mRNA_S-dermatodea_contig84624.16633.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84624.16633.1
Unique NamemRNA_S-dermatodea_contig84624.16633.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig84624.16633.1 vs. uniprot
Match: A0A6H5JJM4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.640e-16
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:  175 VKTANNPTEACVIMTVGKNQDGYWTCDRLCSQLEVAITISESSHRSHRQCVMIFDNSTGH 354
            +KTAN+P  A VIMTVGK  DGYWT DR+C+QL  AI + E S+  HRQ V IFDNSTGH
Sbjct:  488 LKTANDPRTAAVIMTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGH 547
[Close]
BLAST of mRNA_S-dermatodea_contig84624.16633.1 vs. uniprot
Match: A0A6H5K550_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K550_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.180e-15
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:  175 VKTANNPTEACVIMTVGKNQDGYWTCDRLCSQLEVAITISESSHRSHRQCVMIFDNSTGH 354
            +KTAN+P  A VIMTVGK QDGYWT DR+C+QL  A+   E ++  HRQ V IFDNSTGH
Sbjct:  540 LKTANDPRTAVVIMTVGKQQDGYWTSDRMCAQLPAALATFELTNGPHRQGVFIFDNSTGH 599
[Close]
BLAST of mRNA_S-dermatodea_contig84624.16633.1 vs. uniprot
Match: A0A6H5JRU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU6_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.500e-14
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 VLVLQFHDESTWKENDDGGRSWENALKGAAIKKKGEGRGVHASDMIGVENG 153
            VL L FHDE+T KENDDGG  W +  KGAAIKKKGEGR VH SD+IGV+ G
Sbjct:  113 VLALYFHDETTAKENDDGGCQWMDGQKGAAIKKKGEGRAVHVSDIIGVDRG 163
[Close]
BLAST of mRNA_S-dermatodea_contig84624.16633.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 9.180e-14
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 VLVLQFHDESTWKENDDGGRSWENALKGAAIKKKGEGRGVHASDMIGVENG 153
            VL L FHDE+T KENDDGG  W +  KGAAIKKKGEGR VH SD+IGV+ G
Sbjct:  373 VLALYFHDETTAKENDDGGCQWMDGQKGAAIKKKGEGRAVHVSDIIGVDRG 423
[Close]
BLAST of mRNA_S-dermatodea_contig84624.16633.1 vs. uniprot
Match: A0A6H5K527_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K527_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 9.240e-14
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 VLVLQFHDESTWKENDDGGRSWENALKGAAIKKKGEGRGVHASDMIGVENG 153
            VL L FHDE+T KENDDGG  W +  KGAAIKKKGEGR VH SD+IGV+ G
Sbjct:  827 VLALYFHDETTAKENDDGGCQWMDGQKGAAIKKKGEGRAVHVSDIIGVDRG 877
[Close]
BLAST of mRNA_S-dermatodea_contig84624.16633.1 vs. uniprot
Match: A0A6H5KDG4_9PHAE (Uncharacterized protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDG4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 9.380e-14
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 VLVLQFHDESTWKENDDGGRSWENALKGAAIKKKGEGRGVHASDMIGVENG 153
            VL L FHDE+T KENDDGG  W +  KGAAIKKKGEGR VH SD+IGV+ G
Sbjct:  860 VLALYFHDETTAKENDDGGCQWMDGQKGAAIKKKGEGRAVHVSDIIGVDRG 910
[Close]
BLAST of mRNA_S-dermatodea_contig84624.16633.1 vs. uniprot
Match: A0A6H5KH16_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH16_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.060e-13
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 VLVLQFHDESTWKENDDGGRSWENALKGAAIKKKGEGRGVHASDMIGVENG 153
            VL L FHDE+T KENDDG   W + LKGAAIKKKGEGR  H SD+IGV+ G
Sbjct:   36 VLALYFHDETTAKENDDGSNQWVSVLKGAAIKKKGEGRAAHISDIIGVDRG 86
[Close]
BLAST of mRNA_S-dermatodea_contig84624.16633.1 vs. uniprot
Match: A0A6H5L669_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L669_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.680e-13
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 VLVLQFHDESTWKENDDGGRSWENALKGAAIKKKGEGRGVHASDMIGVENG 153
            VL L FHDE+T KENDDG   W + LKGAAIKKKGEGR  H SD+IGV+ G
Sbjct:  209 VLALYFHDETTAKENDDGSNQWVSVLKGAAIKKKGEGRAAHISDIIGVDRG 259
[Close]
BLAST of mRNA_S-dermatodea_contig84624.16633.1 vs. uniprot
Match: A0A6H5JR89_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR89_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.700e-13
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 VLVLQFHDESTWKENDDGGRSWENALKGAAIKKKGEGRGVHASDMIGVENG 153
            VL L FHDE+T KENDDG   W + LKGAAIKKKGEGR  H SD+IGV+ G
Sbjct:  658 VLALYFHDETTAKENDDGSNQWVSVLKGAAIKKKGEGRAAHISDIIGVDRG 708
[Close]
BLAST of mRNA_S-dermatodea_contig84624.16633.1 vs. uniprot
Match: A0A6H5JJ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ42_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 6.040e-13
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 VLVLQFHDESTWKENDDGGRSWENALKGAAIKKKGEGRGVHASDMIGVENG 153
            V+ L FHDE+T KENDDGG  W +  KGAAIKKKGEGR VH SD+IGV+ G
Sbjct:  784 VMSLYFHDETTAKENDDGGCQWMSIEKGAAIKKKGEGRAVHVSDIIGVDRG 834
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84624.16633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJM4_9PHAE4.640e-1665.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K550_9PHAE1.180e-1563.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRU6_9PHAE8.500e-1470.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K659_9PHAE9.180e-1470.59Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K527_9PHAE9.240e-1470.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDG4_9PHAE9.380e-1470.59Uncharacterized protein n=6 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH16_9PHAE1.060e-1368.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L669_9PHAE1.680e-1368.63Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR89_9PHAE1.700e-1368.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JJ42_9PHAE6.040e-1368.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84624contigS-dermatodea_contig84624:147..701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.8e-09
Seed eggNOG ortholog653948.CCA26098
EggNOG OGs29JY0@1,2RT6R@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_004900.1
Exons2
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925345.116811-CDS-S-dermatodea_contig84624:146..3101622925345.116811-CDS-S-dermatodea_contig84624:146..310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84624 147..310 +
1694079870.463949-CDS-S-dermatodea_contig84624:146..3101694079870.463949-CDS-S-dermatodea_contig84624:146..310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84624 147..310 +
1622925345.1289647-CDS-S-dermatodea_contig84624:511..7011622925345.1289647-CDS-S-dermatodea_contig84624:511..701Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84624 512..701 +
1694079870.4766452-CDS-S-dermatodea_contig84624:511..7011694079870.4766452-CDS-S-dermatodea_contig84624:511..701Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84624 512..701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84624.16633.1prot_S-dermatodea_contig84624.16633.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84624 147..701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84624.16633.1

>prot_S-dermatodea_contig84624.16633.1 ID=prot_S-dermatodea_contig84624.16633.1|Name=mRNA_S-dermatodea_contig84624.16633.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp
VLVLQFHDESTWKENDDGGRSWENALKGAAIKKKGEGRGVHASDMIGVEN
GRLQLAVNVKTANNPTEACVIMTVGKNQDGYWTCDRLCSQLEVAITISES
SHRSHRQCVMIFDNSTGH
back to top

mRNA from alignment at S-dermatodea_contig84624:147..701+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84624.16633.1 ID=mRNA_S-dermatodea_contig84624.16633.1|Name=mRNA_S-dermatodea_contig84624.16633.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=555bp|location=Sequence derived from alignment at S-dermatodea_contig84624:147..701+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTCTGGTGCTGCAGTTTCACGACGAAAGCACGTGGAAGGAGAACGATGA
CGGCGGGAGGAGTTGGGAAAATGCTCTCAAAGGAGCGGCCATAAAGAAGA
AGGGAGAAGGCCGTGGCGTCCATGCATCTGACATGATCGGCGTGGAAAAC
GGGCGGTTGCAGCTGTCTGAGGAGTACTGGGGTATGCTTCAAGAAGACAA
GAACGTCGAAGTACGAACGGTGGTTGCCGAGAACGGGCGTGTGCACCATA
TGCAGTACTACTCCCGTTCAGGGATATACTTCGGCCGGCAGGAAGGTGAA
GGAACGGACGGTCGCGCGGTAAAATATGTGCAGGATGCAGTGGCCCTGCT
GAAGGGCAAAGCCAGCGCCGTGAACGTGAAAACTGCAAACAATCCCACGG
AGGCTTGTGTGATCATGACTGTGGGCAAAAATCAGGACGGCTACTGGACT
TGCGACCGCTTGTGCTCTCAACTCGAGGTGGCGATAACGATTTCCGAATC
GTCACATAGATCACACCGCCAGTGCGTCATGATCTTCGACAACTCGACAG
GCCAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig84624:147..701+

>mRNA_S-dermatodea_contig84624.16633.1 ID=mRNA_S-dermatodea_contig84624.16633.1|Name=mRNA_S-dermatodea_contig84624.16633.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig84624:147..701+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTCTGGTGCTGCAGTTTCACGACGAAAGCACGTGGAAGGAGAACGATGA
CGGCGGGAGGAGTTGGGAAAATGCTCTCAAAGGAGCGGCCATAAAGAAGA
AGGGAGAAGGCCGTGGCGTCCATGCATCTGACATGATCGGCGTGGAAAAC
GGGCGGTTGCAGCTGTTCTGGTGCTGCAGTTTCACGACGAAAGCACGTGG
AAGGAGAACGATGACGGCGGGAGGAGTTGGGAAAATGCTCTCAAAGGAGC
GGCCATAAAGAAGAAGGGAGAAGGCCGTGGCGTCCATGCATCTGACATGA
TCGGCGTGGAAAACGGGCGGTTGCAGCTCGCCGTGAACGTGAAAACTGCA
AACAATCCCACGGAGGCTTGTGTGATCATGACTGTGGGCAAAAATCAGGA
CGGCTACTGGACTTGCGACCGCTTGTGCTCTCAACTCGAGGTGGCGATAA
CGATTTCCGAATCGTCACATAGATCACACCGCCAGTGCGTCATGATCTTC
GACAACTCGACAGGCCACCGCCGTGAACGTGAAAACTGCAAACAATCCCA
CGGAGGCTTGTGTGATCATGACTGTGGGCAAAAATCAGGACGGCTACTGG
ACTTGCGACCGCTTGTGCTCTCAACTCGAGGTGGCGATAACGATTTCCGA
ATCGTCACATAGATCACACCGCCAGTGCGTCATGATCTTCGACAACTCGA
CAGGCCAC
back to top