mRNA_S-dermatodea_contig8743.16890.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8743.16890.1
Unique NamemRNA_S-dermatodea_contig8743.16890.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8743.16890.1 vs. uniprot
Match: A0A6H5KWW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW8_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 3.050e-56
Identity = 104/134 (77.61%), Postives = 114/134 (85.07%), Query Frame = 2 
Query:    2 VLFGVASGFAQGALFGLTYRYVVRADR-QAPKA---DVTTAQMDGFTVGHLGDGCVAAFALTSALGQSEVPLTIAASEFVGVLSRGGGVFEALVAVLLPVVPFLPRAAADLVFYSVARAALDRALDEGVIKPFP 391
            +LFG+A+GFAQGALFGLTYRYVVR+DR Q+P A   +    QMDGFTVGHLGDGCVAAFALTSALGQSE PLT+AA EFVGVL RGGG+ EAL AVLLP  PFLPRAAADL  Y+ AR A+DRALDEGVIKPFP
Sbjct:  217 LLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVGVLGRGGGILEALAAVLLPAAPFLPRAAADLFLYTAARLAIDRALDEGVIKPFP 350
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BLAST of mRNA_S-dermatodea_contig8743.16890.1 vs. uniprot
Match: D8LP08_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP08_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 2.130e-43
Identity = 90/128 (70.31%), Postives = 99/128 (77.34%), Query Frame = 2 
Query:    2 VLFGVASGFAQGALFGLTYRYVVRADR-QAPKA---DVTTAQMDGFTVGHLGDGCVAAFALTSALGQSEVPLTIAASEFVGVLSRGGGVFEALVAVLLPVVPFLPRAAADLVFYSVARAALDRALDEG 373
            +LFG+A+GFAQGALFGLTYRYVVR+DR Q+P A   +    QMDGFTVGHLGDGCVAAFALTSALGQSE PLT+AA EFV VL RGGG+ EAL AVLLP  PFLPRAAADL  YS    A   +   G
Sbjct:  125 LLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVRVLWRGGGILEALAAVLLPAAPFLPRAAADLFLYSSPPLAPPTSSPRG 252
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BLAST of mRNA_S-dermatodea_contig8743.16890.1 vs. uniprot
Match: A0A7S3URH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URH4_HETAK)

HSP 1 Score: 63.9 bits (154), Expect = 2.150e-8
Identity = 53/145 (36.55%), Postives = 65/145 (44.83%), Query Frame = 2 
Query:    5 LFGVASGFAQGALFGLTYRYVVRADRQAPKADVTTAQMDGFTVGHLGDGCVAAFALTSALGQSEVPLTIAASEFV-----------------GVLSRGGGVFEALVAVLLPVVP---FLPRAAADLVFYSVARAALDRALDEGVI 379
            L  +  G A+GALFGL YRYVVR D   P   +      GF+V  LGDG V++FALTS L  ++  L   A  FV                 G L+  G V  AL             L  AA   + + + R ALDRAL  G I
Sbjct:   27 LVALGGGAAEGALFGLLYRYVVRGDLTRPDPGL------GFSVKQLGDGVVSSFALTSVLAHNQENLVKVAEVFVLSLPTAISDLTSVPEGGGALAAAGDVARALXXXXXXXXXXXXLLRDAAVAWLSFGLCREALDRALLSGAI 165
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BLAST of mRNA_S-dermatodea_contig8743.16890.1 vs. uniprot
Match: A0A2T1CR39_9CYAN (Uncharacterized protein n=2 Tax=Pleurocapsa sp. CCALA 161 TaxID=2107688 RepID=A0A2T1CR39_9CYAN)

HSP 1 Score: 53.9 bits (128), Expect = 5.120e-5
Identity = 42/125 (33.60%), Postives = 56/125 (44.80%), Query Frame = 2 
Query:   14 VASGFAQGALFGLTYRYVVRADRQAPKADVTTAQMDGFTVGHLGDGCVAAFALTSALGQSEVPLTIAASEFVGVLSRGGGVFEALVAVLLPVVPFLPRAAADLVFYSVARAALDRALDEGVIKPF 388
            +A G   G LFG+TYRYV+R+DR +                HL DG V AF L   L   E  L +  SE    LS GG V +++V                   +++AR  LD A+   +IKPF
Sbjct:   73 IAIGVVSGFLFGVTYRYVIRSDRNS----------------HLKDGAVLAFGLVRGLALVETNLVL--SEL---LSLGGLVLQSIVC------------------FAIARLILDLAILRKLIKPF 158
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8743.16890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KWW8_9PHAE3.050e-5677.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP08_ECTSI2.130e-4370.31Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S3URH4_HETAK2.150e-836.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2T1CR39_9CYAN5.120e-533.60Uncharacterized protein n=2 Tax=Pleurocapsa sp. CC... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8743contigS-dermatodea_contig8743:4713..8385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1377
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8743.16890.1prot_S-dermatodea_contig8743.16890.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8743 7124..7402 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925363.5932264-UTR-S-dermatodea_contig8743:4712..47721622925363.5932264-UTR-S-dermatodea_contig8743:4712..4772Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8743 4713..4772 +
1694079882.8349578-UTR-S-dermatodea_contig8743:4712..47721694079882.8349578-UTR-S-dermatodea_contig8743:4712..4772Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8743 4713..4772 +
1622925363.6068535-UTR-S-dermatodea_contig8743:7068..71231622925363.6068535-UTR-S-dermatodea_contig8743:7068..7123Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8743 7069..7123 +
1694079882.847726-UTR-S-dermatodea_contig8743:7068..71231694079882.847726-UTR-S-dermatodea_contig8743:7068..7123Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8743 7069..7123 +
1622925363.6349795-UTR-S-dermatodea_contig8743:7402..83851622925363.6349795-UTR-S-dermatodea_contig8743:7402..8385Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8743 7403..8385 +
1694079882.874243-UTR-S-dermatodea_contig8743:7402..83851694079882.874243-UTR-S-dermatodea_contig8743:7402..8385Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8743 7403..8385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925363.6220682-CDS-S-dermatodea_contig8743:7123..74021622925363.6220682-CDS-S-dermatodea_contig8743:7123..7402Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8743 7124..7402 +
1694079882.8643622-CDS-S-dermatodea_contig8743:7123..74021694079882.8643622-CDS-S-dermatodea_contig8743:7123..7402Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8743 7124..7402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8743.16890.1

>prot_S-dermatodea_contig8743.16890.1 ID=prot_S-dermatodea_contig8743.16890.1|Name=mRNA_S-dermatodea_contig8743.16890.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp
MDGFTVGHLGDGCVAAFALTSALGQSEVPLTIAASEFVGVLSRGGGVFEA
LVAVLLPVVPFLPRAAADLVFYSVARAALDRALDEGVIKPFP*
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mRNA from alignment at S-dermatodea_contig8743:4713..8385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8743.16890.1 ID=mRNA_S-dermatodea_contig8743.16890.1|Name=mRNA_S-dermatodea_contig8743.16890.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3673bp|location=Sequence derived from alignment at S-dermatodea_contig8743:4713..8385+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTGCTGTTCGGCGTGGCGTCGGGCTTCGCGCAAGGGGCCTTGTTCGGGC
TGACGTACCGGTGAGTTTGGTGTCGCTTGCTTATTTTTGTGTGGTGGCAC
GACAGCTCTATTAATACTGCGATATTTAGTCTAAACCCTGTTGGGTTGGG
ACTGAGCCTATAGTATATAGTGTATACTATGTAGTATGTACGGTAACATC
GCGGTGACGGGTGGGTGGGTGGGTGGGTGGGTGCATCCACAAACAAGTGC
AGCACCAACACCACGGATGTGTAGGAGAGCTGAGCCATGGCAGGGTTGAC
TTGTCACTTTTCCACGGCCACTATTAATAGTGTACCATATCATACGGTAG
GGCGAGGAGTACCCACCGTTCGGGGACTAATAAATCTCGATAATTACAGT
ATATACTACTGTATTACGGAGAACCTATAGGTAACGGGTCCAAATTTGCT
ATTACACAAGTCTCAACCTAGAAATAAATGTAAAAATAGGCTGGAATTAT
CGAGATTTCAAGGTCGATGTTTTCTTGTATATTATGGCCAATCTCTTTTC
TGTTTGATTTTTTCGTGAGATTTTTGTTGTTTTTTTTGTGTATTCATGGT
CGGAATAGTTGTGTATTCATGGTCAAGACATTTGGTCCCGACTACTGTAA
TGTTAAAATTACGCATTACGGGGGTACACAGACAGTTACTGTAATAACTG
TGTACCTGTTGGCCCCGAAAACAGACTCAAATGTCCCAAAAGTAACTTTT
ATTACCGAGAACGATAGTTAACAGGTCCAAATTCGTCGCAAATATCAGTA
TCACCTTTTATAAAGAAAAAAAACTTACTTGTAGGCCGGAAATGAATTGA
TTGGGTATTCATGACCGATGTTGTCATATATAAGCCAGACCTCACGATGT
GTTTTCATGAGGTAAATATTCTTGTTGTTTGGGCATTCATGGCCGGAATA
CAGCAGTTGGGTATTGTATTAGTATTCATGGTCGCGACAGTTGGTCCTGA
TTACTATTACTTGATTACTTGATTATAGTGTACCTCCCTAATAGGCGACG
TTCGTCCAATCAATGCATGATGTGTGTTGCAGGCACAGCTGACTGACTGC
GCGGTTGGTTAACCCTTTTCGGACTAAGGCTGTTTTCGGGTAACTGTTTG
CTGTTATTATATACCCTTCTGTTTTGGGACTAAGGNNNNNNNNNNAACAT
TAGTACAAAAACAAAAGTGTATATAATAATAGCTAACAGTTACCCGAAAA
CAGCTTTAGTCCCAAAAGGGTTAAGACGTTTCTTTAGATCCCCCCCAGTT
TTCTCCTTTGTTTCGTTTAGACAGGAAGTACGCGACGGCTATTGTATTCG
GTATCATAGGTATTCGGTAGTGCTTCTTTCTTGACACCCTCTTTACTGAA
ACGATGCCAGTGTGTATTGTGCAGTATATAACGCCCCTTAAGTACGTACG
AGAGTGCTGTTGTGTTGCTGTGCACGCACCCGCGCGGGCGCAGCCGGCAG
CGTGGAGATTCATGATCGCACGGCAAAAATCTCGAGCTGCGTTCAAAAGC
TGCATTTGGTGTTGTCGTCGATTTATGCGATGAGCCATACTTGCGTATTG
CTGTAGAGCAGCTCTGCTACATACACGACACGTACCGTAGGAAAGGATTT
CGAACTCATCTGCGAAGGATATGACGACAGGGAGACTTGATGGCGCGCTA
TTTGCCATAGCATAAGATGGACGTGAAACACGACACACCGACTGGATCAA
ACGAGAGCCACTAGGACTATATTTTAGCTTATTTTCTTTCTTAACACCAA
CAACGCTTGAAAACAAACGCGACACTATTAATAGTGGGCGTCAGGAAGAG
TTACCTACAATTGAAATAGAACGTGAAAATCCTGAAAAACTAAAATCACC
CATTTTCCAAGTCAAAACCCTACTGTCTGTAGAGAGATTTATGTTTCTAT
TATAGTGCTCATTATTCCGCATAGGCTACTATTACGGAGGTACACTATAA
TCAAGTAATCGGGACCAAATGTCTTGACCATGAATACCCAACTATTCCGA
TGGTGAGTACACAAACAACTAAAATGTAACGGGGGGGGGGGGTACGAGAT
ACGGTCATACACAAGAACACCGACCTCGAAATCTCGACCATTCCAGCCTA
TTTTGATTTTTCTAGGTTGAGATTTGTGGCAAATTTCGACCTGTTAACTA
CGGTCCCCCGTGATACTAATACTTACAGCACAGAGCAGCAGCAGCAGCAG
CAGCGCAAGCACCAGCACCAGCACGATGAGCACGCCTCCCCCCCCCCCCC
TTCCCTCGCCAGAACTAACAACAGTTCACACTCCCCCTCCCTCTTCTCGA
CCGCAGATACGTGGTGCGCGCCGATCGCCAAGCGCCGAAGGCCGACGTTA
CGACCGCGCAAATGGATGGCTTCACCGTCGGGCACCTGGGAGACGGTTGC
GTCGCCGCTTTCGCCCTCACGTCCGCGCTTGGCCAGAGCGAGGTTCCCTT
GACGATCGCGGCTTCCGAATTCGTGGGCGTTTTGAGCCGGGGCGGAGGCG
TTTTTGAAGCGCTGGTCGCGGTTTTGTTGCCCGTCGTGCCGTTCTTGCCG
CGGGCCGCGGCGGATCTGGTTTTCTATTCGGTCGCCAGAGCGGCGTTAGA
TCGGGCGCTCGATGAGGGGGTGATCAAGCCGTTTCCTTGATGATTTGTTT
TTCTTTTTTGTGTTTTGGCGACGGCGTCCTCTCCCGCGCGATGTGACTAC
TGTATCATACAAGTATGATACTTGTAATATTGTACTGTTTTTTGTTTTTA
CGTTGGCAACGTTTTTTGTTGACTTCTCCCTATATACAGTACTTGTATGT
ATGTATCCCTTGCTTTTTGTCGGTAGTCCCCCTGTTTGTTTTGGCGTGCA
AGAAAATGTGCCCGCGGGAGTGAGGGGGGCGCCTGAACTATTGTACCAAT
CCCATTGGAGTCCGATCGGACCATCATAATCCGATCGGACTCTCTGACCG
GACTCTGAGTCTGATTGGAGTCCGATTCGGACTCTGATCGGACTAACCCA
AATCACACACTAAATCGTATATAGATTTGATTGAATTTTGTTGCTGACGT
TACAAGAGGGGACCTGATTTACCAGTGCGTATACAGTGAAGATTTTCCGA
GAAACTTACGACAACCCAGCTAATCTTTCTAAAATTGTGTTTTGAAAGCG
TTGGCACGGAGCCCCGTTCGTCGACCCAGCCCGCCCTAGCCCTAGCCCTA
GCCCTAACCCTAGCCCTAACCCATACCTCCCTCAGAACCTTCATCCGAGG
CCTGTAGCGCCCAAACGCGGCTGCGCCACGTTTGAGCCAAAATCGATGTT
CTACTAAGGATATTTTCTTTCGGGCGGACGTGAAATTATTATCTATCTCA
GTTTTGTGTACAACAAAGTCCACCCGGGTCATGTCCTGTCCCGAAGATTT
ATGGATTGTACCACAGATGGACCTCGGAAAAGAAAGTCTGTCATACCGTA
TGTGTGCCAAAAATAAAAAAATAAAAATCACACACTTTCTGTGTTCTGTT
TCTTTATAAAAATTTCCTCAAATTTCCTATCCGATTAGAGTCCGCTCCGA
GTCCGGTCGGGGTGGTACAATAGTTCGTGGCCTTAGGGTGAGGGCGGGGG
CATCTGGTGGAGGCACGTAGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8743:4713..8385+

>mRNA_S-dermatodea_contig8743.16890.1 ID=mRNA_S-dermatodea_contig8743.16890.1|Name=mRNA_S-dermatodea_contig8743.16890.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig8743:4713..8385+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATGGCTTCACCGTCGGGCACCTGGGAGACGGTTGCGTCGCCGCTTT
CGCCCTCACGTCCGCGCTTGGCCAGAGCGAGGTTCCCTTGACGATCGCGG
CTTCCGAATTCGTGGGCGTTTTGAGCCGGGGCGGAGGCGTTTTTGAAGCG
CTGGTCGCGGTTTTGTTGCCCGTCGTGCCGTTCTTGCCGCGGGCCGCGGC
GGATCTGGTTTTCTATTCGGTCGCCAGAGCGGCGTTAGATCGGGCGCTCG
ATGAGGGGGTGATCAAGCCGTTTCCTTGAATGGATGGCTTCACCGTCGGG
CACCTGGGAGACGGTTGCGTCGCCGCTTTCGCCCTCACGTCCGCGCTTGG
CCAGAGCGAGGTTCCCTTGACGATCGCGGCTTCCGAATTCGTGGGCGTTT
TGAGCCGGGGCGGAGGCGTTTTTGAAGCGCTGGTCGCGGTTTTGTTGCCC
GTCGTGCCGTTCTTGCCGCGGGCCGCGGCGGATCTGGTTTTCTATTCGGT
CGCCAGAGCGGCGTTAGATCGGGCGCTCGATGAGGGGGTGATCAAGCCGT
TTCCTTGA
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