mRNA_S-dermatodea_contig85510.16716.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85510.16716.1
Unique NamemRNA_S-dermatodea_contig85510.16716.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig85510.16716.1 vs. uniprot
Match: D8LJP6_ECTSI (Zn-finger (Ran-binding)-3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP6_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 9.130e-30
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 VYLPTLLSPSACYKVPIAVGYTCLAVGKVGHFTALVGVEGELRHLPLVDEHGDDLPVR 174
            VYLPTL+ P  CYK+PIAVGYTC+AVGKVGHFTALVGV+ ELRHLPLVDEHGDDLP+R
Sbjct:   64 VYLPTLVDPDVCYKLPIAVGYTCVAVGKVGHFTALVGVDRELRHLPLVDEHGDDLPIR 121
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BLAST of mRNA_S-dermatodea_contig85510.16716.1 vs. uniprot
Match: A0A6H5JBZ3_9PHAE (OTU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ3_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.810e-26
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 VYLPTLLSPSACYKVPIAVGYTCLAVGKVGHFTALVGVEGELRHLPLVDEHGDDLPVR 174
            VYLPTL+ P  CYK+PIAVGYTC+ VGKVGHFTALVGV+GELRHLPLVDEHGD LP+R
Sbjct:  165 VYLPTLVDPDVCYKLPIAVGYTCVTVGKVGHFTALVGVDGELRHLPLVDEHGDGLPIR 222
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BLAST of mRNA_S-dermatodea_contig85510.16716.1 vs. uniprot
Match: D7G8I7_ECTSI (OTU domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I7_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 6.470e-16
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 VYLPTLLSPSACYKVPIAVGYTCLAVGKVGHFTALVGVEGELRHLPLVDEHGDDLPVR 174
            +YLPTL     CYK  IAV YTC  VG+ GHF+ LVG+  +L++LPLVDEHG +LPVR
Sbjct:  223 IYLPTLQHQDKCYKSAIAVAYTCPVVGRAGHFSPLVGMSKQLKYLPLVDEHGKNLPVR 280
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85510.16716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJP6_ECTSI9.130e-3084.48Zn-finger (Ran-binding)-3 n=1 Tax=Ectocarpus silic... [more]
A0A6H5JBZ3_9PHAE2.810e-2682.76OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G8I7_ECTSI6.470e-1660.34OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85510contigS-dermatodea_contig85510:88..264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue5.9e-22
Seed eggNOG ortholog2880.D8LJP6
Preferred nameZRANB1
KEGG koko:K11860,ko:K11862
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009653,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0016043,GO:0016477,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019941,GO:0021551,GO:0022603,GO:0022604,GO:0023051,GO:0023056,GO:0030111,GO:0030163,GO:0030177,GO:0031593,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0035523,GO:0036211,GO:0036459,GO:0040011,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051603,GO:0051674,GO:0060322,GO:0060828,GO:0065007,GO:0070011,GO:0070013,GO:0070530,GO:0070536,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0071947,GO:0090263,GO:0101005,GO:0140030,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1990168
EggNOG free text desc.protein deubiquitination involved in ubiquitin-dependent protein catabolic process
EggNOG OGsKOG4345@1,KOG4345@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925351.1957624-CDS-S-dermatodea_contig85510:87..2641622925351.1957624-CDS-S-dermatodea_contig85510:87..264Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85510 88..264 +
1694079874.6247063-CDS-S-dermatodea_contig85510:87..2641694079874.6247063-CDS-S-dermatodea_contig85510:87..264Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85510 88..264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85510.16716.1prot_S-dermatodea_contig85510.16716.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85510 88..264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85510.16716.1

>prot_S-dermatodea_contig85510.16716.1 ID=prot_S-dermatodea_contig85510.16716.1|Name=mRNA_S-dermatodea_contig85510.16716.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=59bp
VYLPTLLSPSACYKVPIAVGYTCLAVGKVGHFTALVGVEGELRHLPLVDE
HGDDLPVR*
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mRNA from alignment at S-dermatodea_contig85510:88..264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85510.16716.1 ID=mRNA_S-dermatodea_contig85510.16716.1|Name=mRNA_S-dermatodea_contig85510.16716.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at S-dermatodea_contig85510:88..264+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTATACCTACCGACGCTTCTGTCCCCAAGCGCGTGCTACAAAGTGCCCAT
CGCGGTCGGTTACACCTGCCTAGCCGTGGGCAAGGTGGGCCACTTTACGG
CTCTGGTGGGGGTCGAAGGAGAGCTGCGGCATCTCCCCCTGGTGGATGAG
CATGGGGACGATCTGCCTGTCAGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig85510:88..264+

>mRNA_S-dermatodea_contig85510.16716.1 ID=mRNA_S-dermatodea_contig85510.16716.1|Name=mRNA_S-dermatodea_contig85510.16716.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at S-dermatodea_contig85510:88..264+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTATACCTACCGACGCTTCTGTCCCCAAGCGCGTGCTACAAAGTGCCCAT
CGCGGTCGGTTACACCTGCCTAGCCGTGGGCAAGGTGGGCCACTTTACGG
CTCTGGTGGGGGTCGAAGGAGAGCTGCGGCATCTCCCCCTGGTGGATGAG
CATGGGGACGATCTGCCTGTCAGGTGAGTATACCTACCGACGCTTCTGTC
CCCAAGCGCGTGCTACAAAGTGCCCATCGCGGTCGGTTACACCTGCCTAG
CCGTGGGCAAGGTGGGCCACTTTACGGCTCTGGTGGGGGTCGAAGGAGAG
CTGCGGCATCTCCCCCTGGTGGATGAGCATGGGGACGATCTGCCTGTCAG
GTGA
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