mRNA_S-dermatodea_contig8438.16607.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8438.16607.1
Unique NamemRNA_S-dermatodea_contig8438.16607.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: D7FNE7_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE7_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 9.630e-34
Identity = 66/84 (78.57%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:   13 GGSKGGGSEFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSLDG 264
            GG +G  SEFGAARGVDFRGVSFVLNVDFPPT SSYTHR+GRTARGGASGTALSL++ KD+ QC+TLQ +Q+SQP+L  PSLDG
Sbjct:  475 GGHRGEDSEFGAARGVDFRGVSFVLNVDFPPTASSYTHRVGRTARGGASGTALSLVLAKDEKQCRTLQRVQSSQPSLAAPSLDG 558
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BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: A0A6H5KX88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX88_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.890e-27
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:   34 SEFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQ 225
            SEFGAARGVDFRGVSFVLNVDFPPT SSYTHR+GRTARGGASGTALSL++ KD+ QC+TLQ +Q
Sbjct:  539 SEFGAARGVDFRGVSFVLNVDFPPTASSYTHRVGRTARGGASGTALSLVLAKDEKQCRTLQRVQ 602
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BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: A0A6V2D6B0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2D6B0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.290e-25
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:   34 SEFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSLDGAGGNPERESLVASMG 309
            SE+G +RG+DFRGVSFV+NVDFPP   SYTHRIGRTARGGASG ALSL+  + + Q + LQ +Q SQP LP  S+   GG P    L  + G
Sbjct:  118 SEYGVSRGLDFRGVSFVVNVDFPPNSKSYTHRIGRTARGGASGVALSLVEAESEEQLEALQQVQESQPPLPSGSVGVGGGGPSNGDLRTATG 209
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BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: A0A7S4VQY4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VQY4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.050e-25
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:   34 SEFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSLDGAGGNPERESLVASMG 309
            SE+G +RG+DFRGVSFV+NVDFPP   SYTHRIGRTARGGASG ALSL+  + + Q + LQ +Q SQP LP  S+   GG P    L  + G
Sbjct:  388 SEYGVSRGLDFRGVSFVVNVDFPPNSKSYTHRIGRTARGGASGVALSLVEAESEEQLEALQQVQESQPPLPSGSVGVGGGGPSNGDLRTATG 479
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BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: A0A835ZDE1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 8.180e-23
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:   10 AGGSKGGGSEFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALP 246
            AGG KG  +E+G ARG+DFRGV FV+NVDFPP+  SYTHR+GRTARGGASGTALSL+  +   +   L  +QASQPALP
Sbjct:  373 AGGPKGD-AEYGVARGIDFRGVKFVMNVDFPPSARSYTHRVGRTARGGASGTALSLLCERAPAEVAALAEVQASQPALP 450
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BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: A0A7S2VYS2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYS2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.880e-22
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:   34 SEFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSLDGAGGN 276
            SE+G +RG+DFRGVSFV+NVDFPP+  SYTHRIGRTARGGASG ALSL+ + D  Q   L  +Q SQP LP   L G  GN
Sbjct:  370 SEYGVSRGLDFRGVSFVVNVDFPPSCQSYTHRIGRTARGGASGVALSLVNMDDTEQESMLSRVQESQPPLP---LAGTSGN 447
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BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: A0A4D9D2A0_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2A0_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.870e-21
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:   37 EFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSLD 261
            E+G  RG+DFR V+FV+NVDFP +  +YTHRIGRTARGGA+GTALSL+  +D  + + L  +QASQPALPP   D
Sbjct:   15 EYGVHRGIDFRAVNFVVNVDFPRSARAYTHRIGRTARGGANGTALSLLNKEDAREQEVLAAVQASQPALPPSEGD 89
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BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: A0A1Z5KBW1_FISSO (ATP-dependent RNA helicase DDX56/DBP9 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBW1_FISSO)

HSP 1 Score: 96.7 bits (239), Expect = 4.640e-21
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:   34 SEFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSL 258
            SE+G ARG+DFR VSFV+NVDFPP+  SY HR+GRTARGGA G ALSL+  K   + QTL  +Q  QPALP   L
Sbjct:  362 SEYGVARGLDFRNVSFVVNVDFPPSAKSYAHRVGRTARGGAKGVALSLVDNKSAEEFQTLLAVQDDQPALPAAEL 436
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BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: W7TVX7_9STRA (Putative atp-dependent rna helicase ddx56 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVX7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.630e-20
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:   37 EFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSLD 261
            E+G  RG+DFR V+FV+NVDFP +  +YTHRIGRTARGGA+GTALSL+   D  + + L  +QASQPALPP   D
Sbjct:  435 EYGVHRGIDFRAVNFVVNVDFPRSARAYTHRIGRTARGGANGTALSLLNKDDAREQEVLAAVQASQPALPPSEGD 509
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BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: K0QZR5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZR5_THAOC)

HSP 1 Score: 94.7 bits (234), Expect = 2.210e-20
Identity = 52/94 (55.32%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:   37 EFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSLDGAGGNPERESLVASMGAEG 318
            E+GA+RG+DFRGVSFV+N D PP P SYTHRIGRTARGGASG AL+L+      + +TL  IQ SQP+    S  G+G    RE+     G EG
Sbjct:  384 EYGASRGLDFRGVSFVVNFDMPPNPESYTHRIGRTARGGASGVALTLVDGSVAEEAETLLDIQESQPSR---SAAGSGDGELREAADDGAGMEG 474
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNE7_ECTSI9.630e-3478.57DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KX88_9PHAE1.890e-2784.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V2D6B0_9STRA1.290e-2558.70Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4VQY4_9STRA3.050e-2558.70Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A835ZDE1_9STRA8.180e-2365.82DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S2VYS2_9STRA3.880e-2264.20Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A4D9D2A0_9STRA1.870e-2161.33Helicase C-terminal domain-containing protein n=1 ... [more]
A0A1Z5KBW1_FISSO4.640e-2162.67ATP-dependent RNA helicase DDX56/DBP9 n=2 Tax=Fist... [more]
W7TVX7_9STRA1.630e-2061.33Putative atp-dependent rna helicase ddx56 n=1 Tax=... [more]
K0QZR5_THAOC2.210e-2055.32Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8438contigS-dermatodea_contig8438:3926..5663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue5.4e-29
Seed eggNOG ortholog2880.D7FNE7
Preferred nameDDX56
KEGG koko:K14810
GOsGO:0000463,GO:0000470,GO:0003674,GO:0003676,GO:0003678,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0010720,GO:0010975,GO:0010976,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022613,GO:0030154,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033677,GO:0033680,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046483,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051276,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0120035,GO:0140097,GO:0140098,GO:1901360,GO:1901363,GO:2000026
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0346@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-22_001460.1
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons3
Model size332
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8438.16607.1prot_S-dermatodea_contig8438.16607.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8438 3926..5661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925343.0818608-CDS-S-dermatodea_contig8438:3925..40071622925343.0818608-CDS-S-dermatodea_contig8438:3925..4007Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8438 3926..4007 +
1694079869.0561588-CDS-S-dermatodea_contig8438:3925..40071694079869.0561588-CDS-S-dermatodea_contig8438:3925..4007Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8438 3926..4007 +
1622925343.0932024-CDS-S-dermatodea_contig8438:4711..48541622925343.0932024-CDS-S-dermatodea_contig8438:4711..4854Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8438 4712..4854 +
1694079869.066986-CDS-S-dermatodea_contig8438:4711..48541694079869.066986-CDS-S-dermatodea_contig8438:4711..4854Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8438 4712..4854 +
1622925343.105985-CDS-S-dermatodea_contig8438:5556..56611622925343.105985-CDS-S-dermatodea_contig8438:5556..5661Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8438 5557..5661 +
1694079869.0749335-CDS-S-dermatodea_contig8438:5556..56611694079869.0749335-CDS-S-dermatodea_contig8438:5556..5661Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8438 5557..5661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8438.16607.1

>prot_S-dermatodea_contig8438.16607.1 ID=prot_S-dermatodea_contig8438.16607.1|Name=mRNA_S-dermatodea_contig8438.16607.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp
SKGAGGSKGGGSEFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARG
GASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSLDGAGGNPERESLVA
SMGAEGAAER
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mRNA from alignment at S-dermatodea_contig8438:3926..5663+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8438.16607.1 ID=mRNA_S-dermatodea_contig8438.16607.1|Name=mRNA_S-dermatodea_contig8438.16607.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1738bp|location=Sequence derived from alignment at S-dermatodea_contig8438:3926..5663+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTAAAGGGGCGGGTGGCTCCAAGGGTGGGGGGTCGGAGTTCGGCGCCGC
TCGGGGCGTTGATTTCCGCGGGGTTTCGTTTGGTGAGAGGCGTGTTTTGG
GCGCGGGCGGTCGGGGGTGTATGACTCGCTATGATAGCAGGACGAGGAGA
AGGCTTAAATAAAAAAACAAAGAAGAATCACTGTTGCAAGCAGATGAAGG
GATACAGTACCTGCATGGACCAATGGGCGAAGGGGGCGTGGTTGGAGGTC
AATTTCAGGGGTGGAGATTTTGACCTCCGGGAACGTAAACGGAGATTTAG
GGAGGTAGGCGAGGAGGAGGAAGGCGAGGACAAGTTTAAATGCGATTGCG
GCTCGGAAGGGTGTGAGGACCGTGTCCATGTAGTGGCGGCATGCTCGTTT
CATGAAAAGGAGAGAGATGTATACATGGCTGAGCTGGAAAAAATCGAAAG
ATGTGACAGATATACTTTCGAAGCATGGGGCGGCCAGACGAAGGCGGTAG
CTATACTGCGGGATAAGAAGTGGCCTGAGAAGGCGAGAAGTGAGGTAGAC
ATGATAGGAAACACATTGTTGCGCCACCTTTGGGAGAGTAGGAGGGGACG
ATTAGATGGCCATCGGCGATCGATCGATCGTGTGGGAACAATGCTCCGTC
CTCTCGAGGACGCGTGGTCAATGGTCTAACAGCTAAGGGATGCAAAACAT
GAGTAGCCTCCCCCCCCCTCACCCCCCCTCACCCCCGAATCCTCATCCGG
CTGTCTGCCTTCATCCGACGGCTGTTTTGGTGACAGTGCTGAACGTCGAT
TTTCCCCCTACCCCGTCGAGCTACACCCACCGAATCGGGAGGACTGCAAG
GGGGGGCGCGAGCGGTACCGCTCTCAGCCTCATCGTCGTCAAGGACAAGA
CGCAGTGCCAGACATTGCAGACAATCCAGGTGCGTGCGTGCGTTGGGTTG
GGACGGGGTGGTTGGGGGGGGGGTACGTATGTTAAACGCATGTCGTATCC
AAACGGGCATATAGACCACGCGTCCCAACAATGCCGGGACGGAGAGGAAC
GGTATGCTGGGTGTGTTTTCGCCGGCCAGGCTGCATCTCACGAGGATGAT
ATGTACCAGCTGCTGGTCATCACCGTTGCGTTTGCGACGCCAAAAGATAT
GCCATGGGTTGATTGGACATACCGGGCAACCAGATGTTGCACGTCCAGTA
GGCGTGACTATACTCCAAGTACCCCAAGGGGAGGGGGGGGGGGGGCACTC
CATTCCCAGAGTTGAGTTTTGGTTGTATTGCTTTCTGGTTTATTTTGTTG
GGGCATCATACTTGAACTGTTTTTTTACATTTGTTTGGTCCTGATTACTC
TGTGTGCCTCTGTAGCTGTGAGTCACATATACACACACCCGTGCACTACT
CCAGCACTCCCTTGTTCAGCGTACCGCAATGGTTCCGGAATAGCCGCGCA
CTACCATAATACTGCATGCACAACACAGCTACTCGCATTCGCAGTACAGT
ACTGTAGTATCATACTAAACACTGGTCGGCATCGTAGTACCCTCGAATGA
AACGCAATCGGCCACGGCGACAGTACACGGAGAAGATGCGAACACCTGCT
TACTCGACCACGCCCATCGACTAAACCGCAGGCCTCTCAGCCAGCCCTTC
CCCCCCCATCTCTCGACGGAGCTGGCGGTAACCCGGAGCGTGAGTCCCTC
GTGGCCTCAATGGGAGCGGAGGGGGCGGCGGAGAGGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8438:3926..5663+

>mRNA_S-dermatodea_contig8438.16607.1 ID=mRNA_S-dermatodea_contig8438.16607.1|Name=mRNA_S-dermatodea_contig8438.16607.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig8438:3926..5663+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTAAAGGGGCGGGTGGCTCCAAGGGTGGGGGGTCGGAGTTCGGCGCCGC
TCGGGGCGTTGATTTCCGCGGGGTTTCGTTTGTCTAAAGGGGCGGGTGGC
TCCAAGGGTGGGGGGTCGGAGTTCGGCGCCGCTCGGGGCGTTGATTTCCG
CGGGGTTTCGTTTGTGCTGAACGTCGATTTTCCCCCTACCCCGTCGAGCT
ACACCCACCGAATCGGGAGGACTGCAAGGGGGGGCGCGAGCGGTACCGCT
CTCAGCCTCATCGTCGTCAAGGACAAGACGCAGTGCCAGACATTGCAGAC
AATCCAGTGCTGAACGTCGATTTTCCCCCTACCCCGTCGAGCTACACCCA
CCGAATCGGGAGGACTGCAAGGGGGGGCGCGAGCGGTACCGCTCTCAGCC
TCATCGTCGTCAAGGACAAGACGCAGTGCCAGACATTGCAGACAATCCAG
GCCTCTCAGCCAGCCCTTCCCCCCCCATCTCTCGACGGAGCTGGCGGTAA
CCCGGAGCGTGAGTCCCTCGTGGCCTCAATGGGAGCGGAGGGGGCGGCGG
AGAGGGCCTCTCAGCCAGCCCTTCCCCCCCCATCTCTCGACGGAGCTGGC
GGTAACCCGGAGCGTGAGTCCCTCGTGGCCTCAATGGGAGCGGAGGGGGC
GGCGGAGAGG
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