mRNA_S-dermatodea_contig87007.16839.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87007.16839.1
Unique NamemRNA_S-dermatodea_contig87007.16839.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: Q8QN66_ESV1K (EsV-1-224 n=2 Tax=root TaxID=1 RepID=Q8QN66_ESV1K)

HSP 1 Score: 147 bits (370), Expect = 9.250e-41
Identity = 73/125 (58.40%), Postives = 99/125 (79.20%), Query Frame = 1
Query:   22 VPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPFTKCLSVTDAT--AVKLVVLDEADSLTNLSQCALRHL 390
            V W E++RP+RL DV GN HVI AL+S++S++  P+++LHGPPGSGKTS+I+++A+ F+G T +S M LELNA D R + TMR+QI  FT+C SVTD +  A+KLV+LDEAD LT+ +Q ALRHL
Sbjct:    2 VSWTEKHRPTRLQDVSGNDHVIRALQSFTSMETTPNMILHGPPGSGKTSSIISMAKSFFGRTNISIMTLELNAGDSRSIGTMRDQIHFFTRCSSVTDRSTNALKLVILDEADGLTSCAQRALRHL 126          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: A0A6H5KU33_9PHAE (MEP9 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU33_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 4.080e-38
Identity = 73/125 (58.40%), Postives = 99/125 (79.20%), Query Frame = 1
Query:   22 VPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPFTKCLSVTDAT--AVKLVVLDEADSLTNLSQCALRHL 390
            V W E++RP+RL DV GN  VI AL+++ S++  P+L+LHGPPGSGKTS+IL++A+ F+GGT +S+M LELNA D R + TMR+QI  FT+C SV+D +  A+KLV+LDEAD LT+ +Q ALRHL
Sbjct:    2 VSWTEKHRPTRLQDVSGNDQVIRALQTFKSMEATPNLILHGPPGSGKTSSILSMAKSFFGGTNISTMTLELNAGDSRSIGTMRDQINFFTRCSSVSDKSTNALKLVILDEADGLTSCAQRALRHL 126          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: A0A5D3CEZ2_CUCME (Replication factor C subunit 5 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CEZ2_CUCME)

HSP 1 Score: 122 bits (307), Expect = 6.300e-33
Identity = 64/125 (51.20%), Postives = 88/125 (70.40%), Query Frame = 1
Query:   19 AVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPF--TKCLSVTDATAVKLVVLDEADSLTNLSQCALRH 387
            A+PWVE++RP  L DV  +  ++D +   +S + +PHLLL+GPPG+GKTS ILA+AR+ YG T   +M+LELNASD RG+  +R QIQ F  T+  S     +VKLV+LDEAD++T  +Q ALR 
Sbjct:   39 AIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-TNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRR 162          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: A0A1V2L724_CYBFA (Replication factor C subunit 3 n=2 Tax=Cyberlindnera fabianii TaxID=36022 RepID=A0A1V2L724_CYBFA)

HSP 1 Score: 125 bits (315), Expect = 1.480e-32
Identity = 63/129 (48.84%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    4 RHTHTAVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPFTKCLSVTDATAVKLVVLDEADSLTNLSQCALRHL 390
            + T   +PWVE+YRPS L DV G   V+D +R +     +PHLL +GPPG+GKTS I+A+AR+ YG     +MVLELNASD RG+  +RNQI+ F   + +      KL++LDEAD++TN++Q ALR +
Sbjct:    4 QRTEENLPWVEKYRPSSLDDVYGQPEVVDTVRKFVHDGRLPHLLFYGPPGTGKTSTIIALAREIYGSNY-KNMVLELNASDDRGIDVVRNQIKDFASTMQIFSK-GFKLIILDEADAMTNVAQNALRRI 130          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: A0A376B591_9ASCO (Probable Replication factor C subunit 3 n=1 Tax=Saccharomycodes ludwigii TaxID=36035 RepID=A0A376B591_9ASCO)

HSP 1 Score: 125 bits (315), Expect = 1.700e-32
Identity = 59/130 (45.38%), Postives = 89/130 (68.46%), Query Frame = 1
Query:    1 TRHTHTAVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPFTKCLSVTDATAVKLVVLDEADSLTNLSQCALRHL 390
            T+ T   +PW+E+YRP  L DV G  +V++ +R + +   +PHLL +GPPG+GKTS ILA+A++ YG     +M+LELNASD RG+  +RNQI+ F     +    + KL++LDEAD++T+ +Q ALR +
Sbjct:    6 TKSTTENLPWIEKYRPESLDDVYGQTNVVETVRRFVTEGKLPHLLFYGPPGTGKTSTILALAKEIYGPKHYKNMILELNASDDRGIDVVRNQIKDFASTRQIFAQKSFKLIILDEADAMTSAAQNALRRI 135          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: UPI0006265908 (replication factor C subunit 5 isoform X1 n=2 Tax=Orussus abietinus TaxID=222816 RepID=UPI0006265908)

HSP 1 Score: 125 bits (315), Expect = 2.860e-32
Identity = 62/126 (49.21%), Postives = 88/126 (69.84%), Query Frame = 1
Query:   13 HTAVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPFTKCLSVTDATAVKLVVLDEADSLTNLSQCALRHL 390
            H  +PWVE+YRPS+LVD+  +  +ID +  +  ++ +PHLL +GPPG+GKTS ILA A+Q Y     +SMVLELNASD RG+  +R QI  F    ++ +A   KL++LDEAD++TN +Q ALR +
Sbjct:   41 HKNLPWVEKYRPSKLVDLISHEEIIDTINKFIRVNQLPHLLFYGPPGTGKTSTILACAKQLYTPAQFTSMVLELNASDDRGIGIVRGQILSFASTRTIFNA-GFKLIILDEADAMTNDAQNALRRI 165          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: A0A5J4XVJ0_9CHLO (Replication factor C subunit 5-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XVJ0_9CHLO)

HSP 1 Score: 125 bits (313), Expect = 3.690e-32
Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 1
Query:    1 TRHTHTAVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPFTKCLSVTDATAVKLVVLDEADSLTNLSQCALRH 387
            T H+    PWVE++RP  L +V  +  +ID +R   + + +PHLLL+GPPG+GKTS ILA+ARQ YGG+ + SMVLELNASD RG+  +R QIQ F    ++  +T  KLV+LDE D++T  +Q ALR 
Sbjct:   12 TSHSKQDAPWVEKFRPKSLDEVAAHKEIIDTIRRLVNENRLPHLLLYGPPGTGKTSTILAVARQMYGGS-MGSMVLELNASDDRGIGIVRQQIQDFVSTRTIF-STKFKLVILDECDAMTKDAQFALRR 138          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: A0A835DJA5_9MAGN (AAA domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835DJA5_9MAGN)

HSP 1 Score: 122 bits (305), Expect = 4.220e-32
Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   19 AVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPF--TKCLSVTDATAVKLVVLDEADSLTNLSQCALRH 387
            A PWVE+YRP  L DV  +  ++D +   +S + +PHLLL+GPPG+GKTS ILA+AR+ YG     +M+LELNASD RG+  +R QIQ F  T+  S     +VKLV+LDEAD++T  +Q ALR 
Sbjct:   37 ATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAQ-FHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRR 160          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: A0A834LAP3_RHOSS (AAA domain-containing protein n=3 Tax=Ericales TaxID=41945 RepID=A0A834LAP3_RHOSS)

HSP 1 Score: 126 bits (317), Expect = 4.600e-32
Identity = 66/125 (52.80%), Postives = 89/125 (71.20%), Query Frame = 1
Query:   19 AVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPF--TKCLSVTDATAVKLVVLDEADSLTNLSQCALRH 387
            A PWVE+YRP  L DV  +  ++D +   +S + +PHLLL+GPPG+GKTS ILA+AR+ YG T + +MVLELNASD RG+  +R QIQ F  T+  S    ++VKLV+LDEAD++T  +Q ALR 
Sbjct:   39 ATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYG-TQMHNMVLELNASDERGIDVVRQQIQDFASTQSFSFGPKSSVKLVLLDEADAMTKDAQFALRR 162          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: A0A4S4DP33_CAMSI (NAF domain-containing protein n=2 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4DP33_CAMSI)

HSP 1 Score: 123 bits (309), Expect = 4.670e-32
Identity = 66/125 (52.80%), Postives = 89/125 (71.20%), Query Frame = 1
Query:   19 AVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPF--TKCLSVTDATAVKLVVLDEADSLTNLSQCALRH 387
            A PWVE+YRP  L DV  +  ++D +   +S + +PHLLL+GPPG+GKTS ILA+AR+ YG + + +MVLELNASD RG+  +R QIQ F  T+  S    +AVKLV+LDEAD++T  +Q ALR 
Sbjct:   26 ANPWVEKYRPQSLSDVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYG-SQMHNMVLELNASDDRGIDVVRQQIQDFASTQSFSFGAKSAVKLVLLDEADAMTKDAQFALRR 149          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q8QN66_ESV1K9.250e-4158.40EsV-1-224 n=2 Tax=root TaxID=1 RepID=Q8QN66_ESV1K[more]
A0A6H5KU33_9PHAE4.080e-3858.40MEP9 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A5D3CEZ2_CUCME6.300e-3351.20Replication factor C subunit 5 n=1 Tax=Cucumis mel... [more]
A0A1V2L724_CYBFA1.480e-3248.84Replication factor C subunit 3 n=2 Tax=Cyberlindne... [more]
A0A376B591_9ASCO1.700e-3245.38Probable Replication factor C subunit 3 n=1 Tax=Sa... [more]
UPI00062659082.860e-3249.21replication factor C subunit 5 isoform X1 n=2 Tax=... [more]
A0A5J4XVJ0_9CHLO3.690e-3250.39Replication factor C subunit 5-like n=1 Tax=Trebou... [more]
A0A835DJA5_9MAGN4.220e-3251.20AAA domain-containing protein n=1 Tax=Tetracentron... [more]
A0A834LAP3_RHOSS4.600e-3252.80AAA domain-containing protein n=3 Tax=Ericales Tax... [more]
A0A4S4DP33_CAMSI4.670e-3252.80NAF domain-containing protein n=2 Tax=Camellia sin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87007contigS-dermatodea_contig87007:2..391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1.5e-33
Seed eggNOG ortholog2880.D8LP38
KEGG koko:K10756
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
EggNOG free text desc.DNA replication
EggNOG OGsCOG0470@1,KOG0990@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-224 replication factor C small subunit
Ec32 orthologEc-06_006730.1
Exons1
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925360.5897553-CDS-S-dermatodea_contig87007:1..3911622925360.5897553-CDS-S-dermatodea_contig87007:1..391Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87007 2..391 -
1694079880.973417-CDS-S-dermatodea_contig87007:1..3911694079880.973417-CDS-S-dermatodea_contig87007:1..391Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87007 2..391 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87007.16839.1prot_S-dermatodea_contig87007.16839.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87007 2..391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87007.16839.1

>prot_S-dermatodea_contig87007.16839.1 ID=prot_S-dermatodea_contig87007.16839.1|Name=mRNA_S-dermatodea_contig87007.16839.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=130bp
TRHTHTAVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPP
GSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPFTKCL
SVTDATAVKLVVLDEADSLTNLSQCALRHL
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mRNA from alignment at S-dermatodea_contig87007:2..391-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87007.16839.1 ID=mRNA_S-dermatodea_contig87007.16839.1|Name=mRNA_S-dermatodea_contig87007.16839.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=390bp|location=Sequence derived from alignment at S-dermatodea_contig87007:2..391- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACACGTCACACACACACGGCTGTACCTTGGGTCGAGCGCTACAGACCATC GAGACTCGTGGATGTCGGCGGGAACGCACATGTCATTGATGCACTTCGTT CGTATTCATCGATTGACGACATGCCACACCTCCTTCTCCACGGACCACCG GGCTCTGGGAAGACTTCAGCCATACTAGCGATCGCTCGGCAATTTTATGG TGGAACAGTTCTGTCCTCAATGGTACTCGAGCTTAACGCGAGCGATGTTC GAGGCGTTCACACCATGCGAAACCAGATTCAGCCATTCACAAAGTGCTTG TCTGTCACCGATGCAACAGCAGTAAAACTGGTTGTTCTCGATGAAGCAGA CAGCCTCACAAACCTTTCACAGTGTGCTCTCAGGCATTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig87007:2..391-

>mRNA_S-dermatodea_contig87007.16839.1 ID=mRNA_S-dermatodea_contig87007.16839.1|Name=mRNA_S-dermatodea_contig87007.16839.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at S-dermatodea_contig87007:2..391- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACACGTCACACACACACGGCTGTACCTTGGGTCGAGCGCTACAGACCATC
GAGACTCGTGGATGTCGGCGGGAACGCACATGTCATTGATGCACTTCGTT
CGTATTCATCGATTGACGACATGCCACACCTCCTTCTCCACGGACCACCG
GGCTCTGGGAAGACTTCAGCCATACTAGCGATCGCTCGGCAATTTTATGG
TGGAACAGTTCTGTCCTCAATGGTACTCGAGCTTAACGCGAGCGATGTTC
GAGGCGTTCACACCATGCGAAACCAGATTCAGCCATTCACAAAGTGCTTG
TCTGTCACCGATGCAACAGCAGTAAAACTGGTTGTTCTCGATGAAGCAGA
CAGCCTCACAAACCTTTCACAGTGTGCTCTCAGGCATTTGACACGTCACA
CACACACGGCTGTACCTTGGGTCGAGCGCTACAGACCATCGAGACTCGTG
GATGTCGGCGGGAACGCACATGTCATTGATGCACTTCGTTCGTATTCATC
GATTGACGACATGCCACACCTCCTTCTCCACGGACCACCGGGCTCTGGGA
AGACTTCAGCCATACTAGCGATCGCTCGGCAATTTTATGGTGGAACAGTT
CTGTCCTCAATGGTACTCGAGCTTAACGCGAGCGATGTTCGAGGCGTTCA
CACCATGCGAAACCAGATTCAGCCATTCACAAAGTGCTTGTCTGTCACCG
ATGCAACAGCAGTAAAACTGGTTGTTCTCGATGAAGCAGACAGCCTCACA
AACCTTTCACAGTGTGCTCTCAGGCATTTG
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