mRNA_S-dermatodea_contig12739.1676.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12739.1676.1
Unique NamemRNA_S-dermatodea_contig12739.1676.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12739.1676.1 vs. uniprot
Match: A0A6H5KEG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG0_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.230e-19
Identity = 47/62 (75.81%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:  124 GGQFAQKPVLLRADQDSGMALVKSKDGRTKWLTVSADPSS--PS--WDERVRTWASKLGVCA 297
            GGQ      L+R+DQDSGMALVKSKDGRTKWLTVS DP+S  PS  WDERVRTWAS LGVCA
Sbjct:    8 GGQDGSAATLVRSDQDSGMALVKSKDGRTKWLTVSTDPTSTPPSTTWDERVRTWASMLGVCA 69
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12739.1676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KEG0_9PHAE1.230e-1975.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12739contigS-dermatodea_contig12739:541..4556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-23_000210.1
Exons3
Model size344
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12739.1676.1prot_S-dermatodea_contig12739.1676.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12739 1515..4556 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924259.86434-UTR-S-dermatodea_contig12739:540..6291622924259.86434-UTR-S-dermatodea_contig12739:540..629Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12739 541..629 +
1694079132.0428283-UTR-S-dermatodea_contig12739:540..6291694079132.0428283-UTR-S-dermatodea_contig12739:540..629Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12739 541..629 +
1622924259.8736734-UTR-S-dermatodea_contig12739:1495..15141622924259.8736734-UTR-S-dermatodea_contig12739:1495..1514Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12739 1496..1514 +
1694079132.0574582-UTR-S-dermatodea_contig12739:1495..15141694079132.0574582-UTR-S-dermatodea_contig12739:1495..1514Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12739 1496..1514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924259.8832793-CDS-S-dermatodea_contig12739:1514..16331622924259.8832793-CDS-S-dermatodea_contig12739:1514..1633Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12739 1515..1633 +
1694079132.0706353-CDS-S-dermatodea_contig12739:1514..16331694079132.0706353-CDS-S-dermatodea_contig12739:1514..1633Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12739 1515..1633 +
1622924259.8967063-CDS-S-dermatodea_contig12739:4441..45561622924259.8967063-CDS-S-dermatodea_contig12739:4441..4556Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12739 4442..4556 +
1694079132.0848243-CDS-S-dermatodea_contig12739:4441..45561694079132.0848243-CDS-S-dermatodea_contig12739:4441..4556Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12739 4442..4556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12739.1676.1

>prot_S-dermatodea_contig12739.1676.1 ID=prot_S-dermatodea_contig12739.1676.1|Name=mRNA_S-dermatodea_contig12739.1676.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=78bp
MLADNGGQFAQKPVLLRADQDSGMALVKSKDGRTKWLTVSADPSSPSWDE
RVRTWASKLGVCAQPPPATGGTPLPTPP
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mRNA from alignment at S-dermatodea_contig12739:541..4556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12739.1676.1 ID=mRNA_S-dermatodea_contig12739.1676.1|Name=mRNA_S-dermatodea_contig12739.1676.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4016bp|location=Sequence derived from alignment at S-dermatodea_contig12739:541..4556+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TACACGGCATTGCTGTGTACCGAGGGAGAACAAACCTTTTAGACGCCACA
CCAGCACAGGGCAGCAACCCAAAGGAAGGCCAGCGAAAGGTGAGCCACGC
GCTTGGAGAGGCCTCCGCCGGGAGAGGTCCCGAGGCCCTAGCTCCTATTC
AGTCTTCGGGAAAGGCCGGTCCCTGTCCCGAGCACACATATCTCTCTTCA
TCAGATCTTGCAGGCATCATGCCCTTGAACACGTGTAAGCCCTCAGCCGT
GGCCCGTTGCCTGGGCATCGCCATCGCGTCCCTGCGCTGGGCTGCGCTTG
AGACGAACGCCGAGTCGTGCATACACAGCTTCCCTGAATGAGTGGGGTTT
GGTTGTCCGAATGGCTCCTAACAGGTGGCGCAACTTCGATGATATCTGTG
TAATAGCTGCTTGTCTAGGTTACTCTTGGGAAGAGGCGCTGACTTCCTTG
ATGGCACGGCACAGCGCGTCGCACGGGTGCTCCGACCGAGCAGCCCCGTG
AAGCTGTGTGTGTATTGCATGGGGCATGCAGCACAACAGGCCGTTTGCCG
CTGCGGTTCGTGCAGATGTGCCTGTTATTTATCCTGTCTCTTGTTGCCTT
GTACTGTATGTAGGAACAGCGCGTGCATACTGTATATGCTTTGCGCTTCA
TTCAAGGCGGAAACAGCGGAGCATTCATTTTGTTCCATCGAGTACAGCAG
TCATCATATAGATATTTATATTTCGCTCGACATGCATTATCTCGACATCA
TCTGATATTATCATGAATCGTCATCATCGCGCAGACCAAACCCAAAGAAT
ACCAAAACCATGCGATGGTTATGCGATGGTTTCATTCCAACGAATCCCTC
ATCACCTGCGCCGCTTCTCCTTGCCCTACATATGCCAAAACCATGCGATG
GTTTTTCTCCAACGAATATCTTGTCACCTGCGCCGCTTCTACATACTCTC
GCCAGTCAACTCGGGCTACGAGAAATGCTTGCAGATAATGGTGGGCAATT
TGCCCAGAAACCTGTCCTACTCAGAGCTGACCAAGACTCTGGCATGGCTC
TAGTCAAGAGCAAGGATGGCCGAACCAAGTGGCTGACTGTGAGGTGTGTG
TGTGTGGTGTGTGTATTGAACCAAAATCGCGTGTGCTCCGATGTCATTTA
GCGCAGCTTGGGGCGCCGGTGTGCTCCTGCTTGATTGCGTTGCTCGTTGG
AAGAAAGCTGAATCAATTTTGTTGCGCCCTTGATGACGGCCGGCCTCTCT
TCAACCTTGACGGTTGAGCAGACACCATGCATGACACCATCTTCATCAGG
CGGCATGGTACCATTGTGTATGCCAGCGGGTATGTTGCTTATGTTGACAG
TAGTCTACTGAACTATTAATACCACTGCAGGGATCATGGAATACATGGAC
TACTTACCAGGTATGATACCCTGGTATGGTACGAACACACCAGTCGTATC
TCTACGGACAGCAAAAGTACCAGCTGTTGAGACCTCGAGGGCTGTAATAG
TACAACTCTACAGCATGCTGCAGACTACTACTGTATTAAAAGTATCATGC
TTCTAGTACAAGTATTAGTATTTCAATTTTTATAAAAAACAAAATCTAGT
TCCCATGTACATCCCTAACTCTCAAGCACACTGGTTCAGGGGAAACTGAA
AGTAGGTACGTCCTTTACTCTCTCAGTAAAGCATATATTAGTATTTCAAT
TGTAAAGCTCTGTGGGAGCAGCTGTTTTAGTATGATTTACACACTTGCAT
GCAAAAGTATTAGGGCCCAAAGTATTATGTACAAGTGCTGTCTGTATGAT
AGGGTCGGAGGCTGCGAGGGAGAGTCTCGGTCCAGAGGTTTATAATAACA
ACAAACTGCAAAATCTACTTCCCATGTACACCCCTAACTCACTGGCACAT
TGGCTCAGGGGAAACTGAAAGTATGTGCTGTACTGTATCCTTTACTCACT
CTTCACCAAAAAATGCTCGATGCGCGGTACAACATGCGTATGAGTATTAT
ACAGCTGTGGTACAAGGGGTATCACATCTGTCAGGTCAGGTCTACCTTCT
GAGTATACTTGCAAGCGGCGTGCACCTGCTGTACATTCCCATGTCGATGT
GTCGATGTGTCGATGTGCCTGTGTGTCTCCTCCAGGATTTGACACCGAAC
CTGACAGCAGATGTTGCGATCTCTTTGATTATTTCAGGCATTCCTCTATT
GTAGTAATCATATAAACAGGGATGTTCATTACCGGGTAACGGTGACGTTG
TTATATCCATGATCGACGGGAAAGAGGCGGCGGAATTCCATTATTTTACT
GGTATATTGGTATACATACATACTATAATACTGTAGTTGTCATAACAGGG
ATGCTCCATACCGCCAGCGCTGGACCTACATACTAAATCTACTTGGTTTA
TACTAATTACCACTGTATTTTGACTCAAGTCCCTAGACGGTTAACCTTGG
TCGAGCAGTACATGTATATGACATGGTGCATGCACTGCAATCGCACCGGG
TTGCATACCAAAAGGCAGCTGTGTCGATCTGCCCTTGCCGCAGCCCCGCG
ACAAAGACAAACTCTATCATACCGGCCCGCGCGTATACAGTACTTGTATT
GTAGAGAGGAAACTGACACGTAACTTAGTCGCTGCGATTGAAGCGAAAGA
ATTGCCATTTCCTTACCAATGCACCATATTCCTCGCTGTTTCTTACCTTG
GGCTGACCGCTACTGCTGTCTTTAGTCTTTAGGCGTTCTTCTCTGTTCCC
GAGAAAAGGCAGATACTAATTGTATAAAAATATAATATCATACTACAGTT
AGTATTATCAGGGGCGGTACGGTGTATAGTAGAAGTAGAATTCTGATTAG
TTACTTTTCTCCTTGACTCTTTGCGTGTCTGACCACAAGTCGGGTATGTC
GGATTATGCCGATCGGCTACAGTATACGTGTGCAAATCAAATCATTCAAA
TCAATCAAATCAAACAGTACCGCCATGCACGTGTTTCTGAGCAGGCCGGT
GCTTGTGTGCCTAACCCGGTGCGACTACTATATAGTACAATACAATACAA
TACAATACAGGACATGATATGCGTGAAAAAGTCGACCAAGGTTAACCCTC
TTCGTTAGACTCGACTTTTTTTACGCCTACCACAGCAGTAGAGTTATCAT
TATATACTACTCATATCTGTACAGCAGCACTGTCTCCGTCCCCCTTTTTT
TTTTTTGTGGCTCAACGTACGCGACTGACCTACCCCTACCCGAATCCCGT
CCGTGGTGACATAAGACATAAGACATAAAGTTAGGATACAAGATACATGA
TATTGATACCCCTGGTGGGACTGAGCCGGTGTCTCGGCCGAGGCCCAAGT
CAAATCTGCCATGTCGTTGTGTATTACCGAACAGCCACCCCAACCGCGGC
TCCTCTTGGCCGCATGGTATAGAATGCATATCATACGGTATGGTAGTGGC
GATAGAAATGTGACGCCCTGCCTTGCTCGCTTAGCTTAGCTTAGCTATCA
ATGCTTGACGTGCTCTTGCAGCCTTGTCGGCAATACTCGCAGTATAGTCA
CAATTTTCTGGGTAAAAACGCATTTGTCCAGGCCTCCCCGTGGCTCGCCG
ATTCCTCCTGTTTATCACCCCGCCGTTACATTGTTTTGCTTTTATCATAC
CAGCTCCTATAATTACCCCGCGATCTCCCCTTTATATATCCGTGTTGGGC
ACGATATGCATTTACGACGACCAGCAGCTGGTATCATCCTTGTGAAACTG
AGCCTGGCCGGCGAGAACCCGGCATATCGCTCCGTCCCGGCATTTTTGGG
GCGTGTGGTCCATGTCCGTATGGATACGACATGCGTTTAACATAGGTACG
TACCCCCCCCCCCATACCCCATACCCCATGCCCCATCCCGCCACACCGCA
GCGCCGACCCATCCTCCCCCTCCTGGGACGAGCGCGTGAGGACCTGGGCG
AGCAAGCTCGGGGTCTGCGCTCAGCCTCCCCCCGCAACGGGAGGAACCCC
TCTGCCCACCCCTCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12739:541..4556+

>mRNA_S-dermatodea_contig12739.1676.1 ID=mRNA_S-dermatodea_contig12739.1676.1|Name=mRNA_S-dermatodea_contig12739.1676.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at S-dermatodea_contig12739:541..4556+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTTGCAGATAATGGTGGGCAATTTGCCCAGAAACCTGTCCTACTCAG
AGCTGACCAAGACTCTGGCATGGCTCTAGTCAAGAGCAAGGATGGCCGAA
CCAAGTGGCTGACTGTGAGATGCTTGCAGATAATGGTGGGCAATTTGCCC
AGAAACCTGTCCTACTCAGAGCTGACCAAGACTCTGGCATGGCTCTAGTC
AAGAGCAAGGATGGCCGAACCAAGTGGCTGACTGTGAGCGCCGACCCATC
CTCCCCCTCCTGGGACGAGCGCGTGAGGACCTGGGCGAGCAAGCTCGGGG
TCTGCGCTCAGCCTCCCCCCGCAACGGGAGGAACCCCTCTGCCCACCCCT
CCCCGCCGACCCATCCTCCCCCTCCTGGGACGAGCGCGTGAGGACCTGGG
CGAGCAAGCTCGGGGTCTGCGCTCAGCCTCCCCCCGCAACGGGAGGAACC
CCTCTGCCCACCCCTCCC
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