTGCCAACGCCGCCACCGTCTTCACAACTCGCAAGGCCCG CCTCACGTACGGGGTGAAGTCGGGGATCGAATACGACAGGGACAACCCAG GGCATGTCAAGAACTACTCTCAGCACCGTCAAGCTGTGGGAAATAACGGA AAGGAGAGAATCTCTATATTCTCGCGCCACATCGCTGCGGGTGACGATAT TCCTCAGGACGGTGCGTGCGACGGAAAGACGTACGGCCCTGTGCTCGACT GTCAGACATCTATCATCATCGGCATCTTAGCGAGCGACAAGAAGGACATC GATTTCCCCGACGAAGGTGACTGCTTCAAGGTAGGAGAGGTATACGTGCC TATGGACATGGACATCCCGCTCGGTCTTCGCGGTGTGAAGGTCCAATTCA CTTTTGGCGGAACAGAACTTTTCGTTACCGCCATCAGCACGAGTACCGGA GAAAAAAGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8908:6399..8657+

>mRNA_S-dermatodea_contig8908.17004.1 ID=mRNA_S-dermatodea_contig8908.17004.1|Name=mRNA_S-dermatodea_contig8908.17004.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3534bp|location=Sequence derived from alignment at S-dermatodea_contig8908:6399..8657+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGAAGATAGTGGTGGCAATCGATCTGGGGACCAGCCGCAGCGCGTG
GGCCATCTCCATCCAGGGGAGAGCGGAGGGTGACATCATTCTCAAGATAC
CCGAGGGCAGCCTTCCTTCCGTTTCTGGCATGAAGACCGAAACGGCCGTC
CTTCTGGATTCCGAGAGTGGTGAATTTCGGGCATTTGGACGCGCAGCGCG
CGAAACGTTCATCGAGGAAAGGGAAGACGACGAGTGGGTTCTTGACGACG
GCGATGAGGTGGCGGAGCAAGCATTGAAAGTCTCGAGCACGATGCTCTTC
CGGTGGTTCAAGGTAGCCCTGTGCGAGAAGCGTGGGTACCAGTCTATTGA
TGATCCAGTCATTGCTGCCGAGGGAGGTCAGAAGAAGCCCCTGATGCACG
TCATTGCCACGGCGCTTCGCCATTTTAAGGAGGATATACTGAAGTACGTT
ATGTCCACTGGCGGGGTCCCGCAGAAGGCGGGCGATCTGACCTGGGTTCT
CACGATACCGGCAATTTACGATGACTTCGCCAAGAGGTTTATGCGCCATG
CAGCCTTAGAAGCCGGAATCATCAGCTCTATCAATAGCGCGAGCTTGCAG
CTCTGTCTCGAACCGGAAGCAGCATGTCTGGCCATGAGCATCAAGGAGGC
TCCGCTTGTGTTCCGGCCGGGTGCGAACGTAATGATAATCGATTGCGGTG
GGGGAACAGTTGACATTACCACCCATGAAGTCATCTCCACGGGTCCCCTG
CGCCTGAAGGAGCTGCTGCCCCCTACCGGAGGGCCATGGGGCTCAACTTG
CATCGACGAGGCCTTCAAGAAGTGGCTGGAGAACTTTATGGGGAAAGATA
AATTCGTCCGGATGCGACACTTGGCGTCGTTCTACACCCTCATGCTTCAA
TGGGAAGACGGCAAGACGCGGTTTGGCGGAGGAAAGGAGGACAGCGTTCG
AATCAACCTCGGTGAAGTTTCACGCAGCCTAGAGATTAACGCTTCCGAGA
TGAAGATGTCGAAGATAGTGGTGGCAATCGATCTGGGGACCAGCCGCAGC
GCGTGGGCCATCTCCATCCAGGGGAGAGCGGAGGGTGACATCATTCTCAA
GATACCCGAGGGCAGCCTTCCTTCCGTTTCTGGCATGAAGACCGAAACGG
CCGTCCTTCTGGATTCCGAGAGTGGTGAATTTCGGGCATTTGGACGCGCA
GCGCGCGAAACGTTCATCGAGGAAAGGGAAGACGACGAGTGGGTTCTTGA
CGACGGCGATGAGGTGGCGGAGCAAGCATTGAAAGTCTCGAGCACGATGC
TCTTCCGGTGGTTCAAGGTAGCCCTGTGCGAGAAGCGTGGGTACCAGTCT
ATTGATGATCCAGTCATTGCTGCCGAGGGAGGTCAGAAGAAGCCCCTGAT
GCACGTCATTGCCACGGCGCTTCGCCATTTTAAGGAGGATATACTGAAGT
ACGTTATGTCCACTGGCGGGGTCCCGCAGAAGGCGGGCGATCTGACCTGG
GTTCTCACGATACCGGCAATTTACGATGACTTCGCCAAGAGGTTTATGCG
CCATGCAGCCTTAGAAGCCGGAATCATCAGCTCTATCAATAGCGCGAGCT
TGCAGCTCTGTCTCGAACCGGAAGCAGCATGTCTGGCCATGAGCATCAAG
GAGGCTCCGCTTGTGTTCCGGCCGGGTGCGAACGTAATGATAATCGATTG
CGGTGGGGGAACAGTTGACATTACCACCCATGAAGTCATCTCCACGGGTC
CCCTGCGCCTGAAGGAGCTGCTGCCCCCTACCGGAGGGCCATGGGGCTCA
ACTTGCATCGACGAGGCCTTCAAGAAGTGGCTGGAGAACTTTATGGGGAA
AGATAAATTCGTCCGGATGCGACACTTGGCGTCGTTCTACACCCTCATGC
TTCAATGGGAAGACGGCAAGACGCGGTTTGGCGGAGGAAAGGAGGACAGC
GTTCGAATCAACCTCGGTGAAGTTTCACGCAGCCTAGAGATTAACGCTTC
CGAGATGAAGGGTCTACGGGCCGCTTTCAACGGTGCGCAGGCGTGCGCAG
ACCTATGCGTCACGGGTGGCAAATTCCTTGTCATCCTTCCGTCTCCGGTG
GTTTTGTCCTTCTTTAGCTGGACTATCGAGCGTATCGGTACCTGCCTGGG
GGATCTCAAGCACTCGGACGCCCTTCGCCATCTTTCGCACGTCTTCCTTG
TGGGGGGATTTTCGTCCAGCCCTCTGGTCCAGGCGATTGCCCGTGAGAAG
CTCCACGGAGACGGATGTGCCGTTGTGTCCGCCCTTCGGCCGGACGTAGC
TATCGTGAAGGGGGCTGTGCTCTTTGCCAACGCCGCCACCGTCTTCACAA
CTCGCAAGGCCCGCCTCACGTACGGGGTGAAGTCGGGGATCGAATACGAC
AGGGACAACCCAGGGCATGTCAAGAACTACTCTCAGCACCGTCAAGCTGT
GGGAAATAACGGAAAGGAGAGAATCTCTATATTCTCGCGCCACATCGCTG
CGGGTGACGATATTCCTCAGGACGGTGCGTGCGACGGAAAGACGTACGGC
CCTGTGCTCGACTGTCAGACATCTATCATCATCGGCATCTTAGCGAGCGA
CAAGAAGGACATCGATTTCCCCGACGAAGGTGACTGCTTCAAGGTAGGAG
AGGTATACGTGCCTATGGACATGGACATCCCGCTCGGTCTTCGCGGTGTG
AAGGTCCAATTCACTTTTGGCGGAACAGAACTTTTCGTTACCGCCATCAG
CACGAGTACCGGAGAAAAAAGGGGTCTACGGGCCGCTTTCAACGGTGCGC
AGGCGTGCGCAGACCTATGCGTCACGGGTGGCAAATTCCTTGTCATCCTT
CCGTCTCCGGTGGTTTTGTCCTTCTTTAGCTGGACTATCGAGCGTATCGG
TACCTGCCTGGGGGATCTCAAGCACTCGGACGCCCTTCGCCATCTTTCGC
ACGTCTTCCTTGTGGGGGGATTTTCGTCCAGCCCTCTGGTCCAGGCGATT
GCCCGTGAGAAGCTCCACGGAGACGGATGTGCCGTTGTGTCCGCCCTTCG
GCCGGACGTAGCTATCGTGAAGGGGGCTGTGCTCTTTGCCAACGCCGCCA
CCGTCTTCACAACTCGCAAGGCCCGCCTCACGTACGGGGTGAAGTCGGGG
ATCGAATACGACAGGGACAACCCAGGGCATGTCAAGAACTACTCTCAGCA
CCGTCAAGCTGTGGGAAATAACGGAAAGGAGAGAATCTCTATATTCTCGC
GCCACATCGCTGCGGGTGACGATATTCCTCAGGACGGTGCGTGCGACGGA
AAGACGTACGGCCCTGTGCTCGACTGTCAGACATCTATCATCATCGGCAT
CTTAGCGAGCGACAAGAAGGACATCGATTTCCCCGACGAAGGTGACTGCT
TCAAGGTAGGAGAGGTATACGTGCCTATGGACATGGACATCCCGCTCGGT
CTTCGCGGTGTGAAGGTCCAATTCACTTTTGGCGGAACAGAACTTTTCGT
TACCGCCATCAGCACGAGTACCGGAGAAAAAAGG
back to top