mRNA_S-dermatodea_contig83698.16543.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83698.16543.1
Unique NamemRNA_S-dermatodea_contig83698.16543.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig83698.16543.1 vs. uniprot
Match: D8LI14_ECTSI (Calcium-dependent protein kinase, isoform 2 (CDPK 2) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI14_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 4.400e-24
Identity = 48/56 (85.71%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:   13 QEFLAATIDRNLFIREDNVRRAFQYFDVEGSGSITLANLIDIFGSEAHAREIVGEL 180
            QEFLAATIDRN+FIREDNVRRAFQ+FD+EGSGSITLANL+ IFGSE HAREIVG++
Sbjct:  300 QEFLAATIDRNVFIREDNVRRAFQHFDIEGSGSITLANLVSIFGSEDHAREIVGDI 355
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BLAST of mRNA_S-dermatodea_contig83698.16543.1 vs. uniprot
Match: A0A6H5L236_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L236_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.230e-23
Identity = 47/56 (83.93%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:   13 QEFLAATIDRNLFIREDNVRRAFQYFDVEGSGSITLANLIDIFGSEAHAREIVGEL 180
            +EFLAATIDRN+FIREDNVRRAFQ+FD+EGSGSITLANL+ IFGSE HAREIVG++
Sbjct:  426 KEFLAATIDRNVFIREDNVRRAFQHFDIEGSGSITLANLVSIFGSEDHAREIVGDI 481
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BLAST of mRNA_S-dermatodea_contig83698.16543.1 vs. uniprot
Match: A0A836CG63_9STRA (Calcium-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG63_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.130e-16
Identity = 36/56 (64.29%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:   13 QEFLAATIDRNLFIREDNVRRAFQYFDVEGSGSITLANLIDIFGSEAHAREIVGEL 180
            +EFLAAT+DR++F+RE+N+R  F YFD+EG+G IT+ NLI IFGSE HAREI+G++
Sbjct:  411 REFLAATMDRSVFVREENMRSGFAYFDLEGAGKITVDNLIKIFGSEEHAREIMGDV 466
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BLAST of mRNA_S-dermatodea_contig83698.16543.1 vs. uniprot
Match: A0A6V1S6L4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S6L4_HETAK)

HSP 1 Score: 74.7 bits (182), Expect = 3.170e-14
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   13 QEFLAATIDRNLFIREDNVRRAFQYFDVEGSGSITLANLIDIFGSEAHAREIV 171
            QEFLAA +DRN+FIRE+N+R AFQYFD +G G I  A+L+DIFGS  HA E V
Sbjct:  425 QEFLAAVVDRNVFIREENIRVAFQYFDKQGRGHIQPADLVDIFGSVQHAEEAV 477
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BLAST of mRNA_S-dermatodea_contig83698.16543.1 vs. uniprot
Match: A0A812RCN9_SYMMI (Calmodulin (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RCN9_SYMMI)

HSP 1 Score: 74.3 bits (181), Expect = 4.130e-14
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   16 EFLAATIDRNLFIREDNVRRAFQYFDVEGSGSITLANLIDIFGSEAHAREIVGEL 180
            EFLAAT+D N  IRE+N+ RAFQ FD +GSGS+T+  L+ I GSE HARE+ GE+
Sbjct:  368 EFLAATMDMNHAIREENILRAFQQFDTDGSGSLTIPELVAIMGSEEHAREVAGEI 422
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BLAST of mRNA_S-dermatodea_contig83698.16543.1 vs. uniprot
Match: A0A812UKM4_SYMMI (Calmodulin (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UKM4_SYMMI)

HSP 1 Score: 73.2 bits (178), Expect = 9.560e-14
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   16 EFLAATIDRNLFIREDNVRRAFQYFDVEGSGSITLANLIDIFGSEAHAREIVGEL 180
            EFLAAT+D N  IRE+N+ RAFQ FD  GSGS+T+ +L+ I GSE HARE+ GE+
Sbjct:  282 EFLAATMDMNHAIREENILRAFQQFDQNGSGSLTIPDLVAIMGSEEHAREVAGEI 336
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BLAST of mRNA_S-dermatodea_contig83698.16543.1 vs. uniprot
Match: A0A7S4D8Z4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8Z4_HETAK)

HSP 1 Score: 69.7 bits (169), Expect = 1.660e-12
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   13 QEFLAATIDRNLFIREDNVRRAFQYFDVEGSGSITLANLIDIFGSEAHAREIVGEL 180
            +EFLAA +DRN+FIRE+N++ AF +FD  G G+I    L+ IFGS  HARE VGE+
Sbjct:  241 EEFLAAVVDRNVFIREENIQIAFNHFDTAGRGAIRPQELVAIFGSLEHAREAVGEI 296
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BLAST of mRNA_S-dermatodea_contig83698.16543.1 vs. uniprot
Match: A0A7S2REM8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REM8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.650e-11
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   16 EFLAATIDRNLFIREDNVRRAFQYFDVEGSGSITLANLIDIFGSEAHAREIVGEL 180
            EFLAAT+ RN+FIRE+N+R AF  FD + SG I+  NL+ IFGS  HA E +G+L
Sbjct:  482 EFLAATVSRNVFIREENIRLAFDCFDEDHSGYISYENLVHIFGSLQHADECLGDL 536
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BLAST of mRNA_S-dermatodea_contig83698.16543.1 vs. uniprot
Match: F0Y8X1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8X1_AURAN)

HSP 1 Score: 65.5 bits (158), Expect = 5.740e-11
Identity = 28/54 (51.85%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:   16 EFLAATIDRNLFIREDNVRRAFQYFDVEGSGSITLANLIDIFGSEAHAREIVGE 177
            EFLAAT+ RNL+ ++DNV++ F   D++G+G IT+ANL++I GS+ HA E++ E
Sbjct:  421 EFLAATMQRNLYQKDDNVKKVFAQLDLDGTGCITVANLVEITGSKKHAMELLDE 474
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BLAST of mRNA_S-dermatodea_contig83698.16543.1 vs. uniprot
Match: W7T8G8_9STRA (Calcium-dependent protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T8G8_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 7.870e-11
Identity = 25/55 (45.45%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   16 EFLAATIDRNLFIREDNVRRAFQYFDVEGSGSITLANLIDIFGSEAHAREIVGEL 180
            EFLAAT++R++++R++++RRAFQ+FD +  G IT+ +L++  G+E +ARE++G++
Sbjct:  479 EFLAATMERSVYVRDEHIRRAFQHFDQDMDGHITVQDLVEALGTEENAREVLGDI 533
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83698.16543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI14_ECTSI4.400e-2485.71Calcium-dependent protein kinase, isoform 2 (CDPK ... [more]
A0A6H5L236_9PHAE3.230e-2383.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CG63_9STRA1.130e-1664.29Calcium-dependent protein kinase n=1 Tax=Tribonema... [more]
A0A6V1S6L4_HETAK3.170e-1466.04Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A812RCN9_SYMMI4.130e-1461.82Calmodulin (Fragment) n=1 Tax=Symbiodinium microad... [more]
A0A812UKM4_SYMMI9.560e-1461.82Calmodulin (Fragment) n=1 Tax=Symbiodinium microad... [more]
A0A7S4D8Z4_HETAK1.660e-1257.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2REM8_9STRA1.650e-1158.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0Y8X1_AURAN5.740e-1151.85Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
W7T8G8_9STRA7.870e-1145.45Calcium-dependent protein n=3 Tax=Monodopsidaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83698contigS-dermatodea_contig83698:397..576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue9.9e-09
Seed eggNOG ortholog44056.XP_009037159.1
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
GOsGO:0000165,GO:0000187,GO:0001817,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006468,GO:0006690,GO:0006691,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009931,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010857,GO:0015630,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032675,GO:0032680,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0035556,GO:0035924,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044351,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046777,GO:0048010,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051019,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0098657,GO:0140096,GO:1900034,GO:1901564,GO:1901568,GO:1901700,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903555
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925338.4074187-CDS-S-dermatodea_contig83698:396..5761622925338.4074187-CDS-S-dermatodea_contig83698:396..576Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83698 397..576 -
1694079865.5591464-CDS-S-dermatodea_contig83698:396..5761694079865.5591464-CDS-S-dermatodea_contig83698:396..576Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83698 397..576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83698.16543.1prot_S-dermatodea_contig83698.16543.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83698 397..576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83698.16543.1

>prot_S-dermatodea_contig83698.16543.1 ID=prot_S-dermatodea_contig83698.16543.1|Name=mRNA_S-dermatodea_contig83698.16543.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=60bp
KSNVQEFLAATIDRNLFIREDNVRRAFQYFDVEGSGSITLANLIDIFGSE
AHAREIVGEL
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mRNA from alignment at S-dermatodea_contig83698:397..576-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83698.16543.1 ID=mRNA_S-dermatodea_contig83698.16543.1|Name=mRNA_S-dermatodea_contig83698.16543.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at S-dermatodea_contig83698:397..576- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAATCGAACGTGCAGGAATTTCTGGCGGCGACGATCGACCGGAACCTTTT
CATCCGAGAAGATAATGTGCGCAGGGCGTTCCAGTACTTTGACGTGGAGG
GGTCCGGTAGCATAACGTTGGCGAACTTGATCGACATTTTCGGCAGCGAG
GCGCATGCGAGGGAAATCGTTGGTGAGTTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig83698:397..576-

>mRNA_S-dermatodea_contig83698.16543.1 ID=mRNA_S-dermatodea_contig83698.16543.1|Name=mRNA_S-dermatodea_contig83698.16543.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at S-dermatodea_contig83698:397..576- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAATCGAACGTGCAGGAATTTCTGGCGGCGACGATCGACCGGAACCTTTT
CATCCGAGAAGATAATGTGCGCAGGGCGTTCCAGTACTTTGACGTGGAGG
GGTCCGGTAGCATAACGTTGGCGAACTTGATCGACATTTTCGGCAGCGAG
GCGCATGCGAGGGAAATCGTTGGTGAGTTAAAATCGAACGTGCAGGAATT
TCTGGCGGCGACGATCGACCGGAACCTTTTCATCCGAGAAGATAATGTGC
GCAGGGCGTTCCAGTACTTTGACGTGGAGGGGTCCGGTAGCATAACGTTG
GCGAACTTGATCGACATTTTCGGCAGCGAGGCGCATGCGAGGGAAATCGT
TGGTGAGTTA
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