mRNA_S-dermatodea_contig8740.16885.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8740.16885.1
Unique NamemRNA_S-dermatodea_contig8740.16885.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8740.16885.1 vs. uniprot
Match: D7G3I4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I4_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 4.290e-60
Identity = 113/156 (72.44%), Postives = 127/156 (81.41%), Query Frame = 3 
Query:  228 YTSFSSPTPTSLRALDLKKIHLDEALNVTSHRRGNVKDIASGFRGESRPENVEVFQKRHAQQEAAYRHTVHEGKETLKKTSQGTDAMYNFVLKLNLATTEGKERFMRRWAVGRIANGESTTPREGWKFLQSLGIDVESKKPRQAPLSSATTNPVSP 695
            Y+ FSS +   +RA DLKK HLDEA N+TS+R   VKDIASGF+GESRPENVEVF KRH +QEA YRH VH+GKETLKKTSQGTDAMYNFVLKLNLATTEGKERFM++WA+GRIANGES  PREGWKFL+SLGIDV   KPR    ++    P SP
Sbjct:  185 YSVFSSTS--DVRARDLKKTHLDEARNLTSNRARKVKDIASGFKGESRPENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGKERFMKKWAIGRIANGESINPREGWKFLKSLGIDVP--KPRSPNAATDFARPGSP 336
[Close]
BLAST of mRNA_S-dermatodea_contig8740.16885.1 vs. uniprot
Match: A0A6H5KR12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR12_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 3.400e-54
Identity = 113/189 (59.79%), Postives = 128/189 (67.72%), Query Frame = 3 
Query:  228 YTSFSSPTPTSLRALDLKKIHLDEALNVTSHRRGNVKDIASGFRGESR---------------------------------PENVEVFQKRHAQQEAAYRHTVHEGKETLKKTSQGTDAMYNFVLKLNLATTEGKERFMRRWAVGRIANGESTTPREGWKFLQSLGIDVESKKPRQAPLSSATTNPVSP 695
            Y+ FSS +   +RA DLKK HLDEA N+TS+R   VKDIASGF+GESR                                 PENVEVF KRH +QEA YRH VH+GKETLKKTSQGTDAMYNFVLKLNLATTEGKERFM++WA+GRIANGES  PREGWKFL+SLGIDV   KPR    ++   +P SP
Sbjct:  226 YSVFSSNS--DVRARDLKKTHLDEARNLTSNRARKVKDIASGFKGESRQATAVNTSTAGCHTSEPRTPVPDPGRNQLLFSEPENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGKERFMKKWAIGRIANGESINPREGWKFLKSLGIDVP--KPRSPNAAADFASPGSP 410
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8740.16885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3I4_ECTSI4.290e-6072.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR12_9PHAE3.400e-5459.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8740contigS-dermatodea_contig8740:280..7830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_004720.1
Exons8
Model size748
Cds size726
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925363.1647773-CDS-S-dermatodea_contig8740:279..3811622925363.1647773-CDS-S-dermatodea_contig8740:279..381Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8740 280..381 -
1694079882.502321-CDS-S-dermatodea_contig8740:279..3811694079882.502321-CDS-S-dermatodea_contig8740:279..381Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8740 280..381 -
1622925363.1831-CDS-S-dermatodea_contig8740:1059..12301622925363.1831-CDS-S-dermatodea_contig8740:1059..1230Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8740 1060..1230 -
1694079882.513063-CDS-S-dermatodea_contig8740:1059..12301694079882.513063-CDS-S-dermatodea_contig8740:1059..1230Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8740 1060..1230 -
1622925363.1963325-CDS-S-dermatodea_contig8740:2008..21111622925363.1963325-CDS-S-dermatodea_contig8740:2008..2111Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8740 2009..2111 -
1694079882.523765-CDS-S-dermatodea_contig8740:2008..21111694079882.523765-CDS-S-dermatodea_contig8740:2008..2111Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8740 2009..2111 -
1622925363.2128575-CDS-S-dermatodea_contig8740:3955..40411622925363.2128575-CDS-S-dermatodea_contig8740:3955..4041Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8740 3956..4041 -
1694079882.5422573-CDS-S-dermatodea_contig8740:3955..40411694079882.5422573-CDS-S-dermatodea_contig8740:3955..4041Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8740 3956..4041 -
1622925363.224874-CDS-S-dermatodea_contig8740:5466..55411622925363.224874-CDS-S-dermatodea_contig8740:5466..5541Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8740 5467..5541 -
1694079882.5549667-CDS-S-dermatodea_contig8740:5466..55411694079882.5549667-CDS-S-dermatodea_contig8740:5466..5541Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8740 5467..5541 -
1622925363.2367494-CDS-S-dermatodea_contig8740:6787..68501622925363.2367494-CDS-S-dermatodea_contig8740:6787..6850Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8740 6788..6850 -
1694079882.565506-CDS-S-dermatodea_contig8740:6787..68501694079882.565506-CDS-S-dermatodea_contig8740:6787..6850Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8740 6788..6850 -
1622925363.2493773-CDS-S-dermatodea_contig8740:7282..73311622925363.2493773-CDS-S-dermatodea_contig8740:7282..7331Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8740 7283..7331 -
1694079882.582846-CDS-S-dermatodea_contig8740:7282..73311694079882.582846-CDS-S-dermatodea_contig8740:7282..7331Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8740 7283..7331 -
1622925363.2603161-CDS-S-dermatodea_contig8740:7733..78101622925363.2603161-CDS-S-dermatodea_contig8740:7733..7810Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8740 7734..7810 -
1694079882.5935316-CDS-S-dermatodea_contig8740:7733..78101694079882.5935316-CDS-S-dermatodea_contig8740:7733..7810Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8740 7734..7810 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925363.270952-UTR-S-dermatodea_contig8740:7810..78301622925363.270952-UTR-S-dermatodea_contig8740:7810..7830Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8740 7811..7830 -
1694079882.6076806-UTR-S-dermatodea_contig8740:7810..78301694079882.6076806-UTR-S-dermatodea_contig8740:7810..7830Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8740 7811..7830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8740.16885.1prot_S-dermatodea_contig8740.16885.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8740 280..7810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8740.16885.1

>prot_S-dermatodea_contig8740.16885.1 ID=prot_S-dermatodea_contig8740.16885.1|Name=mRNA_S-dermatodea_contig8740.16885.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=242bp
MHKRSSSRGGAFGGLVSASTNGGVSRLSSGQLETMPQAQDLAAGQEANDA
SSFFPTAAQVPPEPATPVRYTSFSSPTPTSLRALDLKKIHLDEALNVTSH
RRGNVKDIASGFRGESRPENVEVFQKRHAQQEAAYRHTVHEGKETLKKTS
QGTDAMYNFVLKLNLATTEGKERFMRRWAVGRIANGESTTPREGWKFLQS
LGIDVESKKPRQAPLSSATTNPVSPESAAETAPARGRGRTKE
back to top

mRNA from alignment at S-dermatodea_contig8740:280..7830-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8740.16885.1 ID=mRNA_S-dermatodea_contig8740.16885.1|Name=mRNA_S-dermatodea_contig8740.16885.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7551bp|location=Sequence derived from alignment at S-dermatodea_contig8740:280..7830- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTCTCTGGGCGGCGCCGGCATGCACAAGAGGTCGTCCAGCAGGGGAGGG
GCCTTTGGCGGCCTCGTGAGCGCCAGCACCAATGGCGGAGTCTCCAGGTG
AAGAATTCGGCGTTTGATTTTTTTGCGGCCCTCTTTTTTTTACGGCGGCG
CTGGATGGCGACATGGAGTTAGGTATTTGGTGCTTGGAATACATCCGATG
CTTTCTAATGAGGCAAGAGTTTGAAGTGTCAGCCGCGCGTAGATGATGTT
CCCGGAATCTCTCTTGCTTGCGGAGCCAAGCTAAACGTCTCTTCCGAACA
GCAGTGCGCATTGCCAAGATATACTGTGCAACATGCGCATGTATTGTACC
CGCGCGTGGTCTGTCCTTGTGTTCGAATTTTTCGGCTTCCATATCGTGCA
GATCGCACGTGCGTGTAACGGCAGTGGGAGGCGCTGCCTGGTCGCTAACA
AACCGCCACGTTTTTTCGTAATGTGCTCGTAACGGGTCGCAATTGCCAGG
TTGTCGAGCGGACAGCTGGAGACGATGCCCCAAGCACAGGATCTAGCGGT
GGGTTGCTCGTTCCGCGGAGGCAGTGTTAATAATTTCGTTTTTATGTCGG
TTGGTCCCCTACATAGGCCGCTGCTTCCGAAGGCAGGAATCGTCTGAGTC
TTTGCGTTCTCACTCTCCGACACGCAGCCTCAATCATGACTCGTCGCGCG
CGTCGTGTGCTGTCAATCGCGAACCTTGCTGTGTTTTGGCCCTTTCCACG
TTTTGGGTCTCTGTCCAAGAACATGTTCTCCCCCCCCCCCCGGATTAGTT
CTCGGTCCGTGTGAAACATGGGAGCAGCAATTATCGTTATTCACGGCGAT
GTAAACCTGCTCCCTACCCTTTTTGTGGACTGTTTACCTTCCGACGCAAA
GGACGAAGATGATGAAAGAGAACGCGCGCGCGTGACTGACGTCGTTTTTT
TTAATGTTTTTTTTTCCTTCTGTGGCGCAGGCGGGACAGGAGGCGAACGA
TGCGTCTTCCTTCTTCCCCACGGCTGCACAGGTCCCCCCCGAGGTAAATA
TGATCTTGTTGAACTAATACTAATATTAATACACCAACGTCCTCGTAAGG
CGGAGGACCCGGGTTCGAATCCTGGCAGAGTCGATATGTCTTTAGTGTCT
ACCTCCGCCGCGGAAAGCGAGAGAGGGCGAGTAAGAAAAATCCGAAAAAT
CGGCAAGCTGTGGAAGTGCCAAACGCAATGCAATCGCGATGAAAGCCTAA
CATATGAACATACCGGGGATAAGATAAGAGATGGGAGGATCCCTTGTGAC
CACAGGAGGACCCCGGGAAATTCGGTGTATATCTTATGATATCTGTGCAA
AATTACGTAAATAAAAACATGTGCAGATGCACGCGCGACTGGCCCAGTTG
AAGGCTCGGGTTTCTTGTTTTTGCCCCCATGTTTTGGAAGAACTGATAGC
AATGCGCTAAATTTTCTGGCCCTTTCGGGCGTCTGTCGGAAAAAAAACGC
GTTGATGCTGTTCGTGTTTGAAGCACACAGTATGTTTCATGGAACACCGG
GGATGTTCTCCGGATGTACCCGAAGGAAGCGGAGGCAGCAGTGTTTGCCA
GGAGCCCCCCTGCTGTCCGCCGATAACACCACGTTTGCACACGCGCACGT
GCTGTTGTGAGGTAGTGACACTCACTATAATACATTGAAGGCTCAAGCGG
GGTGTGGCTTTGGCGCAGAAATTGAAGTAGCTCTCGGTGGAGAGGTTCAT
ACCTAAGATTATGTTTAGTTTCGCCGATCATTGATTGGTTGATCCTACGT
CTGCGTCATGGCCTCGCCAAGTGTGGAAAACGCATCCTGTTCGGCCAGGC
TTGATTCCTTTCGAGTATCCCAACAATACCACTCTGTAGCAATACCTAAA
TGCCATTTTTATACACAAACAGAACACAGAAAGTGCACCTGTACAATCCA
TAACTCATACAAGTAGAGCTCTATGCTATTAATGGTATTAATGTAATAGT
ACTTCTTCTTCTCAGCAGGGTATATTATTACCCTAATAGTACTGTCTAGT
TTGCCGTGTTTTGCTTTCTTTCATGCCCCCACAAGAGCTTGGCGGATACT
AATGCCCTCGACCGCTTTTCTTGACCATCCCTGGACGCACTCCGCTTCCG
GCCATGCCTGTGCCCGTATACCATGGGACCAAGATAGCGTACCATCCCAG
ATCGTGTCCCGTGACCCACTGTCCCATATCACTTACTTCTTCCTAAACCA
TCACGGCCGTTATCTCCATTGCCTGTCGCTGTCGGACAGCCCGCCACGCC
GGTGAGGTACACATCGTTCTCCAGCCCGACCCCGACATCCTTGAGGGCGC
TCGACCTCAAAAAGGTACACACCCGTTTGCGCGTATTTCTTGCGTGACAT
ATATGTATATACTATATACAGCAACGACATAAGTTGGAGGTTGTTGGGTA
GATTTTTTGCTGAACGTCTTTGGGTTGGAATAATAATTTGGCAGAAACGT
CAAACGCAGCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTGGTTGTT
TTTTTTTTTTTTATATATATTGTTATTGTTTGATTGTATGCTTGTTTGAT
TGCTTGATACGTTTTTTTTTAATTAGTTGATGGGTTGATTTATTTATTNN
NNNNNNNNTCTTTTTTTCTGTACTTATATAATTTTTATATTTTTTAAAAA
ATTTATTTGTTAGGGTTTTTTGGTTGTTTTTTTTTTTTTGTTGAAGTGTC
AATGGGAGTGTTTTTTTTTTTTTTTTTTTTTGCAGCGGGTCGCTTGCTCG
GTCCCCTACGCCCAAGCTCTGCTGCTGTGCTGCGGGTAGGCAGGCGGCTG
TGTTTCTGGCCATTCCTCTTTGCCAAAGAGATCGGTGCTTTCTGATCCAA
GTGTCTGATAGCTTTTGCCCGGTTTGTGCTGAGTTGCGCGCTTCAAATTG
CGCCTCGTTTCGCTTTAAAGGATGACGGTGTTGCAGCGGTGTTGCTGCTG
TAGTCCCCTGCTCGAGCGTGTGTTTCAACGCTGGCCCAATTTGCGCCGCT
TGGTTTTGCGAGTTCGACTGACTTTTCAGGCCGGAAGGTCGCAGACGTTG
TACTAATATCAATATGATAAGTCCAGACCATATTAATTTCTGATTTAGTA
TGATATGTTGGGAACATTTTTTGGCACCTTTTGTCCCGGGTACGAAGGAA
GGATTGTTGTGAGTCGCGCGTGATTGTGCCGGACTACAGTAGTGGTTAGC
AACGGCTACACCCGTGAGGTGTGCGTTGGTAAGACGTGGTGGTTGTGCCG
GTAATGAACAAACATCAGAAAACAAAAACAAGTGACCGACAGCTTCGCAA
CAAAAATCCCACGCAACTAGTCCAATTAAAAACCTCGAGGGCCTACATAG
TCTATATCCCCATTTTACGAAACAAAAGGTACCAGGTGCACAGTACCCGG
GACAAAAGGTGCCAAAAAATGTTCCCAACATATCATACTACAGTAAATCA
GAAATTGATATGGTCTGGACTTATCATATTGATATTAGTACAACGTCTAC
GACCTTCCGGCCTGAAAAGTCAGTCGAACAAAATATATATATCGAAGGTG
TTCGGGCTAACGTTTTAAAATACAAAAAACAAGACCTGACTACGCTATTC
AGCACAAATCTGGTCCTGATAAGTATAATGTTGTAGCTGATTGCTTACTC
TTGTGTACTGTACTGTACCTCCGTTATGGTTCACATAAATGCTACCGCGC
TGGCTAATTCGCTCCTTCACAATTTCTTACACGACGCAGATCCACCTTGA
CGAGGCCTTGAACGTCACGAGCCACCGCAGAGGGAACGTGAAGGACATCG
CCAGCGGCTTTCGGGGCGAGAGCAGGCGAGCACCCAGTCTCGAACCTCTG
CTGCTGCTGCCATGCGCCATTTAAGGCCGATTCTATCTATCGATAGGTTT
ATAATAACAAAACTCGGCAGAGCAAGGTCGCTGGTGTTCCGATCTCCGCT
GTTTCGCGACCACAAATTGGTTTTGTATAGATTGTATTGCGTTCCGTTTC
GCTTCGTAAAATGAAGACAACATTCCAACATCAGTGTTCATTCCATGAAA
CGTGAGGTTGTGTAAACGTATATAAAAAAAACAGTTTCGTGATTTTTCGT
TTTCGTGTGAGAACGAGCTTCGAAAAGCACTTGGGGTCGTCTCTATCGGG
GCTGATTTTCTCACGCCAAATGGACACCTCACGAAACGTTACATTTTCAA
ACACGCCTTTTTACAACACCTAGCGTTTCGTGAATTGACCCCTCGCGCTA
TTCTTCGTGAGTGTTCAATTTACGAAACGTCAGCTGACGTGTGTGTGTGT
GTTTTTTTTTTTTTCGCCGCGAAACAGCGATCACGAAAGCGGCGCGCTGG
CTCTCTCACGTTTCGTGAAGAAAAAGGCGCTCGACAGAAACGGCCTTTAG
CCCCGCTCGGCATTTCGCTCCGTGCTGTGTACCCTTGCCGCACGTTCTGT
GCTTGTTCGTGAACGGTTTGAATTGGTTGCAGGGGGTGCTAATATTCGGG
GTTTGGTTTTAGAGCAGCTCGAGGCGTAAGACGAGCGGGAAGGCGCTTGC
CTAGGGCAACGTACGCAAAGCGCTTTCGATCCCCTCCTCGTACGCATGGA
TGTATATATATGCCCGGGCTGACTTGCCCAACACCTAAGGTGTGCAGAGC
ATAATTTCCTGTCTCCTCCCATGTACGATACTAGAGTGTTGATATTGTGT
TCGCCAAAACCGAAACATGACTGAATGGTACAGTTGTTAAAGTGTTACAG
TTGAGTTGTCGCAGCAGCAGTGGATAGCGGGAGTGCTTCGGTTCGCTGCT
TGGCGTGGTGTGTTTGATTGTCAACATCGAGTCCACGACTCCGTACAAGT
TGCACCTACCGTTATATTCACGGTCCCATGGCCAACCTCTACCCTGGATA
TGCCGTGCGTGTCGATGTCGTTGGGGTTAACGATACACGTTCATTTCCTC
CGTACGTTGAGGGTTTCACGTGTATCTGTAGTGGGATCGTGGCAAGCGCC
CTGTCTTATGCCATACCTTACGGATTCAAACATATTCAAAGATGGAGAGG
GAGGGTGGGATATGTCCTTTCTGGGCTTTCCGTCCCACGTCCTATTCCAT
CCCATCTGGTGTTGGGTCATTACCATGCCGGGGATGAATCCTTCTGAGCT
GCTCGTCCCGTTTCTTAATGGGTGAATTTATTATCATGTTATTTTCGAGG
TGGTGTTGTTATTGCGCCCGTTTTCTCCGTTATTCTTCTTTTCGAGCGTT
CTGGTTAGTTCCCCTTTATTTCTATGATCTCGTGGCCACCGCTGGACTTT
GGACTTTGATGTAGACCAGCTGATGATGTGAGACCACCGGCACGTTGCTC
CCCCGGCTGGACACTATCTCCGTTAATGTATACATACGACTTTGCACGTT
TTTGTTATATTGATTTAGAGTTCACATTCGTGCGGAATTCCTTTTACAAT
TCGTGATGCTCGAAATCTTAGCGATTTAGAGGGGTCCCTTACGACATCGT
ATTTTGTGCCCACGCACACCTCACCGGCGTAGCCGTGGCTATCCAGTATT
ACAGCAAATATGTTTATTTGATAACAACAATTTCATCGTCCACATCTACA
TCCTCAGAGCTAGGTCTAACATGACCCTGCTCTGGTGAACGATCGCTGGC
GACGATGTTTGCGTTGCAGGCCGGAGAACGTCGAGGTTTTCCAGAAGAGG
CACGCGCAGCAGGAGGCCGCCTACCGCCACACGGTTCACGAGGGAAAGGA
GACGCTCAAGAAAACTTCGCAGGTGCGGGGCCCGGAGCTGGAGCTGCAAG
CGCAACCCCGAATAGCAGCGCGTTGACTTTGACAGCAGCATTTTCGCGTT
CTGGTATTGTTTGTTTGCTTGGAACTCGCAGCAGACAGTACGGGCCATAA
AGCTGTCATGCAGGTGTTCCTGAGGCATATATGTGGTATACAGTTGTTGC
AGGCTTAGTTTATTAACACGTTAGTTTAGTAGTCCCCAAAATTCACTCTG
ACAAGACACTCATCAGGCTGCCAGACTCGAGGGAAAATTTTCAATTGCCG
TTGGCCACCTAATCGCTGCTCTTAGTGCTTTGTCCTTCTACCGTAAATTA
TTGATTGTGAGTTGTCGAACTGGGCGGCAGGAGCCGCGCTTTTGGTGTAC
TACTCCGTGTGTTTCGCTCAATCTCAATCGAGCGACGCCTTGGTGTTAGC
GAATGAGGGAAGTTTAGTTTGATTTGAGGTTGGATGCGTTTGCTTTTCGT
TTCAGCGCGGGCCCATTTATTTTGTTCGTCGATTTTCTTTGTTCGTTTGT
TTTATTGATTTGAACGATTGAGTAGTTGTTGCGAATAAAACTGATTGGTT
GGCCTGCAATGCTGTTGACTCGTGGTGATACCGATTTTTAAAAAACGCGA
AGGATCAAAATGGCAATAATTACGCACGCACACACACACACACACACGCT
TTTCTCCGGCCTGTCGCCACGCGGGCCGCTGACGACTCATGGATACCTCA
CCCCACCTCCAACTCCTCTTGCGGTACCCGCGTGTTTTTTCTCGCGGCAG
GGAACCGACGCGATGTACAACTTTGTGCTGAAGTTGAATCTCGCCACCAC
CGAAGGCAAAGAGCGCTTCATGCGGAGGTGGGCGGTGGGGAGGATAGCCA
ACGGAGAGTCCACGACGCCACGCGAGGGCTGGAAGTTTCTGCAGAGCCTC
GGTATCGACGTCGAGAGCAAGGTGAGGTTGTTGTTGCGGTGCTACAGCTC
TGTGTTGTCGTGTAGAGATGGGCTATCATATGTTTATGAACAAGCGGCAA
AAAAAAAAGCGCGCCCGTCCATGTTCCACATCCCCTATCCATTGCTTACC
GGCATTGAGGTGTGTACAAACATGTAGGCTTGCGCGTTATGGGGTATTGT
GCTGTAGGGAGGGGCAGACAGATGTGAAGGCGCTTACTTGTACGGCGTGG
CCGCGCGGAAAGGTAGCTGTGCCTGTGTGCTGTGCCCCCAGTCCCACACA
CAAACACTTGCATAGACACAACTTCGAGCCGGTGGAGACTCAGCGAGGTG
GCGAGCGGCCCCCGCAGCAAACGTGCGGATTGCGACCCGTTGATAATATG
TTTATTTACACAAAACAACCCTGAGTACTGCTGTAGCAATATTAACACTG
CTGGATACACGTACCTCCGTAACACTATAAATAATACAGATTTTTTATGA
CAGTGAGCGCTTTGACATGCAGAACACTTGAAACATTTTTTTTTCTTTTT
GCGCCGACCAGGCTGCGTTTCACAAGAATGTACCTGGTATACAAGTATTA
GTAGGATACAGGACACAACCGGCCGATGGCATCCATGTCACTGCTCTTAG
CCCCCCCCCCCCCCCCATTTTTTCATGCACGCCTCGCCTCGCCCCTCAGA
AACCCCGCCAGGCGCCGCTCTCCTCCGCCACAACAAACCCCGTCTCTCCT
GAAAGCGCCGCGGAAACCGCTCCCGCGCGTGGGAGGGGACGCACCAAGGA
G
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8740:280..7830-

>mRNA_S-dermatodea_contig8740.16885.1 ID=mRNA_S-dermatodea_contig8740.16885.1|Name=mRNA_S-dermatodea_contig8740.16885.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1452bp|location=Sequence derived from alignment at S-dermatodea_contig8740:280..7830- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCACAAGAGGTCGTCCAGCAGGGGAGGGGCCTTTGGCGGCCTCGTGAG
CGCCAGCACCAATGGCGGAGTCTCCAGATGCACAAGAGGTCGTCCAGCAG
GGGAGGGGCCTTTGGCGGCCTCGTGAGCGCCAGCACCAATGGCGGAGTCT
CCAGGTTGTCGAGCGGACAGCTGGAGACGATGCCCCAAGCACAGGATCTA
GCGGTTGTCGAGCGGACAGCTGGAGACGATGCCCCAAGCACAGGATCTAG
CGGCGGGACAGGAGGCGAACGATGCGTCTTCCTTCTTCCCCACGGCTGCA
CAGGTCCCCCCCGAGGCGGGACAGGAGGCGAACGATGCGTCTTCCTTCTT
CCCCACGGCTGCACAGGTCCCCCCCGAGCCCGCCACGCCGGTGAGGTACA
CATCGTTCTCCAGCCCGACCCCGACATCCTTGAGGGCGCTCGACCTCAAA
AAGCCCGCCACGCCGGTGAGGTACACATCGTTCTCCAGCCCGACCCCGAC
ATCCTTGAGGGCGCTCGACCTCAAAAAGATCCACCTTGACGAGGCCTTGA
ACGTCACGAGCCACCGCAGAGGGAACGTGAAGGACATCGCCAGCGGCTTT
CGGGGCGAGAGCAGATCCACCTTGACGAGGCCTTGAACGTCACGAGCCAC
CGCAGAGGGAACGTGAAGGACATCGCCAGCGGCTTTCGGGGCGAGAGCAG
GCCGGAGAACGTCGAGGTTTTCCAGAAGAGGCACGCGCAGCAGGAGGCCG
CCTACCGCCACACGGTTCACGAGGGAAAGGAGACGCTCAAGAAAACTTCG
CAGGCCGGAGAACGTCGAGGTTTTCCAGAAGAGGCACGCGCAGCAGGAGG
CCGCCTACCGCCACACGGTTCACGAGGGAAAGGAGACGCTCAAGAAAACT
TCGCAGGGAACCGACGCGATGTACAACTTTGTGCTGAAGTTGAATCTCGC
CACCACCGAAGGCAAAGAGCGCTTCATGCGGAGGTGGGCGGTGGGGAGGA
TAGCCAACGGAGAGTCCACGACGCCACGCGAGGGCTGGAAGTTTCTGCAG
AGCCTCGGTATCGACGTCGAGAGCAAGGGAACCGACGCGATGTACAACTT
TGTGCTGAAGTTGAATCTCGCCACCACCGAAGGCAAAGAGCGCTTCATGC
GGAGGTGGGCGGTGGGGAGGATAGCCAACGGAGAGTCCACGACGCCACGC
GAGGGCTGGAAGTTTCTGCAGAGCCTCGGTATCGACGTCGAGAGCAAGAA
ACCCCGCCAGGCGCCGCTCTCCTCCGCCACAACAAACCCCGTCTCTCCTG
AAAGCGCCGCGGAAACCGCTCCCGCGCGTGGGAGGGGACGCACCAAGGAG
AAACCCCGCCAGGCGCCGCTCTCCTCCGCCACAACAAACCCCGTCTCTCC
TGAAAGCGCCGCGGAAACCGCTCCCGCGCGTGGGAGGGGACGCACCAAGG
AG
back to top