mRNA_S-dermatodea_contig12766.1690.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12766.1690.1
Unique NamemRNA_S-dermatodea_contig12766.1690.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12766.1690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12766contigS-dermatodea_contig12766:3604..4207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size604
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12766.1690.1prot_S-dermatodea_contig12766.1690.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12766 3667..4011 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924260.5142496-UTR-S-dermatodea_contig12766:3603..36661622924260.5142496-UTR-S-dermatodea_contig12766:3603..3666Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12766 3604..3666 +
1694079132.4060814-UTR-S-dermatodea_contig12766:3603..36661694079132.4060814-UTR-S-dermatodea_contig12766:3603..3666Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12766 3604..3666 +
1622924260.5421681-UTR-S-dermatodea_contig12766:4011..42071622924260.5421681-UTR-S-dermatodea_contig12766:4011..4207Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12766 4012..4207 +
1694079132.422202-UTR-S-dermatodea_contig12766:4011..42071694079132.422202-UTR-S-dermatodea_contig12766:4011..4207Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12766 4012..4207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924260.5282493-CDS-S-dermatodea_contig12766:3666..40111622924260.5282493-CDS-S-dermatodea_contig12766:3666..4011Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12766 3667..4011 +
1694079132.4140553-CDS-S-dermatodea_contig12766:3666..40111694079132.4140553-CDS-S-dermatodea_contig12766:3666..4011Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12766 3667..4011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12766.1690.1

>prot_S-dermatodea_contig12766.1690.1 ID=prot_S-dermatodea_contig12766.1690.1|Name=mRNA_S-dermatodea_contig12766.1690.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=115bp
MCLCVCVVCFTLIFEAHSSANNPACESVRVLSVRVLSSRVWREPAYRTRR
DSWSDPQRAAGGSWLVAQFSMRRFRASSKQSAMTLVPSDGRGVISFDGGE
EGRGWGTEVCRCRA*
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mRNA from alignment at S-dermatodea_contig12766:3604..4207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12766.1690.1 ID=mRNA_S-dermatodea_contig12766.1690.1|Name=mRNA_S-dermatodea_contig12766.1690.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=604bp|location=Sequence derived from alignment at S-dermatodea_contig12766:3604..4207+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCCCCAGCTGTGCTGTCGTTTTCTAGTACTAGAGAGATGGATGCCTTAT
CTTGGGCATCAATATGTGTTTGTGTGTGTGTGTAGTTTGTTTTACTCTTA
TTTTTGAAGCGCACTCTAGCGCCAACAACCCAGCCTGTGAGAGCGTGCGG
GTGCTAAGCGTGCGGGTGCTAAGCTCGCGCGTCTGGCGCGAACCGGCGTA
TCGTACGCGTCGAGACAGCTGGAGTGACCCCCAGAGGGCGGCGGGGGGAA
GCTGGCTTGTCGCTCAATTTTCCATGCGGAGGTTCAGAGCATCCTCAAAA
CAGAGCGCCATGACCCTAGTCCCCTCAGACGGCCGAGGCGTTATATCGTT
CGATGGGGGGGAAGAGGGGAGAGGTTGGGGTACTGAGGTTTGCAGGTGCA
GGGCTTAGCCTTCGGGTTTAGGAGGGCGGTGGCGATGCTGGCCTGTAGGA
TGAAGTCCCTATGTGCCGTCCGTTGCTGTCAATCGCTCTGCAGGGTTAGT
TCTGAACCGAGTTGGTTTCTTCCGGGTTCGCTGTTGAGCAACAAAGTTGG
TCCTTGTGCTCGATCTGCGGCACGGTTGTTTTTGTTTTACTGGCAGGTTG
TTAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12766:3604..4207+

>mRNA_S-dermatodea_contig12766.1690.1 ID=mRNA_S-dermatodea_contig12766.1690.1|Name=mRNA_S-dermatodea_contig12766.1690.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at S-dermatodea_contig12766:3604..4207+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGTTTGTGTGTGTGTGTAGTTTGTTTTACTCTTATTTTTGAAGCGCA
CTCTAGCGCCAACAACCCAGCCTGTGAGAGCGTGCGGGTGCTAAGCGTGC
GGGTGCTAAGCTCGCGCGTCTGGCGCGAACCGGCGTATCGTACGCGTCGA
GACAGCTGGAGTGACCCCCAGAGGGCGGCGGGGGGAAGCTGGCTTGTCGC
TCAATTTTCCATGCGGAGGTTCAGAGCATCCTCAAAACAGAGCGCCATGA
CCCTAGTCCCCTCAGACGGCCGAGGCGTTATATCGTTCGATGGGGGGGAA
GAGGGGAGAGGTTGGGGTACTGAGGTTTGCAGGTGCAGGGCTTAGATGTG
TTTGTGTGTGTGTGTAGTTTGTTTTACTCTTATTTTTGAAGCGCACTCTA
GCGCCAACAACCCAGCCTGTGAGAGCGTGCGGGTGCTAAGCGTGCGGGTG
CTAAGCTCGCGCGTCTGGCGCGAACCGGCGTATCGTACGCGTCGAGACAG
CTGGAGTGACCCCCAGAGGGCGGCGGGGGGAAGCTGGCTTGTCGCTCAAT
TTTCCATGCGGAGGTTCAGAGCATCCTCAAAACAGAGCGCCATGACCCTA
GTCCCCTCAGACGGCCGAGGCGTTATATCGTTCGATGGGGGGGAAGAGGG
GAGAGGTTGGGGTACTGAGGTTTGCAGGTGCAGGGCTTAG
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