mRNA_S-dermatodea_contig8368.16542.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8368.16542.1 vs. uniprot
Match: D8LTD6_ECTSI (Protein kinase domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD6_ECTSI) HSP 1 Score: 317 bits (811), Expect = 1.110e-85 Identity = 434/1145 (37.90%), Postives = 530/1145 (46.29%), Query Frame = 2
Query: 179 MSWLDVSPKRQAARSKAMPGS----------TRTYGSGRLPTSSTRGAASRG-----LFRSQTGASVS----YGSTSVVLAATYEEEAKSPPAG-SISSRLSPGFDSSPSELAFSTNRSRDLDLGSPNDTSPTEDTA----KAGKTKKXXXXXXXXXTRTRTASSSGTKPNPAARGSSADPVVLRDEASAP--RRKEPAAGRKSRAARGATGSARLNVS-------VFGEEDETAVASEAERPQPSPTA----RRDRSPARRGAGRPERWGDRAAAAPTAARKPSPSLHSPLRPITNYSSEGDRSQRGSAKTRAARGDTSXXXXXXXXXXXXXXXXXXXXXXXXXXX---QDDDMDFSSKPDAKPDAQEDRRKGGRGELTAGGRRRKAGATRAAPTRGARVAARDRTLPAAVGGIEEYSSDSEGVGEGEEGADDMEELADGEVAPAERVPTPPPPLSPEGAYPISREVCLSLDSSVEGILVGDKRPRGGKRGARAVEDGAHRSSRSRHLSPNIPVSGGFANEAFSVLEEDESDLDDAIGELAPAADVMDTTARNASMSGTTRQGE--SLFHSAPHPAP---------AASATARSGPSAHHRRAFSATAFRAHPSVPSLSMTSSPALMLQRQKWRRASMSGTQAEAAAASAMAQAAVDYELAE--WGDDSPPAKLSRSLSLSXXXXXXXXXXXXXXCS------KVTRSSFRRRSRASSTSSPLPVLETSASMPTGGV----AELTASGSWSTRSVGSVGLSRADLR-KRRGST--------NAVEELRSRSSGEMSVVNGSVPLVRSHRMRGGWSQGGGERTVGDRPTSLPSDFV-LGETRAGDGNPPAAGMGRGDSGVGWVLRAPGAPLG-RYRSQSLASGKASLGLSRSRSDSTPGPSLGTGSAWVSRFASAEGSTSTDGQSSEQRPLDSEAFEEKPVLDPGSMGD--SHAQTPRASGAEGTSAAQARRAHGLSSVARRMDRLVIRSPDVETNAAQAQQAILGSPMGPE--------DVSASAAGTASAGTPARPRPFSLPTHLTPVGNWN-STTDRSRLSGIGASPTECFRDYLSGQQGQDEEEEEVSRIGVFFGGGVGRAAAAGAEATSSPDTNSPPGITFTRSAALGLPSPIAPPGLFG 3358
MSWL+ SPK Q +++K PGS TRTYGS R PTSS RG+A+ G LFR T A + YG T V L++ Y+E+ KSP S++SR SP DSSP L R DLDL SP D+ K XXXXXXXXX +P +G + P + +A AP +RK PAA RK+RAA S + G E V +E RP+ S ++ RR+RSP RRGAGRPERW DR +A R PS L SPLRPITNY+SEGDR R AK A+ + XXXXXXXXXXXXXXXXXXXXXXXXX +DD MDF+ R S N+ GF SV EE++S+LDDA V+D T ++ S P P P +A A A S S R A T +AH SPAL+ ++ RR + T E A A+AQA+ +LA WGDDSPPA+LSRSLSLS XX KVTRSS RRRSRA+STSSPLPVLE SASMPTGG+ A A ++ RS GSV A LR +RRGS + ++ R +SS E+S + + PL RSHRM ++ G R G RP SLP + G R G+ P A GD+G GWVLR+PGAP R RS+S A G A + +RSDS P S G G+A + S G S E DS +E + G + + AQTP+AS ++ +A RRAHGLSSVARRMDRL IRSP VET+AAQAQ I+ G + + S G S GTP+RPR SLP H TPVGN N + +RSRLSG G SPTECFRDYLSG G++EEE++ +G G + +SPPG+T TRS ALGLPSPI GLFG
Sbjct: 1 MSWLEGSPKHQGSKAKPAPGSSARGLWSSSTTRTYGSSRRPTSSLRGSAASGPKAGGLFRGHTPAGGAGGGQYGLTRVGLSSAYDEDPKSPLGDDSLASRASPELDSSPIVLTSFAKRGLDLDLESPGDSXXXXXXXXXXPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPTPKGEAGTPAMEEVDAPAPAPKRKVPAA-RKTRAAXXXXXXXXXXXSDSAVISEISGTGQEEGVVAEGGRPRASSSSQQSVRRERSPTRRGAGRPERWADRGGGGESAGRGPSSPLSSPLRPITNYTSEGDRPPRTKAKVAGAKTCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXWRDDGMDFT----------------------------------------------------------------------------------------------------------------------------------------------------RSASLNVGNGNGF-----SVEEENDSELDDA---------VIDATGDDSDXXXXXXXXXXXSSTDVIPRPKPPCPTTTTAGSAPAVASSTXSILKRAAPDPTDLKAHXXXXXXXXXXSPALVGLSRRPRREAQRVTHGEKRAP-ALAQASSVEDLARGGWGDDSPPARLSRSLSLSQTSAPSAWHGAAXXXXXXXXXXKVTRSSHRRRSRANSTSSPLPVLEMSASMPTGGIGLSDATAVAREDFTARSFGSV----ASLRHRRRGSLGGGSXXXGDGIKHARRKSSCEVSSGS-NAPLSRSHRMPS-FNHGNSLRNPG-RPVSLPQGIMERGSRRGGEEIPGEALSIGGDAGFGWVLRSPGAPPDDRRRSKSFAGG-ARPSATHARSDSNPVRSSGGGAAQYPPGLAGAASVDMYGLSGEWARRDS-GEQESGMFVAGDKDEEMAPAQTPQASPSDTGDSAAMRRAHGLSSVARRMDRLEIRSPAVETHAAQAQLEIMADSTGDNPGHGHSIPEATTSLGG--SDGTPSRPRISSLPAHYTPVGNSNVARNERSRLSGAGGSPTECFRDYLSGLHGKEEEEDDEELLGEAKHEGKAPKTPSAVAXXXXXXXHSPPGVTCTRSTALGLPSPILA-GLFG 969 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8368.16542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8368.16542.1 >prot_S-dermatodea_contig8368.16542.1 ID=prot_S-dermatodea_contig8368.16542.1|Name=mRNA_S-dermatodea_contig8368.16542.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=1060bp MSWLDVSPKRQAARSKAMPGSTRTYGSGRLPTSSTRGAASRGLFRSQTGAback to top mRNA from alignment at S-dermatodea_contig8368:1227..9020+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8368.16542.1 ID=mRNA_S-dermatodea_contig8368.16542.1|Name=mRNA_S-dermatodea_contig8368.16542.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7794bp|location=Sequence derived from alignment at S-dermatodea_contig8368:1227..9020+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8368:1227..9020+ >mRNA_S-dermatodea_contig8368.16542.1 ID=mRNA_S-dermatodea_contig8368.16542.1|Name=mRNA_S-dermatodea_contig8368.16542.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=6360bp|location=Sequence derived from alignment at S-dermatodea_contig8368:1227..9020+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |