mRNA_S-dermatodea_contig84370.16606.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84370.16606.1
Unique NamemRNA_S-dermatodea_contig84370.16606.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig84370.16606.1 vs. uniprot
Match: A0A6H5KZB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZB6_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.530e-29
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:   13 QPLGDMATRDWRIFMEDFDIRVKGGKAPLPLRFWEEGNLPSSVMEAIRELGYETPSPIQRQ 195
            +PL +MA RDWRIF EDFDIRVKGGKAPLPLRFWEEGNLPSSVMEAIRELGYE PSPIQRQ
Sbjct:  562 KPLAEMAERDWRIFREDFDIRVKGGKAPLPLRFWEEGNLPSSVMEAIRELGYEKPSPIQRQ 622
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BLAST of mRNA_S-dermatodea_contig84370.16606.1 vs. uniprot
Match: D8LDQ4_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ4_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 7.230e-29
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:   13 QPLGDMATRDWRIFMEDFDIRVKGGKAPLPLRFWEEGNLPSSVMEAIRELGYETPSPIQRQ 195
            +PL +MA RDWRIF EDFDIRVKGGKAPLPLRFWEEG+LPSSVMEAIRELGYE PSPIQRQ
Sbjct:  545 KPLAEMAERDWRIFREDFDIRVKGGKAPLPLRFWEEGHLPSSVMEAIRELGYEKPSPIQRQ 605
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BLAST of mRNA_S-dermatodea_contig84370.16606.1 vs. uniprot
Match: A0A835YKD8_9STRA (Putative DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKD8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.830e-24
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:   13 QPLGDMATRDWRIFMEDFDIRVKGGKAPLPLRFWEEGNLPSSVMEAIRELGYETPSPIQRQ 195
            +PL +MA RDWRIF EDFDIRVKGGKAPLPLR WEEG L +++MEAI ELGY+ PSPIQRQ
Sbjct:  348 KPLSEMAERDWRIFREDFDIRVKGGKAPLPLRNWEEGKLAATIMEAIEELGYKEPSPIQRQ 408
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BLAST of mRNA_S-dermatodea_contig84370.16606.1 vs. uniprot
Match: A0A7S3US55_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3US55_HETAK)

HSP 1 Score: 95.5 bits (236), Expect = 1.590e-21
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:   28 MATRDWRIFMEDFDIRVKGGKAPLPLRFWEEGNLPSSVMEAIRELGYETPSPIQRQ 195
            M  RDWRI  ED+DIRVKGG+APLPLR WEEGN+P+ VM+AI+ELG+E PSPIQRQ
Sbjct:   28 MQPRDWRILREDYDIRVKGGRAPLPLRKWEEGNIPAPVMDAIKELGFEKPSPIQRQ 83
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BLAST of mRNA_S-dermatodea_contig84370.16606.1 vs. uniprot
Match: A0A7S3H980_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H980_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 6.000e-20
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:   19 LGDMATRDWRIFMEDFDIRVKGGKAPLPLRFWEEGNLPSSVMEAIRELGYETPSPIQRQ 195
            L DM  RDWRIF EDFDIR++GG+A LPLRFW E N P +V++AI   GYE PSPIQRQ
Sbjct:  236 LADMTERDWRIFREDFDIRIQGGRATLPLRFWNEANFPPAVVKAIEAAGYEKPSPIQRQ 294
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BLAST of mRNA_S-dermatodea_contig84370.16606.1 vs. uniprot
Match: F0Y5I0_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5I0_AURAN)

HSP 1 Score: 90.5 bits (223), Expect = 1.100e-19
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:   19 LGDMATRDWRIFMEDFDIRVKGGKAPLPLRFWEEGNLPSSVMEAIRELGYETPSPIQRQ 195
            LGDM  RDWRI  EDFDIR++GGKAPLPLRFW E +L   ++ AIR+ GY+ PSPIQRQ
Sbjct:  147 LGDMTDRDWRIMKEDFDIRIRGGKAPLPLRFWGEADLGEPLLMAIRDAGYKEPSPIQRQ 205
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BLAST of mRNA_S-dermatodea_contig84370.16606.1 vs. uniprot
Match: A0A1I7T8J3_9PELO (RNA helicase n=1 Tax=Caenorhabditis tropicalis TaxID=1561998 RepID=A0A1I7T8J3_9PELO)

HSP 1 Score: 89.4 bits (220), Expect = 1.590e-19
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 HPRLQPLGDMATRDWRIFMEDFDIRVKGGKAPLPLRFWEEGNLPSSVMEAIRELGYETPSPIQRQ 195
            H R++ L +M  RDWRIF EDF+I +KGGK P PLR WEE   P  V++A+RE+GY  P+PIQRQ
Sbjct:  264 HWRMKKLSEMTDRDWRIFREDFNISIKGGKVPRPLRNWEEAGFPEEVLQAVREIGYLEPTPIQRQ 328
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BLAST of mRNA_S-dermatodea_contig84370.16606.1 vs. uniprot
Match: A0A5S6QMI8_TRIMR (RNA helicase n=2 Tax=Trichuris TaxID=36086 RepID=A0A5S6QMI8_TRIMR)

HSP 1 Score: 89.4 bits (220), Expect = 2.850e-19
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 HPRLQPLGDMATRDWRIFMEDFDIRVKGGKAPLPLRFWEEGNLPSSVMEAIRELGYETPSPIQRQ 195
            H R + L +MA RDWRIF ED++I +KGG  P PLR WE+GN P  V++ IR++GYE P+PIQRQ
Sbjct:  268 HWRQKSLEEMAERDWRIFREDYNISIKGGNVPKPLRSWEDGNFPQEVLDVIRKVGYEEPTPIQRQ 332
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BLAST of mRNA_S-dermatodea_contig84370.16606.1 vs. uniprot
Match: A0A0B1RVX9_OESDE (RNA helicase (Fragment) n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1RVX9_OESDE)

HSP 1 Score: 86.7 bits (213), Expect = 4.650e-19
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 HPRLQPLGDMATRDWRIFMEDFDIRVKGGKAPLPLRFWEEGNLPSSVMEAIRELGYETPSPIQRQ 195
            H +++PL +M  RDWRIF EDF+I +KGG+ P P+R WEE  LP  V +AI+++GY+ P+PIQRQ
Sbjct:  101 HWKMKPLEEMTERDWRIFREDFNISIKGGRVPKPIRSWEECGLPDEVYQAIQKVGYKEPTPIQRQ 165
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BLAST of mRNA_S-dermatodea_contig84370.16606.1 vs. uniprot
Match: A0A0D8Y3C6_DICVI (RNA helicase n=1 Tax=Dictyocaulus viviparus TaxID=29172 RepID=A0A0D8Y3C6_DICVI)

HSP 1 Score: 87.0 bits (214), Expect = 6.290e-19
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 HPRLQPLGDMATRDWRIFMEDFDIRVKGGKAPLPLRFWEEGNLPSSVMEAIRELGYETPSPIQRQ 195
            H +++PL +M  RDWRIF EDF+I +KGG+ P PLR WEE  LP  V +AI+++GY  P+PIQRQ
Sbjct:  121 HWKMKPLEEMTERDWRIFREDFNISIKGGRVPKPLRAWEECGLPEEVYQAIQKVGYSEPTPIQRQ 185
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84370.16606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZB6_9PHAE1.530e-2990.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDQ4_ECTSI7.230e-2988.52DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835YKD8_9STRA2.830e-2477.05Putative DEAD box helicase n=1 Tax=Tribonema minus... [more]
A0A7S3US55_HETAK1.590e-2175.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3H980_9STRA6.000e-2067.80Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
F0Y5I0_AURAN1.100e-1967.80Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A1I7T8J3_9PELO1.590e-1958.46RNA helicase n=1 Tax=Caenorhabditis tropicalis Tax... [more]
A0A5S6QMI8_TRIMR2.850e-1958.46RNA helicase n=2 Tax=Trichuris TaxID=36086 RepID=A... [more]
A0A0B1RVX9_OESDE4.650e-1955.38RNA helicase (Fragment) n=1 Tax=Oesophagostomum de... [more]
A0A0D8Y3C6_DICVI6.290e-1956.92RNA helicase n=1 Tax=Dictyocaulus viviparus TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84370contigS-dermatodea_contig84370:366..560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.1e-22
Seed eggNOG ortholog2880.D8LDQ4
Preferred namePRP28
KEGG koko:K12858
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000384,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005682,GO:0005730,GO:0005737,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035770,GO:0036464,GO:0042623,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0045495,GO:0046483,GO:0051179,GO:0060293,GO:0065003,GO:0070013,GO:0070035,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0333@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-19_001540.1
Exons1
Model size195
Cds size168
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925343.0339952-UTR-S-dermatodea_contig84370:365..3921622925343.0339952-UTR-S-dermatodea_contig84370:365..392Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig84370 366..392 +
1694079869.029959-UTR-S-dermatodea_contig84370:365..3921694079869.029959-UTR-S-dermatodea_contig84370:365..392Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig84370 366..392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925343.0476632-CDS-S-dermatodea_contig84370:392..5601622925343.0476632-CDS-S-dermatodea_contig84370:392..560Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84370 393..560 +
1694079869.0428586-CDS-S-dermatodea_contig84370:392..5601694079869.0428586-CDS-S-dermatodea_contig84370:392..560Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84370 393..560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84370.16606.1prot_S-dermatodea_contig84370.16606.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84370 393..560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84370.16606.1

>prot_S-dermatodea_contig84370.16606.1 ID=prot_S-dermatodea_contig84370.16606.1|Name=mRNA_S-dermatodea_contig84370.16606.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=56bp
MATRDWRIFMEDFDIRVKGGKAPLPLRFWEEGNLPSSVMEAIRELGYETP
SPIQRQ
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mRNA from alignment at S-dermatodea_contig84370:366..560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84370.16606.1 ID=mRNA_S-dermatodea_contig84370.16606.1|Name=mRNA_S-dermatodea_contig84370.16606.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at S-dermatodea_contig84370:366..560+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACCCGCGTTTGCAGCCGCTCGGTGACATGGCCACCCGCGACTGGAGAAT
TTTCATGGAAGATTTCGACATTAGGGTCAAGGGCGGGAAGGCGCCGCTGC
CGCTGAGGTTCTGGGAAGAGGGAAACCTGCCGTCTAGCGTAATGGAGGCC
ATCCGAGAGCTTGGCTACGAAACCCCCAGCCCCATCCAGAGACAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig84370:366..560+

>mRNA_S-dermatodea_contig84370.16606.1 ID=mRNA_S-dermatodea_contig84370.16606.1|Name=mRNA_S-dermatodea_contig84370.16606.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at S-dermatodea_contig84370:366..560+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCACCCGCGACTGGAGAATTTTCATGGAAGATTTCGACATTAGGGT
CAAGGGCGGGAAGGCGCCGCTGCCGCTGAGGTTCTGGGAAGAGGGAAACC
TGCCGTCTAGCGTAATGGAGGCCATCCGAGAGCTTGGCTACGAAACCCCC
AGCCCCATCCAGAGACAGATGGCCACCCGCGACTGGAGAATTTTCATGGA
AGATTTCGACATTAGGGTCAAGGGCGGGAAGGCGCCGCTGCCGCTGAGGT
TCTGGGAAGAGGGAAACCTGCCGTCTAGCGTAATGGAGGCCATCCGAGAG
CTTGGCTACGAAACCCCCAGCCCCATCCAGAGACAG
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