mRNA_S-dermatodea_contig8596.16751.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8596.16751.1
Unique NamemRNA_S-dermatodea_contig8596.16751.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8596.16751.1 vs. uniprot
Match: D8LFQ9_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ9_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 7.740e-12
Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 YFYNRRTRVPRWTLPSRASYIPDPSRPAGYRIFA 102
            Y+YNRRTRVPRWTLP  A+++PDP+RPAGYRIFA
Sbjct:  316 YYYNRRTRVPRWTLPPTATFVPDPNRPAGYRIFA 349
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8596.16751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFQ9_ECTSI7.740e-1279.41WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8596contigS-dermatodea_contig8596:209..316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925353.964883-CDS-S-dermatodea_contig8596:208..3161622925353.964883-CDS-S-dermatodea_contig8596:208..316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8596 209..316 +
1694079876.5028255-CDS-S-dermatodea_contig8596:208..3161694079876.5028255-CDS-S-dermatodea_contig8596:208..316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8596 209..316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8596.16751.1prot_S-dermatodea_contig8596.16751.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8596 209..316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8596.16751.1

>prot_S-dermatodea_contig8596.16751.1 ID=prot_S-dermatodea_contig8596.16751.1|Name=mRNA_S-dermatodea_contig8596.16751.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=36bp
YFYNRRTRVPRWTLPSRASYIPDPSRPAGYRIFAPA
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mRNA from alignment at S-dermatodea_contig8596:209..316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8596.16751.1 ID=mRNA_S-dermatodea_contig8596.16751.1|Name=mRNA_S-dermatodea_contig8596.16751.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=108bp|location=Sequence derived from alignment at S-dermatodea_contig8596:209..316+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TACTTCTACAACCGGCGCACACGGGTCCCCCGCTGGACGCTGCCGTCGAG
GGCGTCGTACATCCCTGACCCCTCCCGCCCCGCTGGGTACCGCATCTTCG
CACCAGCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8596:209..316+

>mRNA_S-dermatodea_contig8596.16751.1 ID=mRNA_S-dermatodea_contig8596.16751.1|Name=mRNA_S-dermatodea_contig8596.16751.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at S-dermatodea_contig8596:209..316+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TACTTCTACAACCGGCGCACACGGGTCCCCCGCTGGACGCTGCCGTCGAG
GGCGTCGTACATCCCTGACCCCTCCCGCCCCGCTGGGTACCGCATCTTCG
CACCAGCATACTTCTACAACCGGCGCACACGGGTCCCCCGCTGGACGCTG
CCGTCGAGGGCGTCGTACATCCCTGACCCCTCCCGCCCCGCTGGGTACCG
CATCTTCGCACCAGCA
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