mRNA_S-dermatodea_contig85518.16717.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85518.16717.1
Unique NamemRNA_S-dermatodea_contig85518.16717.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85518.16717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85518contigS-dermatodea_contig85518:223..654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size433
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925351.226804-CDS-S-dermatodea_contig85518:222..6541622925351.226804-CDS-S-dermatodea_contig85518:222..654Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85518 223..654 +
1694079874.6396255-CDS-S-dermatodea_contig85518:222..6541694079874.6396255-CDS-S-dermatodea_contig85518:222..654Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85518 223..654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85518.16717.1prot_S-dermatodea_contig85518.16717.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85518 223..654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85518.16717.1

>prot_S-dermatodea_contig85518.16717.1 ID=prot_S-dermatodea_contig85518.16717.1|Name=mRNA_S-dermatodea_contig85518.16717.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=144bp
QVATETGKGAARTMRKKRRRFPLAPDRGEQNKIIARENFTHRNARVQRAS
RQKGRKGGKNEERERERRRAYTYHLLRHRRKQPLRRMPAPFYESHLISPP
PLVANLTLLAPRRRPAGSFFTGVHRRSLACWRLDLKGRRTQRR*
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mRNA from alignment at S-dermatodea_contig85518:223..654+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85518.16717.1 ID=mRNA_S-dermatodea_contig85518.16717.1|Name=mRNA_S-dermatodea_contig85518.16717.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at S-dermatodea_contig85518:223..654+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGCGACGGAAACGGGCAAGGGAGCAGCGCGGACGATGAGGAAAAA
GCGGCGGAGATTTCCCCTTGCGCCTGACAGGGGTGAACAAAACAAAATCA
TCGCGCGCGAGAATTTCACGCACCGCAACGCACGTGTGCAGCGAGCAAGC
AGACAGAAAGGGAGGAAGGGAGGAAAGAATGAAGAGAGAGAGAGAGAGAG
ACGGAGGGCATATACATACCATCTCCTACGCCACCGCCGCAAGCAACCGC
TTCGGCGGATGCCGGCGCCCTTCTACGAGAGCCATCTTATCTCCCCTCCT
CCGCTTGTTGCCAACTTGACACTTCTCGCACCACGAAGACGTCCAGCCGG
CTCTTTTTTTACCGGCGTCCATCGCCGTTCGTTGGCGTGTTGGCGACTAG
ACTTGAAAGGTCGTCGCACGCAGCGCAGATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig85518:223..654+

>mRNA_S-dermatodea_contig85518.16717.1 ID=mRNA_S-dermatodea_contig85518.16717.1|Name=mRNA_S-dermatodea_contig85518.16717.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at S-dermatodea_contig85518:223..654+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGCGACGGAAACGGGCAAGGGAGCAGCGCGGACGATGAGGAAAAA
GCGGCGGAGATTTCCCCTTGCGCCTGACAGGGGTGAACAAAACAAAATCA
TCGCGCGCGAGAATTTCACGCACCGCAACGCACGTGTGCAGCGAGCAAGC
AGACAGAAAGGGAGGAAGGGAGGAAAGAATGAAGAGAGAGAGAGAGAGAG
ACGGAGGGCATATACATACCATCTCCTACGCCACCGCCGCAAGCAACCGC
TTCGGCGGATGCCGGCGCCCTTCTACGAGAGCCATCTTATCTCCCCTCCT
CCGCTTGTTGCCAACTTGACACTTCTCGCACCACGAAGACGTCCAGCCGG
CTCTTTTTTTACCGGCGTCCATCGCCGTTCGTTGGCGTGTTGGCGACTAG
ACTTGAAAGGTCGTCGCACGCAGCGCAGATAACAGGTGGCGACGGAAACG
GGCAAGGGAGCAGCGCGGACGATGAGGAAAAAGCGGCGGAGATTTCCCCT
TGCGCCTGACAGGGGTGAACAAAACAAAATCATCGCGCGCGAGAATTTCA
CGCACCGCAACGCACGTGTGCAGCGAGCAAGCAGACAGAAAGGGAGGAAG
GGAGGAAAGAATGAAGAGAGAGAGAGAGAGAGACGGAGGGCATATACATA
CCATCTCCTACGCCACCGCCGCAAGCAACCGCTTCGGCGGATGCCGGCGC
CCTTCTACGAGAGCCATCTTATCTCCCCTCCTCCGCTTGTTGCCAACTTG
ACACTTCTCGCACCACGAAGACGTCCAGCCGGCTCTTTTTTTACCGGCGT
CCATCGCCGTTCGTTGGCGTGTTGGCGACTAGACTTGAAAGGTCGTCGCA
CGCAGCGCAGATAA
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