mRNA_S-dermatodea_contig86126.16762.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86126.16762.1
Unique NamemRNA_S-dermatodea_contig86126.16762.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig86126.16762.1 vs. uniprot
Match: D7FLR1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLR1_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.390e-15
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 QSVHPRMGYDMSDSIFMQEMQAAGREKESKKAMEERVALEAFRAATLK 144
            Q++HPRMGYDMSDS+FMQ  +AAGREKES++A+EER ALEAFRAA LK
Sbjct:   46 QTIHPRMGYDMSDSLFMQHQEAAGREKESRRALEERAALEAFRAAALK 93
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86126.16762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLR1_ECTSI2.390e-1577.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86126contigS-dermatodea_contig86126:347..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_005350.1
Exons1
Model size159
Cds size141
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925354.9632468-CDS-S-dermatodea_contig86126:346..4871622925354.9632468-CDS-S-dermatodea_contig86126:346..487Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86126 347..487 -
1694079877.2318327-CDS-S-dermatodea_contig86126:346..4871694079877.2318327-CDS-S-dermatodea_contig86126:346..487Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86126 347..487 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925354.9750943-UTR-S-dermatodea_contig86126:487..5051622925354.9750943-UTR-S-dermatodea_contig86126:487..505Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86126 488..505 -
1694079877.2409008-UTR-S-dermatodea_contig86126:487..5051694079877.2409008-UTR-S-dermatodea_contig86126:487..505Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86126 488..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86126.16762.1prot_S-dermatodea_contig86126.16762.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86126 347..487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86126.16762.1

>prot_S-dermatodea_contig86126.16762.1 ID=prot_S-dermatodea_contig86126.16762.1|Name=mRNA_S-dermatodea_contig86126.16762.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=47bp
MGYDMSDSIFMQEMQAAGREKESKKAMEERVALEAFRAATLKVGIK*
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mRNA from alignment at S-dermatodea_contig86126:347..505-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86126.16762.1 ID=mRNA_S-dermatodea_contig86126.16762.1|Name=mRNA_S-dermatodea_contig86126.16762.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at S-dermatodea_contig86126:347..505- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGAGTGTGCACCCGCGAATGGGCTACGACATGTCGGACAGCATCTTCAT
GCAGGAGATGCAGGCTGCCGGGCGGGAGAAGGAGTCGAAGAAGGCGATGG
AGGAGAGGGTAGCGCTAGAGGCGTTTCGAGCGGCAACTCTAAAGGTAGGT
ATTAAATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig86126:347..505-

>mRNA_S-dermatodea_contig86126.16762.1 ID=mRNA_S-dermatodea_contig86126.16762.1|Name=mRNA_S-dermatodea_contig86126.16762.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at S-dermatodea_contig86126:347..505- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCTACGACATGTCGGACAGCATCTTCATGCAGGAGATGCAGGCTGC
CGGGCGGGAGAAGGAGTCGAAGAAGGCGATGGAGGAGAGGGTAGCGCTAG
AGGCGTTTCGAGCGGCAACTCTAAAGGTAGGTATTAAATAAATGGGCTAC
GACATGTCGGACAGCATCTTCATGCAGGAGATGCAGGCTGCCGGGCGGGA
GAAGGAGTCGAAGAAGGCGATGGAGGAGAGGGTAGCGCTAGAGGCGTTTC
GAGCGGCAACTCTAAAGGTAGGTATTAAATAA
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