mRNA_S-dermatodea_contig852.16690.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig852.16690.1
Unique NamemRNA_S-dermatodea_contig852.16690.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig852.16690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig852contigS-dermatodea_contig852:10007..10670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size664
Cds size333
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925348.9817624-UTR-S-dermatodea_contig852:10006..103371622925348.9817624-UTR-S-dermatodea_contig852:10006..10337Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig852 10007..10337 +
1694079873.0953507-UTR-S-dermatodea_contig852:10006..103371694079873.0953507-UTR-S-dermatodea_contig852:10006..10337Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig852 10007..10337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925348.9953861-CDS-S-dermatodea_contig852:10337..106701622925348.9953861-CDS-S-dermatodea_contig852:10337..10670Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig852 10338..10670 +
1694079873.1051443-CDS-S-dermatodea_contig852:10337..106701694079873.1051443-CDS-S-dermatodea_contig852:10337..10670Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig852 10338..10670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig852.16690.1prot_S-dermatodea_contig852.16690.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig852 10338..10670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig852.16690.1

>prot_S-dermatodea_contig852.16690.1 ID=prot_S-dermatodea_contig852.16690.1|Name=mRNA_S-dermatodea_contig852.16690.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
MIQRLCLAAGASSPRVRSEARRVQLHEVLPMRRYVGGAGCQAKTRILVHS
ALGEHNFCGNVWSSFHRFRHWPPGRREAGQRGRSTGMTSRRGNACEPGTP
TLSQRCIILS*
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mRNA from alignment at S-dermatodea_contig852:10007..10670+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig852.16690.1 ID=mRNA_S-dermatodea_contig852.16690.1|Name=mRNA_S-dermatodea_contig852.16690.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=664bp|location=Sequence derived from alignment at S-dermatodea_contig852:10007..10670+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AATCGCACTGATGAGGAAATACCTTGCCCGAAAAAAACAGCCGGCTTAAC
CCCAAAGAACGCGCTGAGAGCCTTTTGCTTTGGGCGCCCGAACGCACGGG
CCGGGATGCATAGGACAGGGACATCGAGCGGGGGGTGGGGCACGGGGCAT
GGTGTGCGCATATGCATGCAAATAACCTGACGTATGTGTGATGAAAAAAA
TACACTCGAGTCGCCCAGCAAAAAGGGAGCGGGCGACGGGTAATGATAAT
GAAACAAACGAGCCTTTAATTAAAGTGGCACAAATCCAAATCAAACGCTA
GACGACAATCATCTGGTCTAATCCCACCCCTATGATTCAGAGACTTTGCC
TCGCCGCTGGCGCCTCGAGTCCCCGAGTAAGATCAGAAGCTCGCCGAGTC
CAACTCCATGAAGTGCTGCCCATGCGGAGGTACGTAGGCGGGGCTGGCTG
CCAGGCGAAAACTCGAATTTTGGTGCATTCGGCTTTGGGGGAGCACAATT
TTTGCGGCAATGTTTGGTCGTCGTTTCACCGTTTTCGTCATTGGCCGCCA
GGCCGGCGCGAGGCCGGCCAGCGAGGACGATCAACAGGGATGACGTCAAG
ACGCGGCAATGCATGTGAGCCCGGAACGCCGACATTGTCACAAAGATGTA
TAATATTATCATAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig852:10007..10670+

>mRNA_S-dermatodea_contig852.16690.1 ID=mRNA_S-dermatodea_contig852.16690.1|Name=mRNA_S-dermatodea_contig852.16690.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig852:10007..10670+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATTCAGAGACTTTGCCTCGCCGCTGGCGCCTCGAGTCCCCGAGTAAG
ATCAGAAGCTCGCCGAGTCCAACTCCATGAAGTGCTGCCCATGCGGAGGT
ACGTAGGCGGGGCTGGCTGCCAGGCGAAAACTCGAATTTTGGTGCATTCG
GCTTTGGGGGAGCACAATTTTTGCGGCAATGTTTGGTCGTCGTTTCACCG
TTTTCGTCATTGGCCGCCAGGCCGGCGCGAGGCCGGCCAGCGAGGACGAT
CAACAGGGATGACGTCAAGACGCGGCAATGCATGTGAGCCCGGAACGCCG
ACATTGTCACAAAGATGTATAATATTATCATAGATGATTCAGAGACTTTG
CCTCGCCGCTGGCGCCTCGAGTCCCCGAGTAAGATCAGAAGCTCGCCGAG
TCCAACTCCATGAAGTGCTGCCCATGCGGAGGTACGTAGGCGGGGCTGGC
TGCCAGGCGAAAACTCGAATTTTGGTGCATTCGGCTTTGGGGGAGCACAA
TTTTTGCGGCAATGTTTGGTCGTCGTTTCACCGTTTTCGTCATTGGCCGC
CAGGCCGGCGCGAGGCCGGCCAGCGAGGACGATCAACAGGGATGACGTCA
AGACGCGGCAATGCATGTGAGCCCGGAACGCCGACATTGTCACAAAGATG
TATAATATTATCATAG
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