mRNA_S-dermatodea_contig8848.16969.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8848.16969.1
Unique NamemRNA_S-dermatodea_contig8848.16969.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8848.16969.1 vs. uniprot
Match: D8LEC5_ECTSI (Tup_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC5_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 8.910e-51
Identity = 85/95 (89.47%), Postives = 90/95 (94.74%), Query Frame = 1
Query:   16 VWDLGPGSEGRLSPQAQTLPGGHSDYVLSVCFSQDGKYIISGSKDRSVTIWDAKLMKRVATVTGFKNSVIGVSASPTKGTFATGSGDNLVCVWHY 300
            VWDLGPGSEGRLSPQA+TLPGGH DYVLSVCFSQDGKYIISGSKDRSVT+WDA+LMKRVAT+TGFKNSVIGVSASP    FATGSGDNLVCVW+Y
Sbjct:  701 VWDLGPGSEGRLSPQAKTLPGGHKDYVLSVCFSQDGKYIISGSKDRSVTMWDARLMKRVATITGFKNSVIGVSASPFNSMFATGSGDNLVCVWNY 795          
BLAST of mRNA_S-dermatodea_contig8848.16969.1 vs. uniprot
Match: A0A8H7XVE7_PSICU (Tup_N domain-containing protein n=1 Tax=Psilocybe cubensis TaxID=181762 RepID=A0A8H7XVE7_PSICU)

HSP 1 Score: 85.9 bits (211), Expect = 1.900e-17
Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   79 GHSDYVLSVCFSQDGKYIISGSKDRSVTIWDAKLMKRVATVTGFKNSVIGVSASPTKGTFATGSGDNLVCVWHY 300
            GH DYVL+VC S D ++++SGSKDR+V  WD K      T+ G KNSVI ++ +P  G FATGSGDN   +W Y
Sbjct:  519 GHKDYVLAVCVSSDNRWVVSGSKDRTVHFWDLKSATLQLTLQGHKNSVISLNMNPLGGMFATGSGDNTARIWTY 592          
BLAST of mRNA_S-dermatodea_contig8848.16969.1 vs. uniprot
Match: A0A6H5JC28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC28_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 7.890e-17
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1
Query:  163 IWDAKLMKRVATVTGFKNSVIGVSASPTKGTFATGSGDNLVCVWHY 300
            +WDA+LMKRVAT+TGFKNSVIGVSASP    FATGSGDNLVCVW+Y
Sbjct:    1 MWDARLMKRVATITGFKNSVIGVSASPLNSMFATGSGDNLVCVWNY 46          
BLAST of mRNA_S-dermatodea_contig8848.16969.1 vs. uniprot
Match: A0A167L5U2_CALVF (Transcriptional repressor rco-1 n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167L5U2_CALVF)

HSP 1 Score: 80.5 bits (197), Expect = 1.020e-15
Identity = 43/92 (46.74%), Postives = 53/92 (57.61%), Query Frame = 1
Query:   43 GRLSPQAQTLP-GGHSDYVLSVCFSQDGKYIISGSKDRSVTIWDAKLMKRVATVTGFKNSVIGVSAS-----PTKGTFATGSGDNLVCVWHY 300
            GR+  + +T+  GGH DYVLSV  S DGK+I+SGSKDR V  WD +       + G KNSVI +  S     P  G  ATGSGD    +W Y
Sbjct:  268 GRIMERRETMTFGGHKDYVLSVAMSPDGKWIVSGSKDRGVQFWDPRTATTQFVLQGHKNSVISIDMSGGQGPPGSGLLATGSGDYQARIWSY 359          
BLAST of mRNA_S-dermatodea_contig8848.16969.1 vs. uniprot
Match: UPI00029F6284 (hypothetical protein n=1 Tax=Agaricus bisporus var. bisporus (strain H97 / ATCC MYA-4626 / FGSC 10389) TaxID=936046 RepID=UPI00029F6284)

HSP 1 Score: 77.8 bits (190), Expect = 6.700e-15
Identity = 38/74 (51.35%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   79 GHSDYVLSVCFSQDGKYIISGSKDRSVTIWDAKLMKRVATVTGFKNSVIGVSASPTKGTFATGSGDNLVCVWHY 300
            GH DYVLSV  S DG++++SGSKDR V  WDAK       + G KNSV  +  SP     ATGSGD L  +W Y
Sbjct:  243 GHKDYVLSVAVSHDGRWVVSGSKDRGVQFWDAKNAVVQCMLQGHKNSVNSIDLSPAGSILATGSGDWLARIWSY 316          
BLAST of mRNA_S-dermatodea_contig8848.16969.1 vs. uniprot
Match: A0A0D2K4B7_9EURO (Uncharacterized protein n=1 Tax=Fonsecaea multimorphosa CBS 102226 TaxID=1442371 RepID=A0A0D2K4B7_9EURO)

HSP 1 Score: 72.4 bits (176), Expect = 1.170e-14
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   88 DYVLSVCFSQDGKYIISGSKDRSVTIWDAKLMKRVATVTGFKNSVIGVSASPTKGTFATGSGDNLVCVWHY 300
            DYVLSVC +  G++++SGSKDR V  WD         + G KNSVI V+  PT   FATGSGD    +W Y
Sbjct:    6 DYVLSVCLTPGGEWVMSGSKDRGVQFWDPNTGNAQMMLQGHKNSVISVAPCPTGHLFATGSGDMKARIWQY 76          
BLAST of mRNA_S-dermatodea_contig8848.16969.1 vs. uniprot
Match: A0A1J8PGI6_9AGAM (C2H2-type domain-containing protein n=1 Tax=Rhizopogon vesiculosus TaxID=180088 RepID=A0A1J8PGI6_9AGAM)

HSP 1 Score: 77.8 bits (190), Expect = 1.300e-14
Identity = 38/74 (51.35%), Postives = 46/74 (62.16%), Query Frame = 1
Query:   79 GHSDYVLSVCFSQDGKYIISGSKDRSVTIWDAKLMKRVATVTGFKNSVIGVSASPTKGTFATGSGDNLVCVWHY 300
            GH+DYVLSV  S DG++I+SGSKDR V  WD+        + G KNSVI +  SP  G  ATGSGD    +W Y
Sbjct:  285 GHTDYVLSVAASHDGRWIVSGSKDRGVRFWDSHTGAMQCMLQGHKNSVIDLDLSPAGGILATGSGDWQARIWRY 358          
BLAST of mRNA_S-dermatodea_contig8848.16969.1 vs. uniprot
Match: W4HAK2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAK2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 6.550e-14
Identity = 42/99 (42.42%), Postives = 53/99 (53.54%), Query Frame = 1
Query:   76 GGHSDYVLSVCFSQDGK------------------------YIISGSKDRSVTIWDAKLMKRVATVTGFKNSVIGVSASPTKGTFATGSGDNLVCVWHY 300
            GG SD V +V  S DG+                        +I+SGSKDRSV  WD +  + V +VTG++NSVI V +SPT   FATGSGD   C+W Y
Sbjct:  617 GGPSDGVTNVALSPDGRLLAAASLXXXXXXXXTQTTQLMDRWIMSGSKDRSVIFWDHRTSRSVLSVTGYRNSVINVHSSPTSPYFATGSGDAFACIWKY 715          
BLAST of mRNA_S-dermatodea_contig8848.16969.1 vs. uniprot
Match: A0A3L6URY3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6URY3_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.640e-14
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   82 HSDYVLSVCFSQDG--KYIISGSKDRSVTIWDAKLMKRVATVTGFKNSVIGVSASPTKGTFATGSGDNLVCVWHY 300
            +S Y   +    DG  ++I+SGSKDRSV  WD +  + V +VTG++NSVI V +SPT   FATGSGD   C+W Y
Sbjct:  162 NSRYDCCLVRGADGLDRWIMSGSKDRSVIFWDHRTSRSVLSVTGYRNSVINVHSSPTSPYFATGSGDCFACIWKY 236          
BLAST of mRNA_S-dermatodea_contig8848.16969.1 vs. uniprot
Match: M5G8R1_DACPD (WD40 repeat-like protein n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5G8R1_DACPD)

HSP 1 Score: 75.1 bits (183), Expect = 1.160e-13
Identity = 41/92 (44.57%), Postives = 52/92 (56.52%), Query Frame = 1
Query:   43 GRLSPQAQTLP-GGHSDYVLSVCFSQDGKYIISGSKDRSVTIWDAKLMKRVATVTGFKNSVIGVSAS-----PTKGTFATGSGDNLVCVWHY 300
            GR+  + +++  GGH DYVLSV  S DGK+I+SGSKDR V  W+         + G KNSVI +  S     P  G  ATGSGD    +W Y
Sbjct:  478 GRIVERRESMTLGGHRDYVLSVAMSPDGKWIVSGSKDRGVQFWNPHTATTQFVLQGHKNSVISIDMSGGQGPPGSGLLATGSGDYQARIWSY 569          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8848.16969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEC5_ECTSI8.910e-5189.47Tup_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A8H7XVE7_PSICU1.900e-1752.70Tup_N domain-containing protein n=1 Tax=Psilocybe ... [more]
A0A6H5JC28_9PHAE7.890e-1782.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A167L5U2_CALVF1.020e-1546.74Transcriptional repressor rco-1 n=1 Tax=Calocera v... [more]
UPI00029F62846.700e-1551.35hypothetical protein n=1 Tax=Agaricus bisporus var... [more]
A0A0D2K4B7_9EURO1.170e-1449.30Uncharacterized protein n=1 Tax=Fonsecaea multimor... [more]
A0A1J8PGI6_9AGAM1.300e-1451.35C2H2-type domain-containing protein n=1 Tax=Rhizop... [more]
W4HAK2_9STRA6.550e-1442.42Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A3L6URY3_9STRA7.640e-1449.33Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
M5G8R1_DACPD1.160e-1344.57WD40 repeat-like protein n=1 Tax=Dacryopinax primo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8848contigS-dermatodea_contig8848:6319..7221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.8
Seed ortholog evalue1.6e-43
Seed eggNOG ortholog2880.D8LEC5
Preferred nameTUP1
KEGG koko:K06666,ko:K14963
KEGG Pathwayko04011,ko04111,ko04934,map04011,map04111,map04934
GOsGO:0000003,GO:0000122,GO:0000228,GO:0000429,GO:0000430,GO:0000433,GO:0000785,GO:0000790,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001196,GO:0001198,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006355,GO:0006357,GO:0006950,GO:0006970,GO:0006996,GO:0007154,GO:0007155,GO:0007530,GO:0007531,GO:0007532,GO:0007584,GO:0008150,GO:0008289,GO:0009267,GO:0009372,GO:0009405,GO:0009605,GO:0009607,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016458,GO:0016584,GO:0017053,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019747,GO:0019899,GO:0022414,GO:0022607,GO:0022610,GO:0030154,GO:0030447,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032502,GO:0032879,GO:0032991,GO:0033554,GO:0033993,GO:0034728,GO:0035091,GO:0035690,GO:0035950,GO:0035952,GO:0035953,GO:0035955,GO:0036033,GO:0036166,GO:0036170,GO:0036171,GO:0036180,GO:0040007,GO:0040008,GO:0040029,GO:0042221,GO:0042304,GO:0042393,GO:0042493,GO:0042594,GO:0042826,GO:0043044,GO:0043156,GO:0043157,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044111,GO:0044114,GO:0044115,GO:0044182,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044764,GO:0044877,GO:0045013,GO:0045014,GO:0045165,GO:0045814,GO:0045827,GO:0045833,GO:0045892,GO:0045893,GO:0045894,GO:0045926,GO:0045934,GO:0045935,GO:0045944,GO:0045990,GO:0046015,GO:0046677,GO:0046688,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051828,GO:0051832,GO:0051834,GO:0052173,GO:0060255,GO:0060258,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0062012,GO:0065007,GO:0070013,GO:0070784,GO:0070887,GO:0071103,GO:0071214,GO:0071236,GO:0071241,GO:0071248,GO:0071280,GO:0071310,GO:0071396,GO:0071470,GO:0071472,GO:0071473,GO:0071496,GO:0071824,GO:0071840,GO:0072364,GO:0080025,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090088,GO:0090089,GO:0090568,GO:0097305,GO:0097306,GO:0097307,GO:0097308,GO:0098609,GO:0104004,GO:0140110,GO:1900428,GO:1900429,GO:1901700,GO:1901701,GO:1901981,GO:1902679,GO:1902680,GO:1902936,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2000217,GO:2000531,GO:2000877,GO:2000879,GO:2001020,GO:2001141
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-00_001730.1
Exons2
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925369.7360053-CDS-S-dermatodea_contig8848:6318..64291622925369.7360053-CDS-S-dermatodea_contig8848:6318..6429Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8848 6319..6429 -
1694079886.944422-CDS-S-dermatodea_contig8848:6318..64291694079886.944422-CDS-S-dermatodea_contig8848:6318..6429Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8848 6319..6429 -
1622925369.7490516-CDS-S-dermatodea_contig8848:7032..72211622925369.7490516-CDS-S-dermatodea_contig8848:7032..7221Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8848 7033..7221 -
1694079886.955203-CDS-S-dermatodea_contig8848:7032..72211694079886.955203-CDS-S-dermatodea_contig8848:7032..7221Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8848 7033..7221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8848.16969.1prot_S-dermatodea_contig8848.16969.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8848 6319..7221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8848.16969.1

>prot_S-dermatodea_contig8848.16969.1 ID=prot_S-dermatodea_contig8848.16969.1|Name=mRNA_S-dermatodea_contig8848.16969.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=100bp
MACGQVWDLGPGSEGRLSPQAQTLPGGHSDYVLSVCFSQDGKYIISGSKD
RSVTIWDAKLMKRVATVTGFKNSVIGVSASPTKGTFATGSGDNLVCVWHY
back to top

mRNA from alignment at S-dermatodea_contig8848:6319..7221-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8848.16969.1 ID=mRNA_S-dermatodea_contig8848.16969.1|Name=mRNA_S-dermatodea_contig8848.16969.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=903bp|location=Sequence derived from alignment at S-dermatodea_contig8848:6319..7221- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGTGTGGGCAGGTGTGGGACCTGGGGCCCGGGTCAGAAGGCCGCCT CTCGCCGCAGGCTCAGACGCTGCCGGGGGGTCACAGCGACTACGTGCTGT CGGTGTGCTTCTCGCAGGATGGCAAGTACATAATCTCCGGGTCAAAGGAC CGCTCCGTCACGATCTGGGACGCGAAGCTCATGAAGCGGGTGAGTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTCTCCTCCCCTTTCTCCCCCCCCCC CCCCCCCCCCCAAACTTAAAAGCTGCCTTCTTACACACCACTCCCTGCTC CCTGCCCCTCCCGACTGATCGATCNNNNNNNNNNTCCGGTTCGGGGGGGG GGGGGCCACTGAGGGGGTGTGTTTTTTTTTTTTTTTTTTTTTGATTATTT CCTCCCCCCCTCCCCCCCCCCCCCCCCGGCCCCCGACCTCGACCCGACCC GACCCGGCCCGGCCCGTCCCCCCTGGGACCATCGTTGTGAAACGCATCCT GGCCGGCGGAAAACCCGGCTTACCGCTCAGTCCCGGCATCATCAGTTTGC ACCATCTACATCAGCGTATCCGCTTGGACATATACTTTACATACGACACG CGTTAACCACGAGCACGCCCCCCCCCTCCCTCCACGCCCTCTGCCTTTAT TTCCCACAACGTTTGTTCGTTTGTTCGTTCGTTCGTTCGTGCCTTCCTCG TCTCAACGACTACGCCGCTACCGCTACCGCTACCGCTACTACCGCCGCAC CCAACACCCAACGCCCCCAACACCCAACAACGACAAAAAAAGGTCGCGAC GGTGACCGGCTTCAAGAACTCGGTGATCGGCGTGTCGGCTTCCCCCACCA AGGGTACCTTCGCCACCGGCAGCGGCGACAACCTCGTCTGCGTCTGGCAC TAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8848:6319..7221-

>mRNA_S-dermatodea_contig8848.16969.1 ID=mRNA_S-dermatodea_contig8848.16969.1|Name=mRNA_S-dermatodea_contig8848.16969.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at S-dermatodea_contig8848:6319..7221- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGTGTGGGCAGGTGTGGGACCTGGGGCCCGGGTCAGAAGGCCGCCT
CTCGCCGCAGGCTCAGACGCTGCCGGGGGGTCACAGCGACTACGTGCTGT
CGGTGTGCTTCTCGCAGGATGGCAAGTACATAATCTCCGGGTCAAAGGAC
CGCTCCGTCACGATCTGGGACGCGAAGCTCATGAAGCGGATGGCGTGTGG
GCAGGTGTGGGACCTGGGGCCCGGGTCAGAAGGCCGCCTCTCGCCGCAGG
CTCAGACGCTGCCGGGGGGTCACAGCGACTACGTGCTGTCGGTGTGCTTC
TCGCAGGATGGCAAGTACATAATCTCCGGGTCAAAGGACCGCTCCGTCAC
GATCTGGGACGCGAAGCTCATGAAGCGGGTCGCGACGGTGACCGGCTTCA
AGAACTCGGTGATCGGCGTGTCGGCTTCCCCCACCAAGGGTACCTTCGCC
ACCGGCAGCGGCGACAACCTCGTCTGCGTCTGGCACTACGTCGCGACGGT
GACCGGCTTCAAGAACTCGGTGATCGGCGTGTCGGCTTCCCCCACCAAGG
GTACCTTCGCCACCGGCAGCGGCGACAACCTCGTCTGCGTCTGGCACTAC
back to top