mRNA_S-dermatodea_contig833.16517.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig833.16517.1
Unique NamemRNA_S-dermatodea_contig833.16517.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig833.16517.1 vs. uniprot
Match: A0A6H5J8M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M8_9PHAE)

HSP 1 Score: 439 bits (1129), Expect = 7.050e-141
Identity = 328/607 (54.04%), Postives = 369/607 (60.79%), Query Frame = 3
Query:   48 ESLLTEDDFNDFAAAVGEGLDG-SDDEASSDDFLSWLLVHADTIDPKLKLDEXXXXXXXXXXXXXXXXXXXXXXXXXXXNAVAPLQEYPGGGLSTILGAFASPPASTLAPAEGTAVAPGCLAASITPPSSTAHTWAIAGPGPVGVVGTGAGDYAGGE----------GGTPGAASDLHGRLAAAGGIPSDPVLAMQMGARMALAGNLNLIPFG--MGSGAGTTGADASTAVAPAPLQPDVSTQTERCRLKQQGGAALTPTGTNCPAHTPATQTA----GLPAWTSFPPPPEWSKVE---QSIPPTAVGVSSTG--EAFGTRGGAVRDGSAVEGFEVGLAGLGSGTDGANVGDKRPRASSTAGESKP------GRDTFKDGRRRKRMSAGELEERVKQVSEDNGRLKLHLSNVNDKLKLMATRKKAMEAEIAAKLNTQRSVPSEANTASLAEALSRFKDLYADYGAQRKQEVEFHFKQLERLIVPTDTTKMSLWTLEQDESFYKDRKRGGLSFILRDELGVSEEQIARIQERRTRIKSLLAELRESLRLVKNLQKSSEAKSAKFEEVMARLQSSFSPQQIARLLLWVSTNRAHISKLPLLPKDILQQR 1784
            + +LTEDDF+DFAAAVGEG DG S+D+A SDDFLSWLL+HAD+IDPKL  D+                  XXXXXXXXX                                           +  T  ++ + +  +   G       GAGD +GG+          G  P         LA  G IPSDPVLAMQMGARMAL+GNL LIPFG  MGSG G  GA   T  A A      STQ +   +                             GLPAWT  P PP+W + E   Q +PP+    SS+   E  G  G     G+   G     AG+ +G      G KRPRA   A  +K        RDT KDGR+RK+M+ GELEERVKQVSEDNG+LKLHLSNVNDKL LMA++KK MEAEIAAKL  QRS PS+ N ASLAEALSRFKDLYADYG QRKQEVEFH +QLER IVPTDTTKMSLWTLEQDESFYKDRKRG LS ILR ELGVSEEQI RIQERR RIKSLL EL ESLRLV++LQKSSEAK+ KFEEVM RLQS+FSPQQIARLLLWVS NRAHISKLPLLPK +LQQR
Sbjct:    2 DDILTEDDFDDFAAAVGEGGDGGSEDDARSDDFLSWLLLHADSIDPKL--DDCVIDSDGSEVAAPARAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGSTRDTTASDSDRVGKEG-------GAGDPSGGDASFGVGAVGIGSAPEQGVLPSSSLATVGRIPSDPVLAMQMGARMALSGNLGLIPFGASMGSG-GIAGAIGGTPAAGA-KPTAASTQAQHPLIAPPAALXXXXXXXXXXXXXXXXXXXXXXDGLPAWTGLPHPPQWLETEKHPQGVPPSHKANSSSRGVETPGVTGAGSPKGN---GSAWQAAGVDAGAYSGGEGKKRPRADGAAQAAKTEETKARARDTSKDGRKRKKMTLGELEERVKQVSEDNGQLKLHLSNVNDKLMLMASKKKLMEAEIAAKLEAQRSHPSDLNQASLAEALSRFKDLYADYGKQRKQEVEFHLRQLERQIVPTDTTKMSLWTLEQDESFYKDRKRGSLSLILRAELGVSEEQIERIQERRARIKSLLNELGESLRLVRDLQKSSEAKTTKFEEVMERLQSAFSPQQIARLLLWVSANRAHISKLPLLPKTLLQQR 594          
BLAST of mRNA_S-dermatodea_contig833.16517.1 vs. uniprot
Match: D8LKP0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP0_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 4.260e-91
Identity = 254/522 (48.66%), Postives = 285/522 (54.60%), Query Frame = 3
Query:   48 ESLLTEDDFNDFAAAVGEGLDG-SDDEASSDDFLSWLLVHADTIDPKLKLDEXXXXXXXXXXXXXXXXXXXXXXXXXXXNAVAPLQEYPGGGLSTILGAFASPPASTLAPAEGTAVAPGCLAASITPPSSTAHTWAIAGPGPVGVVGTGAGDYAGGEGGTPGAASDLHGR----------LAAAGGIPSDPVLAMQMGARMALAGNLNLIPFG--MGSGAGTTGADASTAVAPAPLQPDVSTQTER------CRLKQQGGAALTPTGTNCPAHTPATQTAGLPAWTSFPPPPEWSKVE---QSIPPT-AVGVSSTG-EAFGTRGGAVRDGSAVEGFEVGL-AGLGSGTDGANVGDKRPRASSTAGESKP------GRDTFKDGRRRKRMSAGELEERVKQVSEDNGRLKLHLSNVNDKLKLMATRKKAMEAEIAAKLNTQRSVPSEANTASLAEALSRFKDLYADYGAQRKQEVEFHFKQLERLIVPTDTTKMSLWTLEQDESFYKDRKRGGLSFILRDELG 1520
            + +LTEDDF+DFAAAVGEG DG S+D+A SDDFLSWLLVHAD+IDPKL+                           XXX                                                 S        +G   VG  G GAGD +GG+      A  +             LA  G IPSDPVLAMQMGA+MAL+GNL LIPFG  MG+G G  GA + T  A A      STQ +         L                   P     GLPAWT  P PP+W K E   Q +PP+     SS G E  G  G     G+      VG+ AG  SG +    G KRPRA   A  +K        RDT KDGR+RK+MS GELEERVKQVSEDNG+LKLHLSNVNDKL LMA++KK MEAEIAAKL  QRS PS++N ASLAEALSRFKDLYADYG QRKQEVEFH +QLER IVPTDTTKMSLWTLEQDESFYKDRKRG LS ILR ELG
Sbjct:    2 DDILTEDDFDDFAAAVGEGGDGGSEDDARSDDFLSWLLVHADSIDPKLE--------DCVIGSDGSEVAAPARAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGNTRDTTASGADRVGKEG-GAGDPSGGDAAFGVGAVGIDSAPEEGVLQSSSLATVGRIPSDPVLAMQMGAQMALSGNLGLIPFGASMGTG-GIAGAISGTPTAGA-KPTAASTQAQHPLIAPPAALXXXXXXXXXXXXXXXXXXVPPL--GGLPAWTGLPHPPQWLKKEEHPQGVPPSHKTNSSSRGVETPGVTGAGSPKGAGSARQAVGVDAGAYSGGE----GKKRPRADGAAQTAKTEETRARARDTSKDGRKRKKMSLGELEERVKQVSEDNGQLKLHLSNVNDKLMLMASKKKLMEAEIAAKLEAQRSHPSDSNQASLAEALSRFKDLYADYGKQRKQEVEFHLRQLERQIVPTDTTKMSLWTLEQDESFYKDRKRGSLSLILRAELG 506          
BLAST of mRNA_S-dermatodea_contig833.16517.1 vs. uniprot
Match: A0A7S1U3Q8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3Q8_9STRA)

HSP 1 Score: 156 bits (395), Expect = 6.130e-39
Identity = 92/213 (43.19%), Postives = 135/213 (63.38%), Query Frame = 3
Query: 1104 RRRKRMSAGELEERVKQVSEDNGRLKLHLSNVNDKLKLMATRKKAMEAEIAAKLNTQRSVPSEANTASLAEALSRFKDLYADYGAQRKQEVEFHFKQLERLIVPTDTTKMSLWTLEQDESFYKDRKRGGLSFILRDELGVSEEQIARIQERRTRIKSLLAELRESLRLVKNLQKSSEAKSAKFEEVMARLQSSFSPQQIARLLLWVSTNRAHI 1742
            R++KR    EL+ER++ +  +N  L  HL+NV ++ KL+   KKAMEA I   L   +S    A+ A LA  +  FK+ YADYG QR++E  FH  QLERL++PT TTKMSLWT+EQ  SF+ D  +  L  IL+ ELGV++EQ  RI   R R+K  + +LR ++ L+++L++    K ++F+  M +L    +P Q A+L+LWV TNR  +
Sbjct:    9 RKKKRPKIEELQERLEVLRSENSELTHHLTNVEERHKLLNAEKKAMEALIRRTLEATQS--GAADPAQLARCIGDFKNRYADYGPQRQRECNFHMDQLERLLIPTQTTKMSLWTMEQPPSFFDDPNKNSLGAILKRELGVTQEQRDRISRLRERVKEAVRDLRAAVALLRDLREHINHKHSRFDVRMTQLMEILTPMQSAKLILWVKTNRHRV 219          
BLAST of mRNA_S-dermatodea_contig833.16517.1 vs. uniprot
Match: A0A7S4DKP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKP9_HETAK)

HSP 1 Score: 152 bits (384), Expect = 3.400e-36
Identity = 93/234 (39.74%), Postives = 144/234 (61.54%), Query Frame = 3
Query: 1107 RRKRMSAGELEERVKQVSEDNGRLKLHLSNVNDKLKLMATRKKAMEAEIAAKLNTQRSVPSEANTASLAEALSRFKDLYADYGAQRKQEVEFHFKQLERLIVPTDTTKMSLWTLEQDESFYKDRK-RGGLSFILRDELGVSEEQIARIQERRTRIKSLLAELRESLRLVKNLQKSSEAKSAKFEEVMARLQSSFSPQQIARLLLWVSTNRA---------HISKLPLLPKDILQ 1778
            +RKR +A ELEER++ + E++ +LK HL N  DK   +A +K  ME ++ A+L              +   L ++KDLY+DYG QRK+EV+FH  QL+ L+ PT TTKMSLWTLEQDE+F+ D      L +IL  E+G++ EQ  +I+  R++I  L+ EL++S+ L++ ++   +AK  KF++ M  LQ+  +P+Q  +LLLW++ N+          H  + PL  K+ LQ
Sbjct:  185 KRKRETAEELEERLRVLKEEHNQLKSHLQNTEDKASQIAEQKFKMEKQLRAELQI--------GGTGIGPLLRQYKDLYSDYGEQRKKEVDFHLAQLQTLLTPTTTTKMSLWTLEQDEAFFADEADETSLMYILTQEMGLTPEQKTKIKGHRSKILGLVEELKKSVVLMQKIRDMVQAKHKKFDKHMGNLQALLTPKQSVQLLLWITNNKKLLEGYVPDFHQEEQPLEEKEQLQ 410          
BLAST of mRNA_S-dermatodea_contig833.16517.1 vs. uniprot
Match: I2CPN1_NANGC (BZIP domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPN1_NANGC)

HSP 1 Score: 140 bits (353), Expect = 1.920e-33
Identity = 93/230 (40.43%), Postives = 135/230 (58.70%), Query Frame = 3
Query: 1083 RDTFKDGRRRKRMSAGELEERVKQVSEDNGRLKLHLSNVNDKLKLMATRKKAMEAEIAAKLNTQRSVPSEANTASLAEALSRFKDLYADYGAQRKQEVEFHFKQLERLIVPTDTTKMSLWTLEQDESFYKDRKRGGLSFILRDELGVSEEQIARIQERRTRIKSLLAELRESLRLVKNLQKSSEAKSAKFEEVMARLQSSFSPQQIARLLLWVSTNRAHI-SKLPLLPKD 1769
            R++ ++ RRR+R  A EL  RV  +  +N RL                       E+   L        +A+   +A  L  FK+ YADYG QR++EV FH +QLE L++PT TTKMSLWTLEQD++F++D  +  LS IL + LG+S EQ ++IQ RR RI+ L+  L+ESL L+  L+++ E + A+FEE M  LQS  +P Q  +L+LWV+ N A + S +P   +D
Sbjct:   15 RESARECRRRQRAHAEELASRVSALQAENRRLXXXXXXXXXXXXXXXXXXXXXXQEMEVMLQK------DASEEEMAGYLEHFKECYADYGDQRRKEVNFHLQQLEALLLPTQTTKMSLWTLEQDDTFFRDTGKTSLSAILLETLGISIEQKSKIQARRERIRHLVDHLKESLGLLGRLKENVEGRYARFEEHMGSLQSVLTPTQRVQLVLWVTKNEALLASSIPGFARD 238          
BLAST of mRNA_S-dermatodea_contig833.16517.1 vs. uniprot
Match: A0A7S1GL93_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GL93_CYCTE)

HSP 1 Score: 132 bits (333), Expect = 2.580e-29
Identity = 80/213 (37.56%), Postives = 128/213 (60.09%), Query Frame = 3
Query: 1104 RRRKRMSAGELEERVKQVSEDNGRLKLHLSNVNDKLKLMATRKKAMEAEIAAKLNTQRSVPSEANTASLAEALSRFKDLYADYGAQRKQEVEFHFKQLERLIVPTDTTKMSLWTLEQDESFYKDRKRGGLSFILRDELGVSEEQIARIQERRTRIKSLLAELRESLRLVKNLQKSSEAKSAKFEEVMARLQSSFSPQQIARLLLWVSTNRAHI 1742
            RRRK+    + E ++  +  +N  LK HL+NV+++ +     ++  E E+      +R     A++  L   LS+F ++Y+DYG  R +E+ FH KQLERL  PT+ TKM LWTL Q E+F+ D KR  ++ ILR ELG++ +Q  +I E+R +I+ L   L+E L L+ NL+   E K   + + M++ Q   +P+Q+ +LLLWV  + +HI
Sbjct:  220 RRRKKPRLSDCESKLATLKAENELLKRHLANVSNRSEKFEEERRKQEHEM------RRLAEGGASSEQLRPLLSKFSEMYSDYGRHRDEELSFHLKQLERLAAPTNFTKMGLWTLGQSEAFFTDLKRNPIAGILRKELGITPQQGRKILEKRQKIRDLCTSLKECLGLLANLKTICEHKQKVYHDRMSKCQQILTPRQVVKLLLWVD-DHSHI 425          
BLAST of mRNA_S-dermatodea_contig833.16517.1 vs. uniprot
Match: A0A0P1AA06_PLAHL (Camp responsive element modulator n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AA06_PLAHL)

HSP 1 Score: 110 bits (275), Expect = 1.780e-23
Identity = 73/232 (31.47%), Postives = 130/232 (56.03%), Query Frame = 3
Query: 1083 RDTFKDGRRRKRMSAGELEERVKQVSEDNGRLKLHLSNVNDKLKLMATRKKAMEAEIAAKLNTQRSVPSEANTASLAEALSRFKDLYADYGAQRKQEVEFHFKQLERLIVPTDTTKMSLWTLEQDESFYKDRK-RGGLSFILRDELGVSEEQIARIQERRTRIKSLLAELRESLRLVKNLQKSSEAKSAKFEEVMARLQSSFSPQQIARLLLWVSTNRAHISKLPLLPKDIL 1775
            R++ ++ RRRKR     +EER +Q+  +N  L+  L    + ++     K  +  E+      ++ +   A+   LAE +  FK+ Y+DYG  R+  + +H  Q+ERL++PT  TKM +W L QD+SF+++ +    L  IL  ELG+SE+Q  +IQ++R  I  +   L+ +L L+  L+     K++  +  M +LQ+  +P Q A+ ++WV+ N+A +  L  L + +L
Sbjct:   14 RESARECRRRKREHILGVEERCRQLERENMELRGQLKAGKEAIRQEEKEKNRVCEEL------EKMIKCGASEKELAEKIDNFKEQYSDYGHGRRSALSYHLHQIERLLLPTQVTKMCIWALRQDDSFWQEEEDETSLPVILAKELGLSEDQKKKIQQQRGSISLICENLKSALELLAELKTEVTNKNSTLDTEMEKLQNILTPTQRAKFIVWVTNNQACMHLLNKLWRTVL 239          
BLAST of mRNA_S-dermatodea_contig833.16517.1 vs. uniprot
Match: A0A5D6XWQ0_9STRA (BZIP domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWQ0_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.000e-23
Identity = 77/232 (33.19%), Postives = 131/232 (56.47%), Query Frame = 3
Query: 1083 RDTFKDGRRRKRMSAGELEERVKQVSEDNGRLKLHLSNVNDKLKLMATRKKAMEAEIAAKLNTQRSVPSEANTASLAEALSRFKDLYADYGAQRKQEVEFHFKQLERLIVPTDTTKMSLWTLEQDESFYKDRK-RGGLSFILRDELGVSEEQIARIQERRTRIKSLLAELRESLRLVKNLQKSSEAKSAKFEEVMARLQSSFSPQQIARLLLWVSTNRAHISKLPLLPKDIL 1775
            R++ ++ RRRKR     +EER +Q+  +N  L+  L    + +KL    K  +  E+      ++ +   A+   LAE +  FK+ Y+DYG  R+  + +H  Q+ERL++PT  TKM +W L QD+SF++D +    L  IL  ELG+SEEQ  +IQ++R  I  +   L+ +L L+  L+     K++  +  M +LQ+  +P Q A+ ++WV+ N+A +  L  L + +L
Sbjct:  313 RESARECRRRKREHILGVEERCRQLERENMELRGQLKAGKEAMKLEEKEKNRVCEEL------EQMIQCGASEKELAEKIDNFKEQYSDYGHGRRSALSYHLHQIERLLLPTQVTKMCIWALRQDDSFWQDEEDETSLPVILAKELGLSEEQKKKIQQQRGSISLICQNLKNALSLLDELKTEVIQKNSTLDMEMDKLQNILTPTQRAKFIVWVTNNQACMHLLNKLWRSVL 538          
BLAST of mRNA_S-dermatodea_contig833.16517.1 vs. uniprot
Match: A0A8K1CBI5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBI5_PYTOL)

HSP 1 Score: 112 bits (281), Expect = 1.880e-22
Identity = 85/266 (31.95%), Postives = 144/266 (54.14%), Query Frame = 3
Query: 1008 SGTDGANVGDKRPRASSTAGES---------KPGRDTFKDGRRRKRMSAGELEERVKQVSEDNGRLKLHLSNVNDKLKLMATRKKAMEAEIAAKLNTQRSVPSEANTASLAEALSRFKDLYADYGAQRKQEVEFHFKQLERLIVPTDTTKMSLWTLEQDESFYKDRKRG-GLSFILRDELGVSEEQIARIQERRTRIKSLLAELRESLRLVKNLQKSSEAKSAKFEEVMARLQSSFSPQQIARLLLWVSTNRAHISKLPLLPKDIL 1775
            SG D  N   K+ R+SS+  ES         +  R++ ++ RRRKR     +EER +Q+  +N  L+  L    + +K     K  +  E+      ++ +   A+   LAE +  FK+ Y+DYG  R+  +++H  Q+ERL++PT  TKM +W L QD+SF+ D +    L  IL  ELG+SEEQ  +IQ++R    ++   L+ +L L+  L+    +K+   +  M +LQ+  +P Q A+ ++WV+ N+A +  L  L + +L
Sbjct:  232 SGMDLTNQEIKQERSSSSGSESPDRLRKLKLERNRESARECRRRKREHILGVEERCRQLERENMELRGQLKAGKEAMKQEEREKNRVCEEL------EQMIQRGASEKELAEKIDNFKEQYSDYGHGRRSALDYHLHQIERLLLPTQVTKMCIWALRQDDSFWHDDEDDTSLPAILARELGLSEEQKKKIQQQRAPFLAICDNLKTALGLLNELKTQVASKNTTLDMEMDKLQNILTPTQRAKFIVWVTNNQACMHLLNKLWRSVL 491          
BLAST of mRNA_S-dermatodea_contig833.16517.1 vs. uniprot
Match: A0A6A3LMW2_9STRA (BZIP domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LMW2_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.890e-22
Identity = 74/232 (31.90%), Postives = 131/232 (56.47%), Query Frame = 3
Query: 1083 RDTFKDGRRRKRMSAGELEERVKQVSEDNGRLKLHLSNVNDKLKLMATRKKAMEAEIAAKLNTQRSVPSEANTASLAEALSRFKDLYADYGAQRKQEVEFHFKQLERLIVPTDTTKMSLWTLEQDESFYKDRK-RGGLSFILRDELGVSEEQIARIQERRTRIKSLLAELRESLRLVKNLQKSSEAKSAKFEEVMARLQSSFSPQQIARLLLWVSTNRAHISKLPLLPKDIL 1775
            R++ ++ RRRKR     +EER +Q+  +N  L+  L    + ++     K  +  E+      ++ + S A+   LAE +  FK+ Y+DYG  R+  + +H  Q+ERL++PT  TKM +W L QD+SF++D +    L  IL  ELG++E+Q  +IQ++R  I  +   L+ +L L+  L+     K++  +  M +LQ+  +P Q A+ ++WV+ N+A +  L  L + +L
Sbjct:  212 RESARECRRRKREHILGVEERCRQLERENMELRGQLKAGKEAIRQEEKEKNRVCEEL------EKMIQSGASEKELAEKIDNFKEQYSDYGHGRRSALSYHLHQIERLLLPTQVTKMCIWALRQDDSFWQDEEDETSLPVILAKELGLTEDQKKKIQQQRGSISLICENLKSALGLLAELKTEVTNKNSTLDMEMEKLQNILTPTQRAKFIVWVTNNQACMHLLNKLWRSVL 437          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig833.16517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8M8_9PHAE7.050e-14154.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKP0_ECTSI4.260e-9148.66Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1U3Q8_9STRA6.130e-3943.19Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4DKP9_HETAK3.400e-3639.74Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
I2CPN1_NANGC1.920e-3340.43BZIP domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S1GL93_CYCTE2.580e-2937.56Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A0P1AA06_PLAHL1.780e-2331.47Camp responsive element modulator n=1 Tax=Plasmopa... [more]
A0A5D6XWQ0_9STRA5.000e-2333.19BZIP domain-containing protein n=1 Tax=Pythium bra... [more]
A0A8K1CBI5_PYTOL1.880e-2231.95Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3LMW2_9STRA1.890e-2231.90BZIP domain-containing protein n=5 Tax=Phytophthor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig833contigS-dermatodea_contig833:10901..23724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2e-24
Seed eggNOG ortholog115417.EPrPW00000024411
EggNOG free text desc.function. Source PGD
EggNOG OGs1MFYD@121069,29I2I@1,2RR9D@2759
COG Functional cat.K
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_001040.1
Exons11
Model size2566
Cds size1800
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925336.2285511-UTR-S-dermatodea_contig833:10900..109081622925336.2285511-UTR-S-dermatodea_contig833:10900..10908Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig833 10901..10908 +
1694079863.9633-UTR-S-dermatodea_contig833:10900..109081694079863.9633-UTR-S-dermatodea_contig833:10900..10908Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig833 10901..10908 +
1622925336.3742707-UTR-S-dermatodea_contig833:22966..237241622925336.3742707-UTR-S-dermatodea_contig833:22966..23724Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig833 22967..23724 +
1694079864.0883923-UTR-S-dermatodea_contig833:22966..237241694079864.0883923-UTR-S-dermatodea_contig833:22966..23724Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig833 22967..23724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925336.242181-CDS-S-dermatodea_contig833:10908..110311622925336.242181-CDS-S-dermatodea_contig833:10908..11031Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 10909..11031 +
1694079863.9752152-CDS-S-dermatodea_contig833:10908..110311694079863.9752152-CDS-S-dermatodea_contig833:10908..11031Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 10909..11031 +
1622925336.254391-CDS-S-dermatodea_contig833:14671..151671622925336.254391-CDS-S-dermatodea_contig833:14671..15167Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 14672..15167 +
1694079863.9852474-CDS-S-dermatodea_contig833:14671..151671694079863.9852474-CDS-S-dermatodea_contig833:14671..15167Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 14672..15167 +
1622925336.265456-CDS-S-dermatodea_contig833:15977..161111622925336.265456-CDS-S-dermatodea_contig833:15977..16111Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 15978..16111 +
1694079863.9959035-CDS-S-dermatodea_contig833:15977..161111694079863.9959035-CDS-S-dermatodea_contig833:15977..16111Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 15978..16111 +
1622925336.2775872-CDS-S-dermatodea_contig833:16621..169081622925336.2775872-CDS-S-dermatodea_contig833:16621..16908Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 16622..16908 +
1694079864.0054603-CDS-S-dermatodea_contig833:16621..169081694079864.0054603-CDS-S-dermatodea_contig833:16621..16908Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 16622..16908 +
1622925336.287401-CDS-S-dermatodea_contig833:17505..175961622925336.287401-CDS-S-dermatodea_contig833:17505..17596Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 17506..17596 +
1694079864.0143578-CDS-S-dermatodea_contig833:17505..175961694079864.0143578-CDS-S-dermatodea_contig833:17505..17596Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 17506..17596 +
1622925336.3031955-CDS-S-dermatodea_contig833:17982..180301622925336.3031955-CDS-S-dermatodea_contig833:17982..18030Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 17983..18030 +
1694079864.0235026-CDS-S-dermatodea_contig833:17982..180301694079864.0235026-CDS-S-dermatodea_contig833:17982..18030Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 17983..18030 +
1622925336.316936-CDS-S-dermatodea_contig833:18889..189641622925336.316936-CDS-S-dermatodea_contig833:18889..18964Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 18890..18964 +
1694079864.0326374-CDS-S-dermatodea_contig833:18889..189641694079864.0326374-CDS-S-dermatodea_contig833:18889..18964Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 18890..18964 +
1622925336.3271425-CDS-S-dermatodea_contig833:21092..212031622925336.3271425-CDS-S-dermatodea_contig833:21092..21203Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 21093..21203 +
1694079864.042125-CDS-S-dermatodea_contig833:21092..212031694079864.042125-CDS-S-dermatodea_contig833:21092..21203Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 21093..21203 +
1622925336.336157-CDS-S-dermatodea_contig833:21843..219891622925336.336157-CDS-S-dermatodea_contig833:21843..21989Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 21844..21989 +
1694079864.0534143-CDS-S-dermatodea_contig833:21843..219891694079864.0534143-CDS-S-dermatodea_contig833:21843..21989Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 21844..21989 +
1622925336.3514056-CDS-S-dermatodea_contig833:22240..223551622925336.3514056-CDS-S-dermatodea_contig833:22240..22355Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 22241..22355 +
1694079864.0675445-CDS-S-dermatodea_contig833:22240..223551694079864.0675445-CDS-S-dermatodea_contig833:22240..22355Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 22241..22355 +
1622925336.3613002-CDS-S-dermatodea_contig833:22792..229661622925336.3613002-CDS-S-dermatodea_contig833:22792..22966Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 22793..22966 +
1694079864.0777493-CDS-S-dermatodea_contig833:22792..229661694079864.0777493-CDS-S-dermatodea_contig833:22792..22966Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig833 22793..22966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig833.16517.1prot_S-dermatodea_contig833.16517.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig833 10909..22966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig833.16517.1

>prot_S-dermatodea_contig833.16517.1 ID=prot_S-dermatodea_contig833.16517.1|Name=mRNA_S-dermatodea_contig833.16517.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=600bp
MHRGGNMEESLQGESLLTEDDFNDFAAAVGEGLDGSDDEASSDDFLSWLL
VHADTIDPKLKLDEDEADADAAKPEANAAAGEGSGTSSSSSNAVAPLQEY
PGGGLSTILGAFASPPASTLAPAEGTAVAPGCLAASITPPSSTAHTWAIA
GPGPVGVVGTGAGDYAGGEGGTPGAASDLHGRLAAAGGIPSDPVLAMQMG
ARMALAGNLNLIPFGMGSGAGTTGADASTAVAPAPLQPDVSTQTERCRLK
QQGGAALTPTGTNCPAHTPATQTAGLPAWTSFPPPPEWSKVEQSIPPTAV
GVSSTGEAFGTRGGAVRDGSAVEGFEVGLAGLGSGTDGANVGDKRPRASS
TAGESKPGRDTFKDGRRRKRMSAGELEERVKQVSEDNGRLKLHLSNVNDK
LKLMATRKKAMEAEIAAKLNTQRSVPSEANTASLAEALSRFKDLYADYGA
QRKQEVEFHFKQLERLIVPTDTTKMSLWTLEQDESFYKDRKRGGLSFILR
DELGVSEEQIARIQERRTRIKSLLAELRESLRLVKNLQKSSEAKSAKFEE
VMARLQSSFSPQQIARLLLWVSTNRAHISKLPLLPKDILQQRALVKHET*
back to top

mRNA from alignment at S-dermatodea_contig833:10901..23724+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig833.16517.1 ID=mRNA_S-dermatodea_contig833.16517.1|Name=mRNA_S-dermatodea_contig833.16517.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=12824bp|location=Sequence derived from alignment at S-dermatodea_contig833:10901..23724+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCACACACATGCACCGCGGTGGAAACATGGAAGAAAGCTTGCAAGGCGAA AGCCTGTTAACAGAAGACGATTTTAACGACTTCGCCGCGGCCGTAGGCGA AGGACTGGACGGGAGCGATGACGAAGCTAGCGTGAGTTTAGTTGCAAAAG CTATATACAGCCCAGTTTCAATTTTCCTCTTTTTCTCGACCTATCATAGG AAAATAACGGGGGCGGGACTGTCAGCTGCCATCCATTGCGCATGCGACGT TGATTGTGGTCGCTCCCGTTCAGCTCACGGTCCGATGCGAGGGGCTCGAA GAAGAGTCGTGAGTGTATTTGGCCAACGCCTAGTGGGTACCCGACTCGTT GACGACTACTGTAGTCTCCGTAGATTGAATCAAATCAAACTCCACATTTT CTCTGAGAGCCTACACACATAGACCTATGCTGCAGACCTACTTGAAGGGC TCTGTTATCTTATTAACAAGGCACGTTTTGTCATTAATAGACAAGGATTG TGTCCAGCGAATCCCACATGATTTCTGTACGATTATTAATAGCGATTTAG AGAAGGATTTTGATGCCACATGAACTTGATGTTTGTTTAGAGCGTTTTTT TTTTTTGAGCTCTAAAGGTACAGCTGTAGAGCTCTAGAGCAGTAGGTTGC CACACTTGATTTTTGCGCTCTGCCCCCGCCTCGATCCCAGCCCCGCTCGG CCGCGGTCGGCCGCGGCTCGCTCTCGCGTTCGCTCGAGCACCCACGCCGC CCCCGCCGCCACGCCGCCAGAGGCAGCAGCCAGCAGCGCCGCCACGGACA TAGCGATCATCTTCTCGAGACAGCACAAACAAAGCACCAGTCAGTGCACA CAAAAACAGCAGTCACACAAGCAGCAGCGAGCTGCCAGACAGAGCATCGC GCAGCCATGCACACACCCACCCGCCGCCCGCCCGGCCCGCAGCCAGGTAC GCGCTGCCTCTCCTCCTCAGGTCCTAAACAACCTATCTCATCGAAAAACG TCCCTCTCTCTCTGTCTGTCGGGAGCAGCACCCATCAATAAGTTATGATA TATTGGTGTATAGCTTGAAACTTTTTTTGTGCTTTGTTTTTTCGTGAAAA GATATGTCATCACCTACTCCTTTGCATCTCCCTCTGCTCGATGGAGACAG CCCACAAAAAATACACAACTGCCCACGTGCAGCAGCAACAGCCAGCTCCT TCTAGCACGCTCGCCTTCCTCCGTGGGGTGAACGTTTGCCGTAGGTGAAC GCCTGCCGTGGGTACTGCCGCCACCGGCATATCGTTTTGCCAACGCACAC ACCTCACGGGCGTAGCCGTGGCTACCTACTAGTCTTATTAACGAATACAA CAAGGTACGTTTTTTCATTAAGATTTAGAGGAGGATTCTGTCCAGCGAAT CCTATATGATTTCTGTACGATTTTTAATAGCGATTTAGAGAAGGATTTTG ATGCCAACCAACTTTATGTGTCGAGCGATACTTGTTATTTGTGTTGAGCG CCAAAGGCTTGATTTTTGCCCTCGGCCGCCGCCGCCGCCGCCGCCGCCGC CGTCACCACCATGGCCACAAGCCACAGTCAGCAGCACAGCCAGCAACGCC AGCAGCGCCAGCAGCGCCAGCAGCGCCAGCAGCCACAGCCAGCAGCCACA GCCAGCAGCACCAGCAGCACCAGCCACAGTCAGCAGCACAGCCACAGTCA GTAGCACAGCCATCTGCCTCGCACCTCGCACAGCATCTTGACTAAAAACA CACCCGCCGCCGCCCGCGCCGCCACCGCCGCGGGTCGCCGTTGCCACGGC CGTGTAGCAGCAGCACAGCCAGCAGCCACACTGTCGCCCGCGCTAACCGC TGTCGTTGGGTGTTGGTTCGCCTGTAGCGGTTCACAGCTGACACAGGACA GCACACACTCATCATTTTGTTTTCCTCTTGGGGTATGACCGTTGTATGTA TACTTCCTTCTTTCCTTCTTTTTTTTGTCTTCTTCGCTCTAATTTTTAGA ACCACTTTTAATAGCGATTGAGAGAACGATTCTGTCACACTAAATTGTGA GGACATGACAGGCCGGTTTCGTATACTACACTCCTTTACGATTTTGTGAT TTTGTTTAGTGCGCCAATTTTGAAAGACACTGGGTCTTGTTCCAAAGCTG CCAACGCACACCTCACACGGGCGTAGCCGTGGCTACCCACTAGTCTTATT ACGAACTACTTAATGCAACAAGGTACCTTGTACGTTTTTTGTTTTTTCGT TCAGATTTAGAGAAGCATTATGTCCAGCGAAGCCTATATGATTTATGTAC GATTTTTAATAGCGATTCAGAGAAGGATTGTGATGCCAAATAAGTTGATG GGTGTGTCGAGCGATATTTGTTTATTTGTGTTGAGCGCCAAATTTTGATT TTTGCGCTCGGCCGCCGACGCCGCCGCCGCCGTCACCACCATGGCCACAA GCCACAGTCAGCAGTACAGCCAGCAGCGCCAGCAGCAGCAGCAACCGCAG TCAGTAGCACAGCCAGCGGCGCTACTACGCGCGCTGCCAGAAACGATACA TCATCTGCCTCGCACCTCACACAGCATCTTGACTAAAAACACACCCACCG CCGCCCCCGCCGCCGCCGCCGCGGGTCGCCGTCGCCGTCGCCACGGCCGT CTAGCAGACGCACAGCCAGCAGCAGCACAGCCAGCAGCCACACTGTCGTC CGCGCTAACCGCTGTCGCTGGGTGGTGGTTCCCCCGTAGCTGTTCACAGC ACACACAGGACAGCACACACTCATCAGAGTGTTTTCATCTTGGGGTGTGA CCGTTGTGTGTATACTTGCTTCTGTCCTTCTCTTTTTGTCTCCCTCTTCG CTATAGTGCTTACAGCCATTTTTACTAGCGATTTAGAGGACGATTCTGTC ACCGGAATTTGCGATGACGACATGAGGCCGATTTCGCATACTAAACTCCT ATACGATTTTGTGTCGTTTTTTAGTGCGCCAGTTTTGAAAGACATAAGGC ATTTTTCCAAAGCTGCCAACGCACACCTCACACGGGTGTAGCCGTGGCTA CCCACTAGTTATTATAATTAATTTATTATTATTACAGTATCACACATACA ACGTTAGGGCCCGGTGTGTACGGTTGCTGTCATGATGTGTTTTGGTATTT GTTGCAATGAACCAAGGGCAGCTTGGCTTGTGTCGAACAATACGGTCATA CCCAGGGGCGTTCCTGTTGAACACTACTCCTGTGTAGTTGTCGATCGACA CGATGTTGTGCATCTTCAGTAGACTGCGGCTGCCGGACACGCGGAATAGC TGCATCTCCGAAGTTTAGGTAGAGCAGGATTACTCACCAGGAGAGGTTTT TGCGAGATACGTTACGGGGAAACGGCTACAACACTGGTAGCAGTCTTGAA ATGAATATGGTGAGCGTGGAATCCATAAACCGCTTCTTCCAGCGCTCTAT TGGCTGCCTCGCTTCACCTGTCATGAAAAGTAAGATCCAAACCGATTCAG TACATACCATACGTATCAGCTACTCTGTAAATAGTAAATAGTAATTAGCA ACAGCGCTTGGTGCGAGCTATGATACGATCGCACGCCTTCACTCGTCTTG GAGTGGGAATAGTGACTCCCTTTGGGCTACAGAAGCAACGAGCATAATGT ATCGCTTTTGACAGCAGGCAGTCTAACTCTCCGATGCTACACAGTTACAG TTGTGATGCCTCCAACTCCGCCGAGCTAACCAAAACCGCACCGTCCGCTG CACTGCCTACTCCGAAACAAGTCGGACGACTTTCTCAGCTGGCTGCTCGT TCACGCGGACACCATCGACCCCAAGCTCAAGCTCGACGAAGACGAAGCCG ACGCGGACGCCGCGAAGCCCGAAGCCAATGCTGCTGCCGGAGAGGGGAGC GGGACCAGCAGCAGCAGCAGCAACGCTGTGGCACCCCTACAAGAATACCC GGGCGGCGGGCTTTCGACCATCTTGGGGGCGTTCGCCTCTCCGCCGGCAT CAACCCTGGCTCCTGCAGAGGGCACTGCCGTGGCACCGGGCTGTTTGGCA GCGAGTATAACGCCTCCGTCGAGCACAGCTCACACTTGGGCGATCGCGGG GCCGGGACCGGTAGGAGTGGTTGGGACGGGCGCCGGAGACTATGCCGGTG GGGAGGGCGGTACTCCTGGTGCGGCGAGCGACTTGCACGGGCGGTTGGCG GCGGCTGGAGGGATTCCGTCGGATCCTGTTTTGGCGATGCAGATGGGCGC TCGGATGGCGCTCGCCGGTGAGTATTTAGGTTCCCCGTGCGTCACTCGTA CGAGGCGGTGTCTCGGTTGTTCTGGGTGGGACCAACCGGGCGGCCTGGTG CGGGGTGCTTTCTTTGGTGCTCCGGTTGGGTGGATTGGTTCGACGTGTTC GGTTTTGAACTTGGCATTTGGGGTCTGTGCGAGGTGCCCGTTGCCGCCCC GAAGCTGAGGCGCCAATGGCGGCTATCTTAGCTGCGGCTACGAATTCGGT GCATGTCGCCGCAATACCTGCTAGACGTGTGCAGCGCAGATCGGGGACTG GTGCTACGTGCGGCGGGTGCCCCACACAGCTAGATACCGTAGAGCAGAGA TGAAAACATTTTCCTGCCGGCAGTTTTCTGATTGCTTGGTGTTTGCTCAA CAAGGCGCGCTAACCACGCCCGTTCTTCCGCGTCCGATGCGAATGGCTCA TTGCCAAGGAGCCTTGCGTAACCCTGGTGTCTGACGGGGGGCAGCGTGTT CAGACACCCGTACACCCTAGGTCCCAATCGAGCAACCGACGCAGCAATCC TTAGGCACGCGCGCTCGACGCAAAGAGAGTCCATGAAAGCAGTCCCGCAT CTGTTCGAGTTCGTGGATTGCATTTCCGCGATGCGGGGCCAGGCTATGCG GCCACAAGGCGTGTAGTGCATGGAGCAGCCCCCAACCCACCGCCTTCTTG GGTGTACTTGCCCTCAACAGTAGAATGCAACGCCCACGACCGAAGACTGC GGGAACAGGATAAATTTTCGATTAACCTCGACTGTTGCAACCGTCAAAGG AATATGTGCTGCCTTTGCCGATCGCAGGAAACCTCAACCTTATCCCGTTC GGGATGGGTAGTGGCGCGGGAACCACCGGTGCTGACGCTAGCACCGCCGT CGCGCCAGCACCACTGCAGCCCGATGTGAGCACGCAAACGGAACGCTGTC GCCTCAAACAAGTTTTTTATCGGGCGGTCATGACTTTGATTAATAGACAG TTGTCTTGGGGGCACCCAACTTGTGCTGTGCGCTGGTTCGTCTTGTAAAG AGCTCGGGCTGTGGCCAACACTAAATGTACATGTTTGAAGTGTTCGCTGT CCTTCAAACAACTGAGCAAAGGATCGTATTTACTCTGTTGTCGTTTGGGG TTCATTGCACGGTGTCGATTCGGCCCTTTTAGCCACTTGTGTTTGTCGCC TGTTCGGACCCAGTAAAATCCACCCATGATAGGGCAGAGGAGACTTCGCC TGGTCTCTGTCTACGCCCAGCATGTCCCGTTCCGCGCAACCCGTGGCCCG CGAACATGCCTCGCTGCGTGTGCTCCCACGTTCAGCCAGAGTATGGCACG TAGGGCATCTCCGACGACTGCTACCCGTGGAACCCCACAAACCCTCTGAC GTTTTCCTTCCTCAACACGGAATGCCCGCGCGTGCCCCGCGACGCAAATC GAACAGGGACACGCCTTGCAGCAAGGAGGTGCAGCTTTAACACCAACCGG CACCAATTGCCCCGCACATACACCGGCCACCCAAACCGCCGGACTTCCCG CATGGACCAGCTTTCCACCTCCGCCAGAGTGGTCCAAAGTGGAGCAATCG ATTCCGCCAACCGCGGTAGGGGTTTCCAGCACGGGCGAGGCGTTCGGTAC CCGAGGTGGAGCGGTGCGGGACGGCTCGGCAGTGGAGGGTTTCGAAGTGG GGCTTGCAGGGCTTGGCAGCGGTACGGATGGTGCCAATGTCGGCGATAAA CGGCCCAGGTAGGGGGAGATCCGCCGACTGCTCGGTGGTGGAGTTGGCGT GCTTTGTCTAGCGTTGCTTCGGAACTGTACAATGAGCGTGCTGTAGTGCA GCCGCTGGCTGCGAGAGAATGCGCCGTGCGTGTTGCCGCTTCTATTTCGA GAGACATTCGTTTCCTGCGTTGGGTGTGTGTGTCTCTGGCGTGTGCACAT GTGTTTGTGTGTGTGTGTGTGTACCCCCTGTTTTACAGCGGTGACTGTCA CGTGGCGAATGTCACGTACCGGCAGGACACTCTCCTTGTTACGAGTTCCT TTTGTTTAACACGATGTCGAATCTCGCGTATACAACGGCACATCAGCCAC GCTGCGGATCATTCACCGACTTCCTAGGCAGCAATGGCCTGGCATGTTCC CTGTACAAACACACGCACGATGAAAGAAGCGCCGCTAAGCGCTTCGTCGC GGATGGTGCTCACTTTTCACCTGCCACCTTCCGTATTCCTCTGACGTACC GTATGATGCATGCGGGAAAAACCACCATTGATTTGACCAACTCAAACTTT CGTTGCTGACCTAAAACCTCTGTCGCGATTTCTTGGGCTCCGCTCTGGTC CACAGGGCATCCTCGACTGCTGGGGAATCGAAGCCTGGACGTGACACGTT CAAGGATGGTCGACGGCGAAAACGAATGAGCGCCGGGGAGCTGGAGGTGA GGGCCAAGGAGCTCCGCAGCTTTCACCGGCTGTTGCGTTTGGCATTTCCA CATCGGTACCAGCAGGGCGGGAGTTTTTTATTGCTTCGTAGCTTTGTTGC GCACTCGTTATAGCCGATGGTTTAGAAATACAAAACGAGTAAGCTGACCT TGAGTCTAACCTCTCTCGGTAGATACCTAGTGCTTGCCGACAGTGTGATG CCGTAAGCGCGCGCAGAAACCGAGGGGTGCAATGCCTGGCGCGGTCTGGT CTGCAATCTGACGGGCACCTGTCGGAAAGAGCTCTACAAAGAACGGGCAG GCCACGCTAACCACATAGAATTTCATCCCGACCCTCTGCTTGTTTGTACT TTGCGTCGGGGTGGTGGTGTTGGCTCTGGCAGGAGCGAGTGAAGCAGGTG TCCGAGGACAACGGTCGACTCAAGCTCCATGTGAGTGCGTCGCTTCTGTG GCTGCTTCTGCTGCTGTTGCCGCTGCCACTGTTGTTGTTCGGGATACCTC AATTTACATTGGTTAAGCGTTTCGGATTAAAATCCCATACGCAGCGGGCT GTGTAAGGGAGGTAGTGAAATCGGTGGTCGGTTCAGAGCCCCGTTCCGCC TGTGCGTGACGGCCAAGCCGAGTCCCGTCTGCCACCGGCGCTCCATAAGG TGCAGCCGATCAATCCGAGCAGCAATGCTGCGCCCAATGCCCGGTATAGT CGAAGCGCGAGCCGGGAAAAGACGCGAGCACCCTTTGTGACCGCAGACGG GGTCTACCCTAGGCCGACGACTTACAAATATTTACAGGAGTGTGGTCGGG CGAGGGGGGGGGGGGGGTTGATTTTGCTAGGAGAAAAGCGGCTGACTTGT GGTTTTTCACCCTTACCAACTGAGGTCCTATGCCCTCGAACGCAGAGCGC ATACCGCAGGGCAGTACAGGCGCACGCACATGTTATCAAGTTTCCCACAA AAGACGGTGTGAGGTTGTTTGAGGTGGTTTTCTTGCTTTATCGGCTGCCG CCAAGAAACCCTGTAGATAACCGCCCGCGCGAGCGTGGAAGGCGTCGGTT CCTTGACAAGGCGTTTCGGTACAAAAAATGGCCAGCCGGGTGTAGCCCTA TAGTTCTCGGCGGCGCCAATACTACAGCAGTTGCATTGTGTCGGTATATT CTGTTATGGTAGCTGCTTGACCAGTCGACCCGCAATTAGCGGCACGTCGA ACGCTTGTTTGACGAAATACCGCAACTCGTCCGTGTCATAATTTGTGTGT GTATGTGTGTTTTTTTTTTTGCGTGTGGCGAAAATGCAGCTGTCAAACGT GAACGATAAGCTGAAGCTGATGGCCACCAGAAAGAAGGCCATGGAGGCGG AGATTGCTGCAAAGGTCAGTCATAACTGTAATAGTGTAGTTCCGCCATCA ACGTGACTGCGTGCAACCTGCGTGCTCTTGTTGGGGTTTTCTGCAATCAC GTTGCGGACTTTATTTGAATAGTTTTCGCATATGCTCTCGGTAAGCCAGG GATTTCCGTGAAGCTTAGCTCCTTCTTTCTTCCATTTTAAGCCTTAGCTG AACGCGCATCGGCTCAGCTGGTTTGTAGTTCCTACGTCCATCTCCGGGGT AATACTGTTAGAGGTCGAAATGGAGGGCATATCGACCACAATTTCGTGTC TCGGGCTTTTCGAAAAAGGCGTATGACACTGCCAATAAACACAAGTGGCA TGTTTTTGGCGACGTTTGCAAGTTACTTGAGAATAGAGTACAGAGCGTCC CGAATTTGTGTCGAATTTCCGGCGACACAGGCGATGAATTGGTCCTTGCG GTTCAACATGGGCCTGCTCATAGGTCAAGTGTATCAAACGAGAAGAGCAC ATTTTTTATTAGACCTTGTGACACGAAATACGTACCGAAAACTACCAAAA TCACGCGTTTTTAGTGCGTTTGCTCTTTGCATGACTTTGCCAGACGAAAA AGTCAAAAATATGTTATTTTTCGTTGATAGCTTGGGTTGCATGTGACACA GAGCACAATTCCGCACCTCAAACAAATATATGGCCGACGAGCACTCGCGC GCACAAAATGACCAGTTGGAGGCCTTGTAGACCAGATGATAAAAAACAAA CTTGAAAAATGAATGAAAACACCGGCCGAGACTGCTGCTGCCGTATACTG TACAGCAGTATACTTGTACGATTTCCCAGGTCGTTCAGAAAAAATTAGTG ATCCAAAAGGGCTACGCATATACAAGGCACGTATTATGTAATAATAGTAT ACAGGCAAAGCACGACCAAGGCAGAGGTAGGTGCGCACGCCAACGTCGTT GAGAGAGGGCCGTGGAGTGCTAGAGAGACCGTGCACTGCGCTAGCCAGCG CTGTGAGAGCCACAGATCGATTACCTGTTGCAACAGGTTGCCGCGCAAAG TTGTTCGTGCTGCGATGCCCTGCCATTCTAATAATAAGATACAAACTGCA GAAAAAAACGTTTAAAGTGTCATAATTGCATTGCGATTACGTGAGTCTTT GTGCAGTGGTGGTTGGCCAGTACCAACAGTGTTTTTTCTTTTTCTTTTTT GACTGACATAATTTGGGCTATAGTTGGCTCTATTAGCCCTCCATTCCGTG CAAATCAAATCAAATCAAATAAAAAAATCAAATCCGACCCTTTACTGTGC GATTTTCCTTCTCCCAAAAAAGAGAGAGAGAGAGAGGGATGCACACGACA TGGAACACAAAGAGTCCCCCCCCCCCCCGCCCCATGTAGTGGCTGAATGC CCGTTTTATGAAAAGGGGAGAGAAGTATACACGGCTGAGCTGGGAAAAAT GCAAGGCTGTGACAGAGAGACGTTTGAAGCGTGGGACAGCCAGGCGAAGG CGGTAGCTTTACTAGGGGATAAGAAGTGGCCTAAGAAGGCGATAAGTGAT GTGGACAGGACGGGAAAACATTTTTGCGACACCTTTGGCAGGGTAGGAAG GAACGATTGGTCATCGGCGATCGATCCTGCGGGAACAAAACTCCGTCCTC TCGAGGACGCGTGTTCAATGGTCTGACAACTTAGACATGCAAAACATGAG TACGCCCCTCCCCCCCCGCGCTCCCCGCCAAAGATCCATGTATCGCAACT TAAACTCGTCGTCGGGCAACTCTCTGTGGAGCGTTTGTCACTAAAGACAA GTGTTATGAGCATTTCGGGGGGCATAGGCATAAGCGCCGCCACGTTTTCC CCTAGGCTACCGTTTCGATCCAGATGCACAACAAAGGTAAGCAGCGGCCC TGAATGGGTGCAGTTGTTGACCGCTGCTTACTTACGGTATACGACGAGCG AGTGGAGCAGATTATTCGCGTGTTGGGAGGGAGATGGTGAAAGTTCAGTG TATTTTAACAGGCCATACCAGCCGCTTTACAAACAACCTCGACGAACCCA GCCGTAGCGAAAAATCTACATTCCGATCAACATAACAGAACAGTGCCCAA CCGTTTGTGCGATTCTCTCCTCACACGCTGGCCACATGGCAGTTGAATAC GCAGCGGTCGGTGCCGAGCGAAGCCAATACCGCTAGCTTGGCGGAGGCTC TGTCTCGCTTCAAGGACCTCTACGCGGACTACGGTGCTCAACGAAAGCAA GAGGCGAGTGCCGTAGGCCGCTGGCAGGGCAGCGTACCTTCCCGGCCCCT CTTCGAAATATGTGATAGCAAAATCGCAATCGGTGGACGCGCGTGTAGCG TGTTTGAACGCCTGCTGTATGGAAAGAAAATAACCCGGCGATGCATGTAT CGGTTTACTGCAGTAGGTGGGCGATGCGGCCGCGAATTGGCGACGGTATT TTAGAACTCGCGGCGCTCGTACTCATAGGAGTAGAGAGCGCCAAAACGGA CAATGTGTTGCCGTGGTCGCACTTTTTACGGATGGGCGTCAAATTCAGCC GGTTTAACGGCAGTGATGATTCGGCGCCAATATCGACAAGTGTTGCACAG AAGGACGATCAAGGCCGCAAGATTCGCTACGGCTTGTTGAATCACAAAGG CCACATTCGGCGCGTTCACGCAAAGGCATTGATCGAAGTACGCATCGTGG TGCTCTTCCCCGTGGATGCAATCGTTCGAGCAGAACCCGATCCCTCGAAT TGCTTTGCGCTGCGCACCCGTAATCGTCAAGCGGTGGTATTGCCTTGATC CGCGCCACTAGTTAATAGAGATGGAACCCCACCAATCTCTAAATGAGAGC TGTAGTGCGCCCATGGACATCGAAACTGGCAATTTTCCCGCAGGTGGAGT TCCACTTTAAGCAGCTGGAGAGATTAATCGTGCCCACGGACACGACGAAG ATGAGCCTGTGGACCCTGGAGCAGGACGAATCGTTCTACAAGGATCGGAA ACGGGGCGGCCTCAGCTTTATCCTTCGTGACGAGCTAGGGTGAGAAACAA CGGAGACCGCCAAGCACGCGAGTACCGCTGTATTTGGGAGTGCCCAGGAA GCCAGTGGCCCTCTACCGTGGTGCGGATAAAATTTGTCGGCTGGTGGTAT CTATAGTTTTTTTTTTGTCTTTGCTCGTCGTTTCTAATGGAATATTTGCG TCGAGGTTGGGCGAGCCGCACGGACGACAGATGGAAACTGCACCTTCCCC ACTAACACGGTGTCGTGTTGTTTCCGTGTTTCTATGTCAGTGTGAGCGAG GAGCAAATTGCACGCATTCAGGAGCGAAGGACAAGGATCAAGAGCCTCCT CGCCGAGCTGCGGGAGTCGCTTCGCCTTGTCAAGAATCTGCAGAAGTCGA GCGAGGTAACCGTTTTCAAGAATCCGCCGTTGTGGAAAGTAGAGCGGGTA CTTCCTCCACTAGAGTGTTCGTCGACGATGCGACGGCGGTACGTGTGTGC TCGAGCTTTCGCATCACACAGCCCAAGCGCATTATGAGTGCCTCTATCTC TGTGCGTGGGTCGGCTGCGCGCACGGGTGTGTGTGTGTGTTTGCATCCAT CCAATTTCGGCTCCGCTGCGTGGGAGTTCACTTCTTTTAGCGTTTCGGTC AGATGCAACAGGTTGCCGTGATCCACTCTTATCTGTGCAAGCACTGCCCA CGTTGTTCAGCACAATCCCGGTTACACGAAATCCCGATCAAAGACAAGAT TTGCACGTCGCCCTGGTCTATATTTCGTTTTCCAGTCATGCAAAACTCGC ACCTGACTGCGAATCCACAACTCCCCCCGAAACACACACCAGGCCAAAAG CGCCAAGTTCGAGGAGGTCATGGCGAGACTTCAGAGCTCCTTCTCGCCGC AGCAGATCGCGAGGTTGCTCCTTTGGGTGTCCACCAACCGTGCGCACATC TCCAAGCTGCCTCTTCTCCCCAAGGACATCTTGCAACAGCGCGCGCTTGT GAAGCATGAGACCTAGATTGGTGCTCGCAAGGCTATACATAGAGGGCGGG GGGTGGCCAAGCTTGTGCCGATCAGCTTCCCGTGTCTTTCGGCAGCCTCA GGGACAGGATAGCTTTGAACGGGCCCGGGCTAGTGTAGACTTAATTTGTA TGCCAGCGCTTCTTGAAGATTCCGTGATGTTGCCCCAAGCGTTCGCGATA GCGATAAAATGGGGCTCGCATCAAGTTCAGGGGTTGTATCGTGGGATGTA TAGTGCATAATATGAGTAACCGGCGAGACATCTATGTAGGAACCCAGTCC GCGCAAACATGGAAGGGTTATTACGAGGGAGAGCAGGAGAAGCCCTTGTG ACCACACACTGCTAGGGTCTGGAGTTGGTCGGTCATTTCAGAAGTAGAAT ATAGGGGGGTTACGATTAAGCTCAATAGCTGAGAAAATACTGTAGCGACA GCGTGCACCCCACGCTCTTTCTTCGTACTGTGTGGTTCATCTTCCGGTCT ACGTCACCATGACAGCATTTATCGACACCTTGGTAGCCGTGTTCCGCACA CGTATGCGTGTGTGGGCGTCAATTGAAGCCGTGCCCAATACGTGAAATGT ACAGATCATCCAAGCATGCAATGACACGCGTGGGCGTCAACCATTTGCTA TCCTACTACAGTAATTAGTCCTGATCATCGCGGTCGTTGTATGCGCGTGG AGAGTCGTGCGTACCTTTAGGCATTTCTGGTGCACGCCGAAACATCTTCG GCGCTTATGAACGCCAACGCCAGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig833:10901..23724+

>mRNA_S-dermatodea_contig833.16517.1 ID=mRNA_S-dermatodea_contig833.16517.1|Name=mRNA_S-dermatodea_contig833.16517.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3600bp|location=Sequence derived from alignment at S-dermatodea_contig833:10901..23724+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCACCGCGGTGGAAACATGGAAGAAAGCTTGCAAGGCGAAAGCCTGTT
AACAGAAGACGATTTTAACGACTTCGCCGCGGCCGTAGGCGAAGGACTGG
ACGGGAGCGATGACGAAGCTAGCATGCACCGCGGTGGAAACATGGAAGAA
AGCTTGCAAGGCGAAAGCCTGTTAACAGAAGACGATTTTAACGACTTCGC
CGCGGCCGTAGGCGAAGGACTGGACGGGAGCGATGACGAAGCTAGCTCGG
ACGACTTTCTCAGCTGGCTGCTCGTTCACGCGGACACCATCGACCCCAAG
CTCAAGCTCGACGAAGACGAAGCCGACGCGGACGCCGCGAAGCCCGAAGC
CAATGCTGCTGCCGGAGAGGGGAGCGGGACCAGCAGCAGCAGCAGCAACG
CTGTGGCACCCCTACAAGAATACCCGGGCGGCGGGCTTTCGACCATCTTG
GGGGCGTTCGCCTCTCCGCCGGCATCAACCCTGGCTCCTGCAGAGGGCAC
TGCCGTGGCACCGGGCTGTTTGGCAGCGAGTATAACGCCTCCGTCGAGCA
CAGCTCACACTTGGGCGATCGCGGGGCCGGGACCGGTAGGAGTGGTTGGG
ACGGGCGCCGGAGACTATGCCGGTGGGGAGGGCGGTACTCCTGGTGCGGC
GAGCGACTTGCACGGGCGGTTGGCGGCGGCTGGAGGGATTCCGTCGGATC
CTGTTTTGGCGATGCAGATGGGCGCTCGGATGGCGCTCGCCGTCGGACGA
CTTTCTCAGCTGGCTGCTCGTTCACGCGGACACCATCGACCCCAAGCTCA
AGCTCGACGAAGACGAAGCCGACGCGGACGCCGCGAAGCCCGAAGCCAAT
GCTGCTGCCGGAGAGGGGAGCGGGACCAGCAGCAGCAGCAGCAACGCTGT
GGCACCCCTACAAGAATACCCGGGCGGCGGGCTTTCGACCATCTTGGGGG
CGTTCGCCTCTCCGCCGGCATCAACCCTGGCTCCTGCAGAGGGCACTGCC
GTGGCACCGGGCTGTTTGGCAGCGAGTATAACGCCTCCGTCGAGCACAGC
TCACACTTGGGCGATCGCGGGGCCGGGACCGGTAGGAGTGGTTGGGACGG
GCGCCGGAGACTATGCCGGTGGGGAGGGCGGTACTCCTGGTGCGGCGAGC
GACTTGCACGGGCGGTTGGCGGCGGCTGGAGGGATTCCGTCGGATCCTGT
TTTGGCGATGCAGATGGGCGCTCGGATGGCGCTCGCCGGAAACCTCAACC
TTATCCCGTTCGGGATGGGTAGTGGCGCGGGAACCACCGGTGCTGACGCT
AGCACCGCCGTCGCGCCAGCACCACTGCAGCCCGATGTGAGCACGCAAAC
GGAACGCTGTCGCCTCAAACAAGAAACCTCAACCTTATCCCGTTCGGGAT
GGGTAGTGGCGCGGGAACCACCGGTGCTGACGCTAGCACCGCCGTCGCGC
CAGCACCACTGCAGCCCGATGTGAGCACGCAAACGGAACGCTGTCGCCTC
AAACAACAAGGAGGTGCAGCTTTAACACCAACCGGCACCAATTGCCCCGC
ACATACACCGGCCACCCAAACCGCCGGACTTCCCGCATGGACCAGCTTTC
CACCTCCGCCAGAGTGGTCCAAAGTGGAGCAATCGATTCCGCCAACCGCG
GTAGGGGTTTCCAGCACGGGCGAGGCGTTCGGTACCCGAGGTGGAGCGGT
GCGGGACGGCTCGGCAGTGGAGGGTTTCGAAGTGGGGCTTGCAGGGCTTG
GCAGCGGTACGGATGGTGCCAATGTCGGCGATAAACGGCCCAGCAAGGAG
GTGCAGCTTTAACACCAACCGGCACCAATTGCCCCGCACATACACCGGCC
ACCCAAACCGCCGGACTTCCCGCATGGACCAGCTTTCCACCTCCGCCAGA
GTGGTCCAAAGTGGAGCAATCGATTCCGCCAACCGCGGTAGGGGTTTCCA
GCACGGGCGAGGCGTTCGGTACCCGAGGTGGAGCGGTGCGGGACGGCTCG
GCAGTGGAGGGTTTCGAAGTGGGGCTTGCAGGGCTTGGCAGCGGTACGGA
TGGTGCCAATGTCGGCGATAAACGGCCCAGGGCATCCTCGACTGCTGGGG
AATCGAAGCCTGGACGTGACACGTTCAAGGATGGTCGACGGCGAAAACGA
ATGAGCGCCGGGGAGCTGGAGGGCATCCTCGACTGCTGGGGAATCGAAGC
CTGGACGTGACACGTTCAAGGATGGTCGACGGCGAAAACGAATGAGCGCC
GGGGAGCTGGAGGAGCGAGTGAAGCAGGTGTCCGAGGACAACGGTCGACT
CAAGCTCCATGAGCGAGTGAAGCAGGTGTCCGAGGACAACGGTCGACTCA
AGCTCCATCTGTCAAACGTGAACGATAAGCTGAAGCTGATGGCCACCAGA
AAGAAGGCCATGGAGGCGGAGATTGCTGCAAAGCTGTCAAACGTGAACGA
TAAGCTGAAGCTGATGGCCACCAGAAAGAAGGCCATGGAGGCGGAGATTG
CTGCAAAGTTGAATACGCAGCGGTCGGTGCCGAGCGAAGCCAATACCGCT
AGCTTGGCGGAGGCTCTGTCTCGCTTCAAGGACCTCTACGCGGACTACGG
TGCTCAACGAAAGCAAGAGTTGAATACGCAGCGGTCGGTGCCGAGCGAAG
CCAATACCGCTAGCTTGGCGGAGGCTCTGTCTCGCTTCAAGGACCTCTAC
GCGGACTACGGTGCTCAACGAAAGCAAGAGGTGGAGTTCCACTTTAAGCA
GCTGGAGAGATTAATCGTGCCCACGGACACGACGAAGATGAGCCTGTGGA
CCCTGGAGCAGGACGAATCGTTCTACAAGGATCGGAAACGGGGCGGCCTC
AGCTTTATCCTTCGTGACGAGCTAGGGTGGAGTTCCACTTTAAGCAGCTG
GAGAGATTAATCGTGCCCACGGACACGACGAAGATGAGCCTGTGGACCCT
GGAGCAGGACGAATCGTTCTACAAGGATCGGAAACGGGGCGGCCTCAGCT
TTATCCTTCGTGACGAGCTAGGTGTGAGCGAGGAGCAAATTGCACGCATT
CAGGAGCGAAGGACAAGGATCAAGAGCCTCCTCGCCGAGCTGCGGGAGTC
GCTTCGCCTTGTCAAGAATCTGCAGAAGTCGAGCGAGTGTGAGCGAGGAG
CAAATTGCACGCATTCAGGAGCGAAGGACAAGGATCAAGAGCCTCCTCGC
CGAGCTGCGGGAGTCGCTTCGCCTTGTCAAGAATCTGCAGAAGTCGAGCG
AGGCCAAAAGCGCCAAGTTCGAGGAGGTCATGGCGAGACTTCAGAGCTCC
TTCTCGCCGCAGCAGATCGCGAGGTTGCTCCTTTGGGTGTCCACCAACCG
TGCGCACATCTCCAAGCTGCCTCTTCTCCCCAAGGACATCTTGCAACAGC
GCGCGCTTGTGAAGCATGAGACCTAGGCCAAAAGCGCCAAGTTCGAGGAG
GTCATGGCGAGACTTCAGAGCTCCTTCTCGCCGCAGCAGATCGCGAGGTT
GCTCCTTTGGGTGTCCACCAACCGTGCGCACATCTCCAAGCTGCCTCTTC
TCCCCAAGGACATCTTGCAACAGCGCGCGCTTGTGAAGCATGAGACCTAG
back to top