mRNA_S-dermatodea_contig8355.16532.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8355.16532.1
Unique NamemRNA_S-dermatodea_contig8355.16532.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8355.16532.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 5.620e-48
Identity = 89/96 (92.71%), Postives = 92/96 (95.83%), Query Frame = 1
Query:  118 SELDRLTGKPRDEDVLLFAVAVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRARDTPASHKALMKGVNDNECVAAMIGDVKVSVAGLAQA 405
            SELDRLTGKPRDEDVLLFAV VCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSR+RDTPAS K LMKG+ DNECVAAMIGDVKV+VAGLAQA
Sbjct: 1250 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASQKGLMKGITDNECVAAMIGDVKVAVAGLAQA 1345          
BLAST of mRNA_S-dermatodea_contig8355.16532.1 vs. uniprot
Match: A0A061RK70_9CHLO (Nuclear export mediator factor nemf-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RK70_9CHLO)

HSP 1 Score: 108 bits (269), Expect = 2.390e-26
Identity = 50/96 (52.08%), Postives = 72/96 (75.00%), Query Frame = 1
Query:  118 SELDRLTGKPRDEDVLLFAVAVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRARDTPASHKALMKGVNDNECVAAMIGDVKVSVAGLAQA 405
            +ELD LTG PR +D+LLFA+ VC PY +L  YKY+VKLTPG+QK+GKA+K+A+++F R  +  +  K L++ V D E V+ M+G V++S+ GLA A
Sbjct:  144 TELDSLTGIPRXDDLLLFAIPVCAPYAALNGYKYRVKLTPGRQKKGKAAKEALDIFGRVNEATSREKELIRAVTDTEAVSGMVGPVQISMPGLAAA 239          
BLAST of mRNA_S-dermatodea_contig8355.16532.1 vs. uniprot
Match: A0A388M4N2_CHABU (CCHC-type domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M4N2_CHABU)

HSP 1 Score: 112 bits (281), Expect = 2.730e-26
Identity = 68/132 (51.52%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    1 RRAQKRQEDEEVRKLLEEEGGDELDGXXXXXXXXXXXXXSELDRLTGKPRDEDVLLFAVAVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRARDTPASHKALMKGVNDNECVAAMIGDVKVSVAGL 396
            RRA+ R E+ EV  LL EE   EL               +ELD LTG PR++DVLL+AV VCGPY +L++YKY+VKLTPG  K+GKA++ A+EVF+R  D     K LMK V + E VA MIG+VKV+  GL
Sbjct: 1244 RRARARAEEAEVTALLAEENILEL-------GDEDREKLTELDSLTGVPREDDVLLYAVPVCGPYSALQNYKYRVKLTPGTVKKGKAARTAVEVFARTVDVSPRQKDLMKAVPETELVAVMIGNVKVAAPGL 1368          
BLAST of mRNA_S-dermatodea_contig8355.16532.1 vs. uniprot
Match: A0A7S2HPI5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HPI5_9STRA)

HSP 1 Score: 103 bits (258), Expect = 5.790e-26
Identity = 51/93 (54.84%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  118 SELDRLTGKPRDEDVLLFAVAVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRARDTPASHKALMKGVNDNECVAAMIGDVKVSVAGL 396
            +EL++LTG P   DV++F V VCGPY SL+ YKYKVKLTPG  K+G+A KQA++VF+R ++     + L+K V+DNE V  +IG+VKVS  GL
Sbjct:   23 TELNKLTGLPLPSDVIMFCVPVCGPYQSLQRYKYKVKLTPGSTKKGRAGKQALDVFTRMKECSPRERDLIKFVSDNELVQTIIGEVKVSTPGL 115          
BLAST of mRNA_S-dermatodea_contig8355.16532.1 vs. uniprot
Match: A0A6U1AHC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA)

HSP 1 Score: 111 bits (278), Expect = 6.880e-26
Identity = 62/131 (47.33%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    4 RAQKRQEDEEVRKLLEEEGGDELDGXXXXXXXXXXXXXSELDRLTGKPRDEDVLLFAVAVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRARDTPASHKALMKGVNDNECVAAMIGDVKVSVAGL 396
            RAQK+Q + EV+K+LE+EG  + +               +L+RLTG P  +DVLLF + VC PY SL  YK++VKLTPG QK+GKA KQ+++VF R+++  +  + L++ V+DNE V ++IGDVKVS  GL
Sbjct: 1076 RAQKKQMEAEVKKMLEDEGFVDAEDDSPAGSYVM-----DLNRLTGVPHVDDVLLFCIPVCAPYQSLNGYKFRVKLTPGTQKKGKAGKQSMDVFQRSKECTSRERDLIRMVSDNELVHSIIGDVKVSTPGL 1201          
BLAST of mRNA_S-dermatodea_contig8355.16532.1 vs. uniprot
Match: A0A1E7FRS9_9STRA (DUF814-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRS9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.960e-25
Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = 1
Query:  118 SELDRLTGKPRDEDVLLFAVAVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRARDTPASHKALMKGVNDNECVAAMIGDVKVSVAGLAQA 405
            +ELD+LTGKP  ED++LFAV VC PY SL  Y Y+VKLTPG  KRGKASKQ I++F R    P   + L+K V DNE V A+ GDVK+S AG ++A
Sbjct:  909 AELDKLTGKPLGEDLILFAVPVCAPYQSLSKYAYRVKLTPGNMKRGKASKQCIDMFLRESAVPEHCRGLIKNVADNEWVQAICGDVKISAAGASKA 1004          
BLAST of mRNA_S-dermatodea_contig8355.16532.1 vs. uniprot
Match: A0A5J4XG72_9CHLO (Nuclear export mediator factor NEMF (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XG72_9CHLO)

HSP 1 Score: 105 bits (263), Expect = 2.330e-24
Identity = 59/125 (47.20%), Postives = 80/125 (64.00%), Query Frame = 1
Query:   22 EDEEVRKLLEEEGGDELDGXXXXXXXXXXXXXSELDRLTGKPRDEDVLLFAVAVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRARDTPASHKALMKGVNDNECVAAMIGDVKVSVAGL 396
            E +E+  LL EE  + LD              ++LD LTG PR +DVLLFAV VC PY +L+ YKYK+KLTPG Q++GKA++QA+E+ SR  DTP   K  +K V D + + A +G VK+S+ GL
Sbjct:  280 EQQEIAALLAEENVEVLD-------PEDRDRLTQLDSLTGVPRPDDVLLFAVPVCAPYSALQGYKYKLKLTPGTQRKGKAARQAVELLSRQPDTPVREKDFIKAVPDMDMINAFVGTVKLSMPGL 397          
BLAST of mRNA_S-dermatodea_contig8355.16532.1 vs. uniprot
Match: UPI000B8CF237 (nuclear export mediator factor NEMF-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CF237)

HSP 1 Score: 99.0 bits (245), Expect = 5.190e-24
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1
Query:  118 SELDRLTGKPRDEDVLLFAVAVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRARDTPASHKALMKGVNDNECVAAMIGDVKVSVAGLAQ 402
            +++D LTG P   D+LL+AV VCGPY +L+ YKY+VK+ PG  K+GKA+K A+ +FS   +     K LMK   D E VAA+IG+VK++ AGL Q
Sbjct:   23 NDMDYLTGNPLSSDILLYAVPVCGPYSALQSYKYRVKIIPGSAKKGKAAKTAMNLFSHMSEATNREKELMKACTDPELVAAIIGNVKITAAGLTQ 117          
BLAST of mRNA_S-dermatodea_contig8355.16532.1 vs. uniprot
Match: A0A1Y1IF78_KLENI (CCHC-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IF78_KLENI)

HSP 1 Score: 103 bits (258), Expect = 8.590e-24
Identity = 62/131 (47.33%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    4 RAQKRQEDEEVRKLLEEEGGDELDGXXXXXXXXXXXXXSELDRLTGKPRDEDVLLFAVAVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRARDTPASHKALMKGVNDNECVAAMIGDVKVSVAGL 396
            RAQ   E  E+  +LEEE   EL               +ELD LTG PR +D+LL+AV +CGPY +L+  K+KVKLTPG  K+GKA+K A+EVFSR  +     K LMK V D + VA M+G+ KV+  GL
Sbjct:  239 RAQNEGERAEIAAILEEENLQEL-------PDEERDRLTELDALTGVPRADDILLYAVPMCGPYTALQGCKFKVKLTPGTAKKGKAAKTAVEVFSRMPEATRREKELMKAVQDPDLVAVMLGNAKVTAPGL 362          
BLAST of mRNA_S-dermatodea_contig8355.16532.1 vs. uniprot
Match: A0A7S4IRG3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IRG3_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.200e-23
Identity = 62/141 (43.97%), Postives = 85/141 (60.28%), Query Frame = 1
Query:    4 RAQKRQEDEEVRKLLEEEG-----GDELDGXXXXXXXXXXXXXSELDRLTGKPRDEDVLLFAVAVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRARDTPASHKA------LMKGVNDNECVAAMIGDVKVSVAG 393
            +A+K  E E  R++L E+G     G + DG             +EL +LTGKP  +DVLL+A+ VC PY ++  YKY+VKLTPG QKRGKASKQ +E+F+R      +++A      L+K V DN+ V  M GDVK+S  G
Sbjct:  137 KAEKMAEKEAWREILAEDGIIDDEGKDNDGAVDDR--------AELGKLTGKPHPDDVLLYAIPVCAPYQTIAQYKYRVKLTPGSQKRGKASKQCLEMFARGDGGDKNNQASGRTRELIKAVGDNDWVQVMCGDVKISAPG 269          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8355.16532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHP2_ECTSI5.620e-4892.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A061RK70_9CHLO2.390e-2652.08Nuclear export mediator factor nemf-like n=1 Tax=T... [more]
A0A388M4N2_CHABU2.730e-2651.52CCHC-type domain-containing protein n=1 Tax=Chara ... [more]
A0A7S2HPI5_9STRA5.790e-2654.84Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6U1AHC6_9STRA6.880e-2647.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1E7FRS9_9STRA5.960e-2558.33DUF814-domain-containing protein n=1 Tax=Fragilari... [more]
A0A5J4XG72_9CHLO2.330e-2447.20Nuclear export mediator factor NEMF (Fragment) n=1... [more]
UPI000B8CF2375.190e-2450.53nuclear export mediator factor NEMF-like n=1 Tax=C... [more]
A0A1Y1IF78_KLENI8.590e-2447.33CCHC-type domain-containing protein n=1 Tax=Klebso... [more]
A0A7S4IRG3_9STRA3.200e-2343.97Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8355contigS-dermatodea_contig8355:609..1486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.8
Seed ortholog evalue6.8e-42
Seed eggNOG ortholog2880.D8LHP2
KEGG koko:K10589
KEGG Pathwayko04120,map04120
EggNOG free text desc.actin binding
EggNOG OGsCOG1293@1,KOG2030@2759
EC2.3.2.26
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925337.75173-CDS-S-dermatodea_contig8355:608..7911622925337.75173-CDS-S-dermatodea_contig8355:608..791Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8355 609..791 -
1694079865.1077754-CDS-S-dermatodea_contig8355:608..7911694079865.1077754-CDS-S-dermatodea_contig8355:608..791Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8355 609..791 -
1622925337.767596-CDS-S-dermatodea_contig8355:1264..14861622925337.767596-CDS-S-dermatodea_contig8355:1264..1486Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8355 1265..1486 -
1694079865.124557-CDS-S-dermatodea_contig8355:1264..14861694079865.124557-CDS-S-dermatodea_contig8355:1264..1486Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8355 1265..1486 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8355.16532.1prot_S-dermatodea_contig8355.16532.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8355 609..1486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8355.16532.1

>prot_S-dermatodea_contig8355.16532.1 ID=prot_S-dermatodea_contig8355.16532.1|Name=mRNA_S-dermatodea_contig8355.16532.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=135bp
RRAQKRQEDEEVRKLLEEEGGDELDGDGDGAAAAVAAAASELDRLTGKPR
DEDVLLFAVAVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRARD
TPASHKALMKGVNDNECVAAMIGDVKVSVAGLAQA
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mRNA from alignment at S-dermatodea_contig8355:609..1486-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8355.16532.1 ID=mRNA_S-dermatodea_contig8355.16532.1|Name=mRNA_S-dermatodea_contig8355.16532.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=878bp|location=Sequence derived from alignment at S-dermatodea_contig8355:609..1486- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCGCGCGCAAAAGAGGCAGGAGGACGAGGAGGTCCGGAAGCTCCTGGA GGAGGAAGGGGGGGATGAGCTCGACGGCGACGGCGATGGTGCGGCCGCGG CCGTGGCGGCGGCCGCGAGTGAGCTCGACCGACTTACCGGGAAGCCTCGG GATGAAGATGTGCTGCTGTTCGCCGTGGCCGTGTGCGGGCCGTATATGTC TCTGCGCGACTACAAGTACAAGGTGGGTTTTCTGCTTTGTTGTTTTTTTC CCCCGCCTGGCTGTGTTGTAGTATGTGGTATGTCGTAAGCTCGCTGGCGA TCGGCGTCCGAGGTGTAGTAGTAGATGTTCTGGCCCTCGTCGGCGGGGCT GCGTGGTTACGGTAGGTGGCTTGAGGAGCAGCGGTACAGGGGGCTTGGCA TACGAATAACACACATCGCCGGATGACTGTGTTCGGGAGATCATAGGTGT TACGGGTGTTCTTATGCTCCGAGTTACGAGCTAAGTGTGTTACCGCGAAC CCCCCCCCCCCCCCCAACCCTTATACGGACGCTAACAAGCGATTTTACGC AATATACTCACATTTTGTAGCCGTGTCGCCGCTAGCTCCGTTTTGCCAGC GTACACTTGGTTTCCAGCTGCCGCATGACACATGGAAGCGCTGAATTTCC CGCGTGCAACTCTGTTTTGCATCGCCTCTCTCCGCGCGACAAAAGGTGAA GCTAACACCGGGCAAGCAAAAGCGCGGCAAGGCCTCGAAGCAGGCCATCG AGGTCTTCTCCAGGGCGCGGGACACGCCAGCCTCCCACAAGGCTCTCATG AAAGGGGTCAACGATAACGAGTGCGTGGCGGCCATGATTGGCGACGTTAA GGTCTCCGTCGCGGGCCTGGCGCAGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8355:609..1486-

>mRNA_S-dermatodea_contig8355.16532.1 ID=mRNA_S-dermatodea_contig8355.16532.1|Name=mRNA_S-dermatodea_contig8355.16532.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at S-dermatodea_contig8355:609..1486- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCGCGCGCAAAAGAGGCAGGAGGACGAGGAGGTCCGGAAGCTCCTGGA
GGAGGAAGGGGGGGATGAGCTCGACGGCGACGGCGATGGTGCGGCCGCGG
CCGTGGCGGCGGCCGCGAGTGAGCTCGACCGACTTACCGGGAAGCCTCGG
GATGAAGATGTGCTGCTGTTCGCCGTGGCCGTGTGCGGGCCGTATATGTC
TCTGCGCGACTACAAGTACAAGCGCCGCGCGCAAAAGAGGCAGGAGGACG
AGGAGGTCCGGAAGCTCCTGGAGGAGGAAGGGGGGGATGAGCTCGACGGC
GACGGCGATGGTGCGGCCGCGGCCGTGGCGGCGGCCGCGAGTGAGCTCGA
CCGACTTACCGGGAAGCCTCGGGATGAAGATGTGCTGCTGTTCGCCGTGG
CCGTGTGCGGGCCGTATATGTCTCTGCGCGACTACAAGTACAAGGTGAAG
CTAACACCGGGCAAGCAAAAGCGCGGCAAGGCCTCGAAGCAGGCCATCGA
GGTCTTCTCCAGGGCGCGGGACACGCCAGCCTCCCACAAGGCTCTCATGA
AAGGGGTCAACGATAACGAGTGCGTGGCGGCCATGATTGGCGACGTTAAG
GTCTCCGTCGCGGGCCTGGCGCAGGCGGTGAAGCTAACACCGGGCAAGCA
AAAGCGCGGCAAGGCCTCGAAGCAGGCCATCGAGGTCTTCTCCAGGGCGC
GGGACACGCCAGCCTCCCACAAGGCTCTCATGAAAGGGGTCAACGATAAC
GAGTGCGTGGCGGCCATGATTGGCGACGTTAAGGTCTCCGTCGCGGGCCT
GGCGCAGGCG
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