mRNA_S-dermatodea_contig853.16700.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig853.16700.1 vs. uniprot
Match: D7G5P0_ECTSI (SHSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P0_ECTSI) HSP 1 Score: 144 bits (364), Expect = 6.620e-40 Identity = 90/166 (54.22%), Postives = 113/166 (68.07%), Query Frame = 1
Query: 1 RAVARELSAGTS-TNTPRHEVLETPDAVIVTVDLPGCKKHDVDAQISEDSAIKTLKITAVRKKSRTAD----HPSAAGESSASP------------------DSAESSESPATPPFTEESFELSFQIGEGIDVSGVRGKLEDGVLTLVLPRVAPEPPAQPIEIPID 429
+ VA ELS T+ +P +EVLETPDA + VDLPGCKK DVDAQ+SEDS KTL ITAVRKK R AD PS+ ++S S ++A+ + P+ F+EESF+LSF++GE IDVS +RG LEDGVLTLVLP++APEPPA+PI+IPID
Sbjct: 89 KKVACELSDPTTEARSPPYEVLETPDAATLIVDLPGCKKEDVDAQVSEDSGTKTLTITAVRKKPRQADGDARSPSSPPDTSGSXXXXXXXXXXXXXXXXAPHEAAKDTPEPSLSSFSEESFKLSFRVGEDIDVSVIRGGLEDGVLTLVLPKLAPEPPAEPIDIPID 254
BLAST of mRNA_S-dermatodea_contig853.16700.1 vs. uniprot
Match: A0A1G8YWX8_9RHOB (HSP20 family protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1G8YWX8_9RHOB) HSP 1 Score: 52.0 bits (123), Expect = 1.140e-5 Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = 1
Query: 43 TPRHEVLETPDAVIVTVDLPGCKKHDVDAQISEDSAIKTLKITAVRKKSRTADHPSAAGESSASPDSAESSESPATPPFTEE---SFELSFQIGEGIDVSGVRGKLEDGVLTLVLPRVAPEPPA 405
TP E T DA ++ ++LPG + D+D I+ ++ + T+K GE + E E T F+E +F SF++ D + V+ +L+DGVLT+ +PRV PEPPA
Sbjct: 30 TPASEAASTEDAYVIKIELPGVDEKDID--ITVENGVVTVK-----------------GEKKS-----EKEEKGETWYFSERQYGAFARSFRLPADADEAKVQAELKDGVLTITVPRVQPEPPA 129
BLAST of mRNA_S-dermatodea_contig853.16700.1 vs. uniprot
Match: A0A5K1CZB9_9MAGN (Uncharacterized protein (Fragment) n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1CZB9_9MAGN) HSP 1 Score: 51.6 bits (122), Expect = 2.100e-5 Identity = 47/141 (33.33%), Postives = 68/141 (48.23%), Query Frame = 1
Query: 1 RAVARELSAGTSTNTPRHEVLETPDAVIVTVDLPGCKKHDVDAQISEDSAIKTLKITAVRKKSRTADHPSAAGESSASPDSAESSESPATPPFTEESFELSFQIGEGIDVSGVRGKLEDGVLTLVLPRVA-PEPPAQPIEI 420
RA A E SA +T + ETPDA + VDLPG KK +V ++ E K LKI+ R + +S E +E + F F++ E + V V+ +EDGVLT+ +P+V P+P + IEI
Sbjct: 37 RAFASETSALANTQI---DWKETPDAHVFKVDLPGLKKEEVKVELEEG---KVLKISGERSR-----------------ESEEKNEKWHRVERSSGKFLRRFRLPENVMVDQVKAAMEDGVLTVTVPKVPEPKPEIKSIEI 154
BLAST of mRNA_S-dermatodea_contig853.16700.1 vs. uniprot
Match: UPI000D1D1112 (17.6 kDa class I heat shock protein-like n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1D1112) HSP 1 Score: 50.8 bits (120), Expect = 3.720e-5 Identity = 42/134 (31.34%), Postives = 67/134 (50.00%), Query Frame = 1
Query: 1 RAVARELSAGTSTNTPRHEVLETPDAVIVTVDLPGCKKHDVDAQISEDSAIKTLKITAVRKKSRTADHPSAAGESSASPDSAESSESPATPPFTEESFELSFQIGEGIDVSGVRGKLEDGVLTLVLPRVA-PEP 399
+ VAR+ SA +T R + LETPDA + DLPG K DV + +TL+I+ RK A+ ++ + SF F++ E +V G++ ++E+GVLT+ +P+VA P+P
Sbjct: 33 KQVARDASAAANT---RVDWLETPDAHVFKADLPGLSKEDVKITVEHG---RTLQISGERKMHE-----------------AQKTDKWHRVERSYGSFMRKFRLPENANVDGIKAQVENGVLTVTVPKVAKPQP 143
BLAST of mRNA_S-dermatodea_contig853.16700.1 vs. uniprot
Match: A0A6A2ZP59_HIBSY (22.0 kDa class IV heat shock protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZP59_HIBSY) HSP 1 Score: 51.2 bits (121), Expect = 4.320e-5 Identity = 37/132 (28.03%), Postives = 64/132 (48.48%), Query Frame = 1
Query: 7 VARELSAGTSTNTPRHEVLETPDAVIVTVDLPGCKKHDVDAQISEDSAIKTLKITAVRKKS--RTADHPSAAGESSASPDSAESSESPATPPFTEESFELSFQIGEGIDVSGVRGKLEDGVLTLVLPRVAPE 396
+A E + + R + E P+ +TVD+PG KK ++ ++ E+ + L+++ RK+ + DH S F F++ E +D+ GV+ KLEDGVLTL LP+++P+
Sbjct: 48 LALEKDESVALSPARVDWKERPEGHTITVDVPGLKKEELKIEVEEN---RVLRVSGERKREEEKKGDHWHRVERSYGK-------------------FWRQFKLPESVDLDGVKAKLEDGVLTLSLPKLSPD 157
BLAST of mRNA_S-dermatodea_contig853.16700.1 vs. uniprot
Match: C5Y7T5_SORBI (Uncharacterized protein n=2 Tax=Sorghum bicolor TaxID=4558 RepID=C5Y7T5_SORBI) HSP 1 Score: 51.2 bits (121), Expect = 5.480e-5 Identity = 38/122 (31.15%), Postives = 59/122 (48.36%), Query Frame = 1
Query: 64 ETPDAVIVTVDLPGCKKHDVDAQISEDSAIKTLKITAVRKKSRTADHPSAAGESSASPDSAESSESPATPPFTEESFELSFQIGEGIDVSGVRGKLEDGVLTLVLPRVAPEPPAQPIEIPID 429
ETPDA ++TVD+PG ++ DV ++ E+S + L+++ R+ D + E F F++ G DV V +LEDGVLT+ +P+VA +P I ID
Sbjct: 86 ETPDAHVITVDVPGVRREDVKVEVEENSRV--LRVSGERRA-----------------DEEKEGERWHRAERAAGRFWRRFRMPAGADVDRVSARLEDGVLTVTMPKVAGHRGREPRVISID 188
BLAST of mRNA_S-dermatodea_contig853.16700.1 vs. uniprot
Match: Q9ZSY1_FUNHY (Cytosolic I small heat shock protein HSP17.2IB n=1 Tax=Funaria hygrometrica TaxID=29583 RepID=Q9ZSY1_FUNHY) HSP 1 Score: 50.1 bits (118), Expect = 7.670e-5 Identity = 44/141 (31.21%), Postives = 70/141 (49.65%), Query Frame = 1
Query: 1 RAVARELSAGTSTNTPRHEVLETPDAVIVTVDLPGCKKHDVDAQISEDSAIKTLKITAVRKKSRTADHPSAAGESSASPDSAESSESPATPPFTEESFELSFQIGEGIDVSGVRGKLEDGVLTLVLPRVA-PEPPAQPIEI 420
R +A ++ A ST R + ETP+A I DLPG K +V Q+ E +TL+I RKK + + S++ + SF F++ EG + V+ +++DGVLT+ +P+V P+P + IEI
Sbjct: 35 RQLASDVQAVAST---RIDWRETPEAHIFKADLPGLTKEEVKVQVLEG---RTLEICGERKK-----------------EEVQKSDTWHRMERAQGSFMRRFRLPEGTNTDDVKAQVQDGVLTVTVPKVQKPKPQVRQIEI 152 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig853.16700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig853.16700.1 >prot_S-dermatodea_contig853.16700.1 ID=prot_S-dermatodea_contig853.16700.1|Name=mRNA_S-dermatodea_contig853.16700.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=143bp RAVARELSAGTSTNTPRHEVLETPDAVIVTVDLPGCKKHDVDAQISEDSAback to top mRNA from alignment at S-dermatodea_contig853:11765..12193+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig853.16700.1 ID=mRNA_S-dermatodea_contig853.16700.1|Name=mRNA_S-dermatodea_contig853.16700.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=429bp|location=Sequence derived from alignment at S-dermatodea_contig853:11765..12193+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig853:11765..12193+ >mRNA_S-dermatodea_contig853.16700.1 ID=mRNA_S-dermatodea_contig853.16700.1|Name=mRNA_S-dermatodea_contig853.16700.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at S-dermatodea_contig853:11765..12193+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |