prot_S-dermatodea_contig10228.166.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10228.166.1
Unique Nameprot_S-dermatodea_contig10228.166.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length289
Homology
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BLAST of mRNA_S-dermatodea_contig10228.166.1 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 3.170e-102
Identity = 180/274 (65.69%), Postives = 198/274 (72.26%), Query Frame = 0 
Query:    1 MTPAKGDDLQHPVTDVEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESKSQRAVLVFVEAEGAHSALQANGRDILGANCTVSLASSMPTLNDGLDRENVSDQPEMGAGGVEGRSMTTAEWIKNMFAQGMVYTRLFDEKLGVSQTAKALAAKVQQM----DETHNVSGRVAAAALDAQAKAREVDTKLKVSETASKWVQMTRESTGKALDSHPRVAAGVSQAGDAFSKVVSDVRGFAQQAMGQPQ----PAQPENPDAAAAPT 266
            M P+KG DL+HPVTD+EAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEES++QRAVLVF +  GA SALQANGRDILGANC+VSLASSMP LNDGLDR+NVSDQP    GG+EGR++TTAEWIK +FAQGMVYTRLFDEKLGVS TAK++AAKVQ                                     ETASKW    +EST KAL+S+PRVAAGV QAGDA   +V  V G A QAMGQPQ    P  P  P A  A T
Sbjct:   12 MKPSKGQDLEHPVTDLEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAA-VGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAMGQPQEMAGPVPPVPPSAVPANT 284
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BLAST of mRNA_S-dermatodea_contig10228.166.1 vs. uniprot
Match: A0A6H5JE69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE69_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.660e-30
Identity = 69/131 (52.67%), Postives = 95/131 (72.52%), Query Frame = 0 
Query:    4 AKGDDLQHPVTDVEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESKSQRAVLVFVEAEGAHSALQANGRDILGANCTVSLASSMPTLNDGLDRENVSDQPEMGAGGVEGRSMTTAEWIK 134
            A+ D+L   VT+ EA RS+LVQGLP+LD + TE+++V+VFS YG  SKLLLQT  +S++QR V+VF ++ GA +ALQ NGRDILGA C+VSL+S++   N+ LD+  V    E     + GR+ TTAEWI+
Sbjct:  296 AESDELPE-VTEQEAARSVLVQGLPVLDLQPTEAALVEVFSVYGRASKLLLQTIHQSQTQRVVVVFKQSAGATAALQQNGRDILGARCSVSLSSTLAASNESLDQNGVRWLAERAENALNGRTPTTAEWIQ 425
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10228.166.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7Z1_ECTSI3.170e-10265.69RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JE69_9PHAE1.660e-3052.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 21..94
e-value: 0.0033
score: 26.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 30..90
e-value: 8.4E-6
score: 25.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 20..98
score: 11.111
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 10..101
e-value: 9.5E-8
score: 34.1
NoneNo IPR availablePANTHERPTHR32343FAMILY NOT NAMEDcoord: 34..250
NoneNo IPR availablePANTHERPTHR32343:SF10SI:CH211-195B21.5coord: 34..250
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 15..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10228contigS-dermatodea_contig10228:765..6265 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10228.166.1mRNA_S-dermatodea_contig10228.166.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10228 738..8137 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10228.166.1 ID=prot_S-dermatodea_contig10228.166.1|Name=mRNA_S-dermatodea_contig10228.166.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=289bp
MTPAKGDDLQHPVTDVEAVRSILVQGLPLLDQELTESSIVQVFSAYGEIS
KLLLQTNEESKSQRAVLVFVEAEGAHSALQANGRDILGANCTVSLASSMP
TLNDGLDRENVSDQPEMGAGGVEGRSMTTAEWIKNMFAQGMVYTRLFDEK
LGVSQTAKALAAKVQQMDETHNVSGRVAAAALDAQAKAREVDTKLKVSET
ASKWVQMTRESTGKALDSHPRVAAGVSQAGDAFSKVVSDVRGFAQQAMGQ
PQPAQPENPDAAAAPTGEVDSAAAAAAASSETSTTRSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf