mRNA_S-dermatodea_contig8650.16800.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8650.16800.1
Unique NamemRNA_S-dermatodea_contig8650.16800.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8650.16800.1 vs. uniprot
Match: A0A6H5LL23_9PHAE (GT20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL23_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 2.840e-36
Identity = 109/242 (45.04%), Postives = 126/242 (52.07%), Query Frame = 1 
Query:    1 GANKGNFVHMVLSRLGW---ASSLPGTLPAGDSIGDVRGVAGDRTKRFCLCVGDDVSDEDMFIAVKSYEASTRTSGNDCSGGGDAAPTLSMRSGKGS------------LSTGS-----FGEPPRQQS------LLTVTVGRKASDADSWLPGVDAVVSLLRTLVRAPSRRETAQLSKFAPHLA----SSMNHMHLFQGGRDPDSPTRSIRASSA-----------GSAASIRGFMGTVAEG 603
            GANKGNFVHMVL RLGW    SS P    A D+       A     RFCLCVGDDVSDE+MF+AVKSYE    TS    S G  A+P  ++    GS            L TG        EP   Q+      L TVTVG K SDAD+WLPGV AVVSLLR L R  SR  TAQ S  AP  A    S+   +   +G   P SPTRS+R++SA           G+AA    FM + A+G
Sbjct:  231 GANKGNFVHMVLDRLGWPSEVSSFPAPADATDTDAPAT-TASSAGGRFCLCVGDDVSDEEMFVAVKSYEG-VATSKGQRSVGTSASPASALLHTDGSGAEAAPASIPPVLPTGKENMTPAAEPGHHQAMQPQTHLFTVTVGSKPSDADAWLPGVSAVVSLLRILGRVTSRHGTAQRSMLAPRAAAVGISNSPMLEPHRGMTQPVSPTRSVRSASASNADDADATASGTAAKNHSFMASFADG 470
[Close]
BLAST of mRNA_S-dermatodea_contig8650.16800.1 vs. uniprot
Match: D7G011_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G011_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 8.680e-34
Identity = 104/226 (46.02%), Postives = 117/226 (51.77%), Query Frame = 1 
Query:    1 GANKGNFVHMVLSRLGW---ASSLPGTLPAGDSIGDVRGVAGDRTKRFCLCVGDDVSDEDMFIAVKSYEASTRTSGNDCSGGGDAAPTLSM--RSGKGS-----------LSTGSFGEPPRQQS------------------LLTVTVGRKASDADSWLPGVDAVVSLLRTLVRAPSRRETAQLSKFAPHLA----SSMNHMHLFQGGRDPDSPTRSIRASSAGSA 564
            GANKGNFVHMVL RLGW    SS P    A D+   V   A     RFCLCVGDDVSDE+MFIAVKSYE    TS   CS G  A+P  +     G G+           L TG     P  +S                  L TVTVG K SDAD+WLPGV AVVSLLR L R  SR  TAQ S  AP  A    S+   +   +G     SPTRS R++SA +A
Sbjct:  936 GANKGNFVHMVLDRLGWPSEVSSFPAPADATDTDAAVS-TASSAGGRFCLCVGDDVSDEEMFIAVKSYEG-VATSKGQCSVGPSASPASAPFHTDGPGAEAAPAFTPPSVLPTGKENVTPAAESGRHQAMQXXXXXXXXQTHLFTVTVGSKPSDADAWLPGVTAVVSLLRILGRVTSRHGTAQRSMLAPRAAAVGISNSPMLEPHRGMTQSVSPTRSFRSASASNA 1159
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8650.16800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LL23_9PHAE2.840e-3645.04GT20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G011_ECTSI8.680e-3446.02Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8650contigS-dermatodea_contig8650:5137..7599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue8.9e-25
Seed eggNOG ortholog2880.D7G011
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
EggNOG free text desc.trehalose biosynthetic process
EggNOG OGsCOG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.G
CAZyGT20
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons3
Model size648
Cds size621
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8650.16800.1prot_S-dermatodea_contig8650.16800.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8650 5137..7572 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925357.4736228-CDS-S-dermatodea_contig8650:5136..53611622925357.4736228-CDS-S-dermatodea_contig8650:5136..5361Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8650 5137..5361 -
1694079878.7817726-CDS-S-dermatodea_contig8650:5136..53611694079878.7817726-CDS-S-dermatodea_contig8650:5136..5361Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8650 5137..5361 -
1622925357.4837012-CDS-S-dermatodea_contig8650:5623..58571622925357.4837012-CDS-S-dermatodea_contig8650:5623..5857Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8650 5624..5857 -
1694079878.7947447-CDS-S-dermatodea_contig8650:5623..58571694079878.7947447-CDS-S-dermatodea_contig8650:5623..5857Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8650 5624..5857 -
1622925357.4943871-CDS-S-dermatodea_contig8650:7410..75721622925357.4943871-CDS-S-dermatodea_contig8650:7410..7572Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8650 7411..7572 -
1694079878.8047786-CDS-S-dermatodea_contig8650:7410..75721694079878.8047786-CDS-S-dermatodea_contig8650:7410..7572Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8650 7411..7572 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925357.5082211-UTR-S-dermatodea_contig8650:7572..75991622925357.5082211-UTR-S-dermatodea_contig8650:7572..7599Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8650 7573..7599 -
1694079878.813746-UTR-S-dermatodea_contig8650:7572..75991694079878.813746-UTR-S-dermatodea_contig8650:7572..7599Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8650 7573..7599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8650.16800.1

>prot_S-dermatodea_contig8650.16800.1 ID=prot_S-dermatodea_contig8650.16800.1|Name=mRNA_S-dermatodea_contig8650.16800.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=207bp
MVLSRLGWASSLPGTLPAGDSIGDVRGVAGDRTKRFCLCVGDDVSDEDMF
IAVKSYEASTRTSGNDCSGGGDAAPTLSMRSGKGSLSTGSFGEPPRQQSL
LTVTVGRKASDADSWLPGVDAVVSLLRTLVRAPSRRETAQLSKFAPHLAS
SMNHMHLFQGGRDPDSPTRSIRASSAGSAASIRGFMGTVAEGNAGGGACE
AGMRAMG
back to top

mRNA from alignment at S-dermatodea_contig8650:5137..7599-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8650.16800.1 ID=mRNA_S-dermatodea_contig8650.16800.1|Name=mRNA_S-dermatodea_contig8650.16800.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2463bp|location=Sequence derived from alignment at S-dermatodea_contig8650:5137..7599- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGCCAACAAGGGGAACTTCGTGCACATGGTGCTCTCCAGGCTGGGGTG
GGCGTCGAGCTTGCCAGGCACCCTACCAGCGGGGGATTCAATCGGCGATG
TCCGTGGTGTTGCAGGCGACCGGACGAAACGCTTCTGCCTCTGTGTGGGT
GACGATGTTAGCGACGAGGACATGTTCATCGCCGTCAAGGTGAGAAGAAC
AGGGGGCTAGTACCGAAAGGGTCGATGTGCTTTTCCTTGAAGAGTTTGTG
GAATTCAAAATATTTCACCGTATTTGATACACGTATACATGTGCGGGCCA
CAGCCTTAATAGTGTATGATTGATTTTGTTTTATTTGTACACGTATAGCC
GATCGGCTTATTCCGACCCGACTCGTGGTCATATACGCAAGAAGAGTCAA
GGAGAAAAATAAACACTGTAATCATAACTCTACTTATTATACTAAGCACC
GTACCGTCCCTGGTACTTACTATGGTACAAGAAAGAAGAAAAGGCACCCC
AGATATAGAAAAACGCTAGAAGATAACTCGGACTCAAACAATGCTCCCTC
GCCTCTCCACAGGTCCTTTTTAAGCTACGCCCAGTTGCAACGCGGTAGGG
ACATCAGTATAAGAGTTAGAGCAGCTGGAAAAACAAAAACAAATAGAAAA
TATAGATAAAAAGGAAAGAACAGAAGACAAAAGAAAAAAATATGAAACCG
AAAGGCAGAGAGAGAGAGAAGCAATGACCAGGATAGGCTGGAATGATCAA
TTATCGAGGTTTCGAGGTCGATGTTGTTGTGAATGGCCGTATCTCGTGTT
TTTTGTATTTTTTTCATGGATTTCTGTTGCTTGGGTACTCATGGTCGGAA
CAGTTGGGTATTGTATTCATGGTGGTGATATTTGGTCCTGATTACTTGAT
TACTTGATTATAGTGTACCTCCGTAACAGACTCTTAAACCTTTTGGTACT
AGCCCTCTGTTTGGAGCGCCTGTTAGCACGTGATGAGGCGTGCTTGAAGC
GGGCCCCTGGGGAACTCCATGGGTTATGACGCAGGAACGAGAGAGAACGG
AGCGCAAGGGGAACGGGGCTGTAGCTGTAGACTGACATGGAGAGAGTTTT
TGTTGTTTCGGAGAGCCCTATGAATTATGAATATAATACTATAATATAAT
AGTATAATACTTAGTACCAAAAGGGTTAAGGAGTCCAATGCTTGTTGCGG
CAGTGGCATCCGGTTGAATGTTTTTTTGTTTTTTTGCGATCAAAACAACG
AAACACGCAAGTCAGCAGCAGCAGAAGACGCAGTTGAACGGTGCACAACT
GGGGCGATCGTATATTAAATTCAGAGCTACACATGGCTCTATTATACAGC
AGTAGTAGAGCTTTATATATACTGTACTACACTATACTATACTATACTAG
GGTTAGGGTTAGGGTACGTACTATTGTATTATAGGTAGCCACGGGTTAGG
GTTAGGGTTAGGCTACGCCCGTGCGGCCTGAAGTTGTGTGGCGCCCAACA
CAAACATCAACTTGTTTTGGGATAAACAATCGTATTTTGGAGTTTGTTGG
ACAACGCTAATCTTCATACAAAAAACGTTCAAAGTGGTACAGTATTCACT
AAAGCACAGATATAGTAGTTCGTATATACTGCGTTTATTTTTTCCTTGAT
TCTCCTACTCATTTTTTACACTCATCCCCCCCCCCCCCGCCCCGCCCCGC
CCCGCCCCGCCCACTGCCCAATGGTCACACCACTCCTTCCAGTCGTATGA
AGCCTCGACGCGCACATCCGGCAACGATTGCTCCGGAGGAGGCGACGCGG
CTCCGACCCTGTCAATGCGTTCGGGCAAGGGCAGCTTGTCTACCGGCTCC
TTCGGCGAGCCTCCGAGGCAGCAGAGCCTGCTCACCGTAACTGTGGGAAG
GAAGGCTTCCGACGCGGACTCCTGGTTGCCTGGGGTGGACGCCGTGGTGT
CCCTGCTTCGCACGCTGGTTCGCGCTGTGAGTAGTTGCGTTTCCGTAGGA
GTGAGGGTTTCATTGATTGAAGGTTGAATTTAAGTCGGGGTTGAAACCGG
TGGCTTGCGATTTTTACCCCGCCAGGAGTGCTCAAAACGTATTCGTGGGA
GCTGTCCCTATCTCGAGGGTACTTACTCTTCCAACACACCTAAACTTCAC
AAGCCTTACGAAACCCTGACAACGACTCACCCTTCTTCCCCCCCACCCCC
ACCCCCACCCCTATCACCCCCTCCGTGATCGATCGCAGCCATCCCGCCGC
GAGACTGCCCAGCTGTCCAAGTTCGCACCCCACTTAGCCTCCTCCATGAA
CCACATGCATCTCTTCCAAGGCGGTCGAGACCCCGATTCTCCCACGCGCT
CCATTCGCGCTTCATCGGCTGGGAGTGCCGCCTCCATCCGTGGCTTCATG
GGAACCGTGGCGGAGGGAAACGCGGGAGGGGGTGCGTGCGAGGCGGGCAT
GCGGGCGATGGGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8650:5137..7599-

>mRNA_S-dermatodea_contig8650.16800.1 ID=mRNA_S-dermatodea_contig8650.16800.1|Name=mRNA_S-dermatodea_contig8650.16800.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at S-dermatodea_contig8650:5137..7599- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGCTCTCCAGGCTGGGGTGGGCGTCGAGCTTGCCAGGCACCCTACC
AGCGGGGGATTCAATCGGCGATGTCCGTGGTGTTGCAGGCGACCGGACGA
AACGCTTCTGCCTCTGTGTGGGTGACGATGTTAGCGACGAGGACATGTTC
ATCGCCGTCAAGATGGTGCTCTCCAGGCTGGGGTGGGCGTCGAGCTTGCC
AGGCACCCTACCAGCGGGGGATTCAATCGGCGATGTCCGTGGTGTTGCAG
GCGACCGGACGAAACGCTTCTGCCTCTGTGTGGGTGACGATGTTAGCGAC
GAGGACATGTTCATCGCCGTCAAGTCGTATGAAGCCTCGACGCGCACATC
CGGCAACGATTGCTCCGGAGGAGGCGACGCGGCTCCGACCCTGTCAATGC
GTTCGGGCAAGGGCAGCTTGTCTACCGGCTCCTTCGGCGAGCCTCCGAGG
CAGCAGAGCCTGCTCACCGTAACTGTGGGAAGGAAGGCTTCCGACGCGGA
CTCCTGGTTGCCTGGGGTGGACGCCGTGGTGTCCCTGCTTCGCACGCTGG
TTCGCGCTTCGTATGAAGCCTCGACGCGCACATCCGGCAACGATTGCTCC
GGAGGAGGCGACGCGGCTCCGACCCTGTCAATGCGTTCGGGCAAGGGCAG
CTTGTCTACCGGCTCCTTCGGCGAGCCTCCGAGGCAGCAGAGCCTGCTCA
CCGTAACTGTGGGAAGGAAGGCTTCCGACGCGGACTCCTGGTTGCCTGGG
GTGGACGCCGTGGTGTCCCTGCTTCGCACGCTGGTTCGCGCTCCATCCCG
CCGCGAGACTGCCCAGCTGTCCAAGTTCGCACCCCACTTAGCCTCCTCCA
TGAACCACATGCATCTCTTCCAAGGCGGTCGAGACCCCGATTCTCCCACG
CGCTCCATTCGCGCTTCATCGGCTGGGAGTGCCGCCTCCATCCGTGGCTT
CATGGGAACCGTGGCGGAGGGAAACGCGGGAGGGGGTGCGTGCGAGGCGG
GCATGCGGGCGATGGGCCCATCCCGCCGCGAGACTGCCCAGCTGTCCAAG
TTCGCACCCCACTTAGCCTCCTCCATGAACCACATGCATCTCTTCCAAGG
CGGTCGAGACCCCGATTCTCCCACGCGCTCCATTCGCGCTTCATCGGCTG
GGAGTGCCGCCTCCATCCGTGGCTTCATGGGAACCGTGGCGGAGGGAAAC
GCGGGAGGGGGTGCGTGCGAGGCGGGCATGCGGGCGATGGGC
back to top