mRNA_S-dermatodea_contig8490.16659.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8490.16659.1
Unique NamemRNA_S-dermatodea_contig8490.16659.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8490.16659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8490contigS-dermatodea_contig8490:8123..8905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size783
Cds size783
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925346.8707767-CDS-S-dermatodea_contig8490:8122..89051622925346.8707767-CDS-S-dermatodea_contig8490:8122..8905Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8490 8123..8905 +
1694079871.764026-CDS-S-dermatodea_contig8490:8122..89051694079871.764026-CDS-S-dermatodea_contig8490:8122..8905Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8490 8123..8905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8490.16659.1prot_S-dermatodea_contig8490.16659.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8490 8123..8905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8490.16659.1

>prot_S-dermatodea_contig8490.16659.1 ID=prot_S-dermatodea_contig8490.16659.1|Name=mRNA_S-dermatodea_contig8490.16659.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=261bp
MGTNSSNSIFSSYFSSPLLSGLRSRAPTHSTRPHTHNLHHFCLAQASQAT
QHTTAVSYTCQAAKLSGRVTSHDQAPQQRRKEICSRLPRGISGATHHRPD
IMTQPDGLSPRASRQHAQQSTSSACVTPTSCSRPGRFFEQEQHQQSTAGA
MLKPKRPRSPRRPTHQAKAISTRPLISEQHNHSGNRVSSRVLGIIAAVAV
IVPLLYVRSSGHGAEPIESRTRPSLRALSSAGAKHRCDARRSWGGVASES
RAQCAGVLPSS
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mRNA from alignment at S-dermatodea_contig8490:8123..8905+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8490.16659.1 ID=mRNA_S-dermatodea_contig8490.16659.1|Name=mRNA_S-dermatodea_contig8490.16659.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=783bp|location=Sequence derived from alignment at S-dermatodea_contig8490:8123..8905+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGAACAAACAGCAGCAACAGCATCTTCTCGAGCTATTTTAGCTCGCC
CCTTCTGTCTGGTCTCAGGAGCCGCGCCCCCACACACTCCACCCGCCCAC
ACACACACAACCTCCACCACTTCTGCCTTGCCCAAGCCTCCCAAGCAACG
CAACACACAACTGCAGTGAGCTATACTTGCCAAGCAGCGAAGCTTTCCGG
AAGAGTTACCAGCCACGACCAAGCTCCCCAGCAAAGGCGCAAGGAAATTT
GCTCGCGATTGCCTAGAGGAATCAGCGGAGCGACGCACCACAGGCCAGAC
ATCATGACCCAGCCAGACGGACTCAGCCCTAGGGCTTCCAGGCAGCACGC
CCAGCAGAGCACCAGCTCAGCCTGCGTTACGCCGACCTCCTGCTCTAGAC
CTGGGCGCTTCTTCGAGCAAGAGCAGCACCAGCAGAGCACCGCAGGAGCG
ATGCTCAAGCCGAAGCGCCCTAGATCCCCGAGGAGGCCTACCCACCAGGC
CAAGGCGATCAGCACGAGGCCGCTCATCTCCGAGCAGCACAATCACAGCG
GGAACCGCGTGAGCTCCCGCGTCTTGGGCATCATCGCTGCGGTGGCTGTC
ATCGTCCCCCTCCTGTACGTACGGAGCAGCGGACACGGTGCGGAGCCTAT
CGAGTCCAGGACCAGGCCATCTCTGAGAGCACTGTCGTCTGCTGGCGCGA
AGCATCGGTGCGATGCCCGCAGGAGCTGGGGGGGGGTTGCCTCGGAGAGC
CGTGCGCAGTGCGCCGGCGTGCTCCCGTCGTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8490:8123..8905+

>mRNA_S-dermatodea_contig8490.16659.1 ID=mRNA_S-dermatodea_contig8490.16659.1|Name=mRNA_S-dermatodea_contig8490.16659.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at S-dermatodea_contig8490:8123..8905+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGAACAAACAGCAGCAACAGCATCTTCTCGAGCTATTTTAGCTCGCC
CCTTCTGTCTGGTCTCAGGAGCCGCGCCCCCACACACTCCACCCGCCCAC
ACACACACAACCTCCACCACTTCTGCCTTGCCCAAGCCTCCCAAGCAACG
CAACACACAACTGCAGTGAGCTATACTTGCCAAGCAGCGAAGCTTTCCGG
AAGAGTTACCAGCCACGACCAAGCTCCCCAGCAAAGGCGCAAGGAAATTT
GCTCGCGATTGCCTAGAGGAATCAGCGGAGCGACGCACCACAGGCCAGAC
ATCATGACCCAGCCAGACGGACTCAGCCCTAGGGCTTCCAGGCAGCACGC
CCAGCAGAGCACCAGCTCAGCCTGCGTTACGCCGACCTCCTGCTCTAGAC
CTGGGCGCTTCTTCGAGCAAGAGCAGCACCAGCAGAGCACCGCAGGAGCG
ATGCTCAAGCCGAAGCGCCCTAGATCCCCGAGGAGGCCTACCCACCAGGC
CAAGGCGATCAGCACGAGGCCGCTCATCTCCGAGCAGCACAATCACAGCG
GGAACCGCGTGAGCTCCCGCGTCTTGGGCATCATCGCTGCGGTGGCTGTC
ATCGTCCCCCTCCTGTACGTACGGAGCAGCGGACACGGTGCGGAGCCTAT
CGAGTCCAGGACCAGGCCATCTCTGAGAGCACTGTCGTCTGCTGGCGCGA
AGCATCGGTGCGATGCCCGCAGGAGCTGGGGGGGGGTTGCCTCGGAGAGC
CGTGCGCAGTGCGCCGGCGTGCTCCCGTCGTCCATGGGAACAAACAGCAG
CAACAGCATCTTCTCGAGCTATTTTAGCTCGCCCCTTCTGTCTGGTCTCA
GGAGCCGCGCCCCCACACACTCCACCCGCCCACACACACACAACCTCCAC
CACTTCTGCCTTGCCCAAGCCTCCCAAGCAACGCAACACACAACTGCAGT
GAGCTATACTTGCCAAGCAGCGAAGCTTTCCGGAAGAGTTACCAGCCACG
ACCAAGCTCCCCAGCAAAGGCGCAAGGAAATTTGCTCGCGATTGCCTAGA
GGAATCAGCGGAGCGACGCACCACAGGCCAGACATCATGACCCAGCCAGA
CGGACTCAGCCCTAGGGCTTCCAGGCAGCACGCCCAGCAGAGCACCAGCT
CAGCCTGCGTTACGCCGACCTCCTGCTCTAGACCTGGGCGCTTCTTCGAG
CAAGAGCAGCACCAGCAGAGCACCGCAGGAGCGATGCTCAAGCCGAAGCG
CCCTAGATCCCCGAGGAGGCCTACCCACCAGGCCAAGGCGATCAGCACGA
GGCCGCTCATCTCCGAGCAGCACAATCACAGCGGGAACCGCGTGAGCTCC
CGCGTCTTGGGCATCATCGCTGCGGTGGCTGTCATCGTCCCCCTCCTGTA
CGTACGGAGCAGCGGACACGGTGCGGAGCCTATCGAGTCCAGGACCAGGC
CATCTCTGAGAGCACTGTCGTCTGCTGGCGCGAAGCATCGGTGCGATGCC
CGCAGGAGCTGGGGGGGGGTTGCCTCGGAGAGCCGTGCGCAGTGCGCCGG
CGTGCTCCCGTCGTCC
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