mRNA_S-dermatodea_contig8755.16900.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8755.16900.1
Unique NamemRNA_S-dermatodea_contig8755.16900.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8755.16900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8755contigS-dermatodea_contig8755:3817..8727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925364.420012-CDS-S-dermatodea_contig8755:3816..39201622925364.420012-CDS-S-dermatodea_contig8755:3816..3920Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8755 3817..3920 +
1694079883.4362295-CDS-S-dermatodea_contig8755:3816..39201694079883.4362295-CDS-S-dermatodea_contig8755:3816..3920Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8755 3817..3920 +
1622925364.430306-CDS-S-dermatodea_contig8755:8540..87271622925364.430306-CDS-S-dermatodea_contig8755:8540..8727Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8755 8541..8727 +
1694079883.4441676-CDS-S-dermatodea_contig8755:8540..87271694079883.4441676-CDS-S-dermatodea_contig8755:8540..8727Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8755 8541..8727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8755.16900.1prot_S-dermatodea_contig8755.16900.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8755 3817..8727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8755.16900.1

>prot_S-dermatodea_contig8755.16900.1 ID=prot_S-dermatodea_contig8755.16900.1|Name=mRNA_S-dermatodea_contig8755.16900.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=97bp
MSRAGKGGRRPAGVQFVAKAMASTTLRLTRCLAHRHLNKTGGLRTTLATC
SSSTTATSKLVLPSAARRALSTRPATTTDPSEPDWDAVLSEGGGEVG
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mRNA from alignment at S-dermatodea_contig8755:3817..8727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8755.16900.1 ID=mRNA_S-dermatodea_contig8755.16900.1|Name=mRNA_S-dermatodea_contig8755.16900.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4911bp|location=Sequence derived from alignment at S-dermatodea_contig8755:3817..8727+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCCGAGCAGGCAAAGGCGGCAGGCGGCCTGCAGGCGTGCAGTTCGT
GGCTAAGGCAATGGCGTCAACAACACTCAGGCTCACGCGATGCCTGGCAC
ACAGGTGATGTGCGAGTGGGCGGCCGCTATGCCTGCTTCCTGCTAGTAGA
GCAAGCACGTCGTTGAAATGCAATTGAAACATGCGGCCCTAAACGGCGCC
CAAAACTATACTCTCTCCTCCAGTAAATAACTAATGACAGCAGCACCCAG
TGATCGGCGAGGTGCGAGAGTGCGAGTGCACGTGCTGGACGGTAATGCGG
TAGAAATAAAAGGCGCGTGCGGCACCAGGGAGTGGTATGATGATTGAACC
ACCGCTTGTGACCACTGACGGGGAGGTCGGTCGGTCGGACTTGGATTGCA
CAACACACAATAGTAGCAGGGCGCTATATATCGTGCAGAAACTATAGGAG
GCTCTAGATCTTATAGAGCTTTCGTTTCGTAGACTGCTGTACTACTGTAC
AGAGAGAAGAGAGTACAAGTGTGCTGTCTACGTGTATCTGTGTAATGCAT
CCTCTTCATCTACAAGTATCTCGTCTGTTTCTACCGCAACAGTGAATGCA
TTTAAGAAAGGACCCCCTGAGTTTAGCTGCGATTGAAAGCCGTGTTCTCG
CTAGGCGCACATGCTCGTTGTAGAAGTTTGTGGCAGCAAAGTGCAGCCGT
TTAATGATAACATATATGATATCATAGTTTCGTGGAAGCTTTCGCTGCTC
TACATATGTTTACAAGTTTGTGTTCAACCAATTTCTCCTGGCTGGAAACT
TGGTGCCTCTCTCGCCACTCGCAATAGAGCTCTGCCTTCCTTTCTCTCAC
GTATTTATTTTACCACGATATCCATGGGCTCTTGTTCTGTTTGTCATATG
CGTGGGAACTGATATCTCAAATCTCGGTGGGTTCTACAATGTACTTACTA
TTACTAGTATTGTAAAGCCAAAGTGAGGCGATGCCTCAGACAACCTAATT
TTCTTGTTGATGAGTGGCGTGAAGTACGCTTGGACAACCCGAGATGGTCT
TGGGCAAACACACTCGCGAGGACACGGGACAGCGTGCTGGTTTTGCCCTC
TATGACGGAAAATAACAACGATAATCGAAGGCATCTCCCCTGTCTTTTTC
CGCTCCATACCCATTTACCAAAGCTGCCAGATTTTTAGCTCTCGGAATTC
CATTCTGCCAAGTCGCTGTGTAGCACAGATTGAGACGGGACCTTCAGCAA
TGACCTCTCCTTGGTCCACTTGAGGGGTCCGGTGTGCGCAGAATTTTAGT
TCGCCACAACAAAAGGAAGTCGGCATCGCGGTGGCCAAGGCTGCCTGGAT
TGGTGGTTTCAAAAATGCAATGCTTACTTGTATCGTATAGTAGTGGAAAA
GTTGAGTTTGACGGACTTGAGTGGATTTTGCCAGGTCAAACGGCCAAGGG
TGGAGCGGTGGTGGCCGGCCCAGGCTGCAGAGTGAAGTCTTCGCTACCCC
CATCGGTACAGTAGTGTGCAGAATTTCAGTTCGACCTTTGACCCCTAGCT
TTCTATTAAAAGCGCGTTCGTCTCTGGTTGGTGTGCACTTAAGGGAAAAT
TCGAAGTAGTGTGCTTCCACAGCTAGATTCTTGTTTTATGGTTCCATAAT
TCGAAAAGTGTAGGAAGAAAACACAAGCCACGAGGCAAGCAGTGTCCCGC
GAAGAGGTGGTGTATGCGCGTAAGGAGGCGTCTGTACGTCACAACCTTAA
GGGAAGTCACATATAGGCAGTAGTGTAGGGGGCCTGGTATCCACGCCTTT
GCACAAAAATGCATAGTTGGTGCTTATATCATGTCATGTATTGGCACTAC
AGCGTATGTACAAGCGCGTGTATTGTACGCATGTGCCACGCTTGAGTTTG
GGGTCTCGATCCTGTTTTGCGTGTGGTGTGCCGTACCGATCTGGACCAGT
CTGGGCTGGGGGCATTGCATACACAGGTACTTTGAATTTGGATACGCTCA
AGAGGGAAAGTTAGCGCAGTTTTCGACGCTTTGAGCCCCGCCGACTCTCT
ATATTTTGTACAAGTATGCTTATTAATATATATTTTGAATGCATGCACTG
GCCTGCTGGCCGGTGATCTTCTTGCCAGGGATGTTCCGGACGAGCTTGTG
CGTACTATGACTAGTATTGTAATACATAGTAGTATTAGTAGCAGTTTGTA
TGGTACCGCAGCTGCCTCTGCTGCAGCGGCGAAGCTTTTCCCCACCTTCT
TGCCTGTGACGAACGGCCACAATTTCGCTTTCGCGAAAAAAGGGAGGATC
GTTTTTCGCGCCATCGGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCGGCCCGCCTGCCGCTCGCGAGCCGCCACGCCCGACACCGC
CACAACAACACAAACACNNNNNNNNNNCCCTCCTGCGGGGCGCCCACCAC
CATTTTTCTTTGCGTAAAAAAAAAGGGGGGGCGTTTTTTTCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCTGCATGCGTGACCTCCGCGCTGCGTTCT
TCCCGAGCAGGAAGAGTCAAGCCAAATCATACATACGTATTCAACGCTAA
TAACTTGCGGCATGTACTCGTAGCAGTGGCTTAGGATCATGGCCCCGCGC
TTATTATAGCGCTCTACTTGGACGTCTGTATGTGTGTGTGTGTGTTTGAC
AGATGGTACTCAGGCTCCCTGTCCTGAATGCTACTATGAATGCTACCTGG
TACTATGTATTGTACGCGTGAGGGTTTCTACTTTTAGGCTGAAAAAGCTA
CCGTTGTCAGTTGTTATGTACCAGTAGTCATTAGTGGAGTAAGTGTGGGT
GCGTCGGTAGAAGCACCCCCCCACCCCCCCCTGCTGCGGCCAGGTCTCGG
CCCATCCTCTTGCCTGTGACGAACAGCCACAATTTCGCTTTCACGAAAAA
AGGGGGGCGGTTTGGTTTCACGCCATCGGCGTCGTTCCCCACCCCCCCCC
CCCTGCATGCGTGACTCCACGCTGCGTTCTTTCCGAGGCAAGAAGAGCAG
AGCTACATCGTTTCGCGTCAGCAGCTGCGGTACTCGTAAAATGGCAAGTA
AATCAGTTTGTCTCTCCAGTAGCTATGGCTGCGCCCAGCTCCCGAGCATC
TGGGTGTTGCACATGGATGTAACCCGGCTTAGGTGATGTGCTGCACACGC
ACACGCGTACTCCATTTCTCCCTCCCTGCCTTGCAGCGCGCGCGCCCATG
CATATCGTGGGCGCTGGTTGCGTTTGGAATTGCGATGGCGTTGTTTACTT
CCGCGACCGGAAGGACGTATGATTTCCCCTTCATCACAAGATTGCTCTCC
TTTTTTTTGTTTGCGAGTGGGCTGTTTCTGTTTCTCTTGCACAGGTGCGA
CGGTTATTGGAGACACCGTATGCATGCCTCCTTCGCATGTGCATCGTACG
TTGTACTATATTAGACGGTAAGTAGTTACTGCTGTGTGAGAGCGGGCGGT
GGCGTTACTTGTCCTGCTGCATTGCCTTGTGGGAAGGAAGGGTGTGGCCG
GCTGTTGGCTATTTTCGGGCAACCGGGGATAAGAGAGATGGGATGATCCC
TTGTGACCACAGGCGGAAGTTCAACCACGGGGTGTACCTCGGTAATAGTA
CAAGTACCACCACAGCCGCAGCCCAGGTTGTGTACACTGAGAAAGTCAGG
TGCGGGTGCGGGAAAACGCGACCGTTGTTGAGGGTTGAGTGTTGGCTGTT
GGTTTGGAAGTGATGTTAGTCCGCCGTTATAAGTTTTTATTTACTCACCC
CTGTTGCTGCTGCGGCGAGGCTTGGCGATGCATCTTCTTGCCCTGTGACG
AATAGCCACAATTTCGCTTTCACGAAAAGAGGGAATGGGTTGGGGTTTCA
CCCCATCGGTGTCTTCCCCCCCCCCCCCCCCCCTCCCCTCCCTGCATGGG
TGACTCCACGCTGCGTTCTCTCCGAGGCAAAGGAAGCCGAACAAAACCTC
CAGCATGTACTTGCATGGTAGCAGTGGTCTAGATACAGCTAACCCCCCCG
TAATCTCTATATATTCTTGCCTGTGACGAATAGCCACAATTTCGCTTTCA
CGAAAAAAGGGAAGGGGGGGGGTGTTTTCACGCCATCGGCGTTTTACCCT
CCCCCCCCCCCCTGGATGCGTGACTCCACGCTGCGTTCTTTCCGAGGCAA
GGAGAGCCGAACATAACCTGCAGCAAGAGTTGTGCCCCTCGCCATTTCTC
TCAATCCCGCAAAAACACCCTCCCCTTTTCTCACCTACCATTCAAAAGAA
GACACAATTTTTAAACACGATAAGAAAAGGTTTTAGCCGTGGGATGTACT
TGTACAAGTATGAATTCCTTGTGGTTGGAGCAACGCGGCCCTGGCTATAT
AAACCCATACGGGGCGAGATTGAGCTATTTGCATCACATGTATACGAAGC
TAACCGTGCACATGTACCCATTGTAGAAGTAGAAGTGCCTTGGGCCGTGC
AGCACTGACAGTGACCCCTCTTCTCCCAACAAAAGTTCCTTTGCGGTATG
ATTATACTTGGAGTACAGTAACGCTTGCTGAACGTGCAACCTTTGGTCAC
TCGGCACGTCCAATCGAATAAACCAATCGACCAATTAGCGTGCCCGGTTT
TTGCGTCGCAAACTCAAGGAGTACGACCCCCCCCCCCCCCTCCACCCGCC
CTCCCCTTCCTTCTCCCGCGGCAGACATCTCAACAAAACAGGTGGGCTCC
GAACCACCCTCGCCACGTGTTCTTCTTCCACAACTGCAACTAGCAAGCTC
GTCTTACCGTCCGCGGCACGGCGAGCGTTGTCCACACGGCCCGCCACTAC
GACAGACCCCTCGGAGCCAGACTGGGATGCGGTGCTGTCTGAGGGAGGGG
GAGAGGTGGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8755:3817..8727+

>mRNA_S-dermatodea_contig8755.16900.1 ID=mRNA_S-dermatodea_contig8755.16900.1|Name=mRNA_S-dermatodea_contig8755.16900.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig8755:3817..8727+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCCGAGCAGGCAAAGGCGGCAGGCGGCCTGCAGGCGTGCAGTTCGT
GGCTAAGGCAATGGCGTCAACAACACTCAGGCTCACGCGATGCCTGGCAC
ACAGATGAGCCGAGCAGGCAAAGGCGGCAGGCGGCCTGCAGGCGTGCAGT
TCGTGGCTAAGGCAATGGCGTCAACAACACTCAGGCTCACGCGATGCCTG
GCACACAGACATCTCAACAAAACAGGTGGGCTCCGAACCACCCTCGCCAC
GTGTTCTTCTTCCACAACTGCAACTAGCAAGCTCGTCTTACCGTCCGCGG
CACGGCGAGCGTTGTCCACACGGCCCGCCACTACGACAGACCCCTCGGAG
CCAGACTGGGATGCGGTGCTGTCTGAGGGAGGGGGAGAGGTGGGAACATC
TCAACAAAACAGGTGGGCTCCGAACCACCCTCGCCACGTGTTCTTCTTCC
ACAACTGCAACTAGCAAGCTCGTCTTACCGTCCGCGGCACGGCGAGCGTT
GTCCACACGGCCCGCCACTACGACAGACCCCTCGGAGCCAGACTGGGATG
CGGTGCTGTCTGAGGGAGGGGGAGAGGTGGGA
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