mRNA_S-dermatodea_contig8310.16496.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8310.16496.1
Unique NamemRNA_S-dermatodea_contig8310.16496.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8310.16496.1 vs. uniprot
Match: D8LFE0_ECTSI (DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE0_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 9.140e-24
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 YGAYLLACYDPDREEYQSVCKIGTGFTDEILLSFWTELKEHTIEKRPR 144
            YGAYLLACY+PDREEYQSVCKIGTGFTDEIL SFW ELKEHT+E+RPR
Sbjct:  894 YGAYLLACYEPDREEYQSVCKIGTGFTDEILNSFWEELKEHTVEQRPR 941
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BLAST of mRNA_S-dermatodea_contig8310.16496.1 vs. uniprot
Match: A0A068S0M9_9FUNG (DNA ligase n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068S0M9_9FUNG)

HSP 1 Score: 75.9 bits (185), Expect = 7.820e-15
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 YGAYLLACYDPDREEYQSVCKIGTGFTDEILLSFWTELKEHTIEKRPR 144
            YG++LLACYDP+ EEYQ+VCK+GTGF+DE L  F+T+L EH I++  R
Sbjct:  582 YGSFLLACYDPETEEYQTVCKLGTGFSDENLQKFYTDLNEHKIQQPKR 629
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BLAST of mRNA_S-dermatodea_contig8310.16496.1 vs. uniprot
Match: A0A836CMS0_9STRA (DNA ligase (ATP) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMS0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.820e-15
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 YGAYLLACYDPDREEYQSVCKIGTGFTDEILLSFWTELKEHTIEKRP 141
            +GAYLLACY+PD EEYQSVCKIGTGF++E LL+    LK H IE++P
Sbjct:  500 FGAYLLACYEPDAEEYQSVCKIGTGFSNERLLALDAMLKAHVIERKP 546
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BLAST of mRNA_S-dermatodea_contig8310.16496.1 vs. uniprot
Match: A0A8H8SIR2_9AGAM (DNA ligase n=3 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8SIR2_9AGAM)

HSP 1 Score: 75.5 bits (184), Expect = 1.070e-14
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 YGAYLLACYDPDREEYQSVCKIGTGFTDEILLSFWTELKEHTIEK 135
            YGA+LLACYDPD EEYQ++CKIGTGF+DE L + + +LK H I K
Sbjct:  664 YGAFLLACYDPDAEEYQTICKIGTGFSDEALAAHYAQLKPHEINK 708
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BLAST of mRNA_S-dermatodea_contig8310.16496.1 vs. uniprot
Match: A0A8K0AK21_ANDGO (Mitochondrial ATP-dependent DNA ligase n=1 Tax=Andalucia godoyi TaxID=505711 RepID=A0A8K0AK21_ANDGO)

HSP 1 Score: 75.1 bits (183), Expect = 1.460e-14
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 YGAYLLACYDPDREEYQSVCKIGTGFTDEILLSFWTELKEHTIEKRP 141
            YGA+LLACYD DR+EYQS+CKIGTGF++E L  F   LKEH I  RP
Sbjct:  698 YGAFLLACYDSDRDEYQSICKIGTGFSEEDLQKFTDLLKEHVIPARP 744
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BLAST of mRNA_S-dermatodea_contig8310.16496.1 vs. uniprot
Match: A0A1C7N288_9FUNG (DNA ligase n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N288_9FUNG)

HSP 1 Score: 75.1 bits (183), Expect = 1.460e-14
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 YGAYLLACYDPDREEYQSVCKIGTGFTDEILLSFWTELKEHTIEKRPR 144
            YGA+LLACYDP+ EEYQ++CKIGTGF+DE L  F+  LK H IE+  R
Sbjct:  588 YGAFLLACYDPETEEYQTICKIGTGFSDENLQLFYNTLKNHVIEQPKR 635
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BLAST of mRNA_S-dermatodea_contig8310.16496.1 vs. uniprot
Match: K5XK36_AGABU (DNA ligase n=3 Tax=Agaricus bisporus TaxID=5341 RepID=K5XK36_AGABU)

HSP 1 Score: 74.7 bits (182), Expect = 1.990e-14
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 YGAYLLACYDPDREEYQSVCKIGTGFTDEILLSFWTELKEHTIEK 135
            YGA+LLAC+DPD EEYQ++CKIGTGF+DEIL S + ELK   +EK
Sbjct:  681 YGAFLLACFDPDSEEYQTICKIGTGFSDEILQSHYNELKPLELEK 725
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BLAST of mRNA_S-dermatodea_contig8310.16496.1 vs. uniprot
Match: A0A8H7SSV5_9FUNG (DNA ligase n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7SSV5_9FUNG)

HSP 1 Score: 74.3 bits (181), Expect = 2.720e-14
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 YGAYLLACYDPDREEYQSVCKIGTGFTDEILLSFWTELKEHTIEKRPR 144
            YGA+LLACYDPD EEYQ++CKIGTGF+DE L  F+  LK H I+   R
Sbjct:  537 YGAFLLACYDPDTEEYQTICKIGTGFSDENLQLFYNTLKTHVIDAPKR 584
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BLAST of mRNA_S-dermatodea_contig8310.16496.1 vs. uniprot
Match: A0A1X2GRM5_9FUNG (DNA ligase (Fragment) n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GRM5_9FUNG)

HSP 1 Score: 74.3 bits (181), Expect = 2.720e-14
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 YGAYLLACYDPDREEYQSVCKIGTGFTDEILLSFWTELKEHTIEKRPR 144
            YG +LLACYDPD EEYQS+CKIGTGF++E+L +    LKEH I K  R
Sbjct:  516 YGTFLLACYDPDTEEYQSICKIGTGFSEEMLQTIHQRLKEHIIPKPKR 563
[Close]
BLAST of mRNA_S-dermatodea_contig8310.16496.1 vs. uniprot
Match: A0A261Y452_9FUNG (DNA ligase n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y452_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 3.720e-14
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 YGAYLLACYDPDREEYQSVCKIGTGFTDEILLSFWTELKEHTIE 132
            YGAYLLACYDPDREEYQ++ KIGTGF+DE L + +T  K+H I+
Sbjct:  612 YGAYLLACYDPDREEYQTITKIGTGFSDEALSTHYTFFKDHVID 655
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8310.16496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFE0_ECTSI9.140e-2489.58DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A068S0M9_9FUNG7.820e-1562.50DNA ligase n=2 Tax=Lichtheimia TaxID=688353 RepID=... [more]
A0A836CMS0_9STRA7.820e-1568.09DNA ligase (ATP) n=1 Tax=Tribonema minus TaxID=303... [more]
A0A8H8SIR2_9AGAM1.070e-1466.67DNA ligase n=3 Tax=Ceratobasidium sp. AG-Ba TaxID=... [more]
A0A8K0AK21_ANDGO1.460e-1468.09Mitochondrial ATP-dependent DNA ligase n=1 Tax=And... [more]
A0A1C7N288_9FUNG1.460e-1464.58DNA ligase n=1 Tax=Choanephora cucurbitarum TaxID=... [more]
K5XK36_AGABU1.990e-1468.89DNA ligase n=3 Tax=Agaricus bisporus TaxID=5341 Re... [more]
A0A8H7SSV5_9FUNG2.720e-1464.58DNA ligase n=1 Tax=Thamnidium elegans TaxID=101142... [more]
A0A1X2GRM5_9FUNG2.720e-1464.58DNA ligase (Fragment) n=1 Tax=Hesseltinella vesicu... [more]
A0A261Y452_9FUNG3.720e-1468.18DNA ligase n=1 Tax=Bifiguratus adelaidae TaxID=193... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8310contigS-dermatodea_contig8310:8958..9104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue1.7e-19
Seed eggNOG ortholog2880.D8LFE0
Preferred nameLIG1
KEGG rclassRC00005
KEGG koko:K10747
KEGG ReactionR00381,R00382,R10822,R10823
KEGG Pathwayko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430
GOsGO:0000012,GO:0000228,GO:0000278,GO:0000302,GO:0000726,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006297,GO:0006298,GO:0006302,GO:0006303,GO:0006304,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009636,GO:0009653,GO:0009987,GO:0010035,GO:0016043,GO:0016070,GO:0016874,GO:0016886,GO:0022402,GO:0022616,GO:0031974,GO:0031981,GO:0032502,GO:0033260,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0035510,GO:0035753,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043570,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044728,GO:0044786,GO:0046483,GO:0046677,GO:0048856,GO:0050896,GO:0051103,GO:0051276,GO:0051716,GO:0070013,GO:0070988,GO:0071704,GO:0071840,GO:0080111,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1902969,GO:1903047,GO:1903461
EggNOG free text desc.DNA ligase (ATP) activity
EggNOG OGsCOG1793@1,KOG0967@2759
EC6.5.1.1,6.5.1.6,6.5.1.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925334.8759377-CDS-S-dermatodea_contig8310:8957..91041622925334.8759377-CDS-S-dermatodea_contig8310:8957..9104Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8310 8958..9104 -
1694079863.137527-CDS-S-dermatodea_contig8310:8957..91041694079863.137527-CDS-S-dermatodea_contig8310:8957..9104Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8310 8958..9104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8310.16496.1prot_S-dermatodea_contig8310.16496.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8310 8958..9104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8310.16496.1

>prot_S-dermatodea_contig8310.16496.1 ID=prot_S-dermatodea_contig8310.16496.1|Name=mRNA_S-dermatodea_contig8310.16496.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=49bp
YGAYLLACYDPDREEYQSVCKIGTGFTDEILLSFWTELKEHTIEKRPR*
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mRNA from alignment at S-dermatodea_contig8310:8958..9104-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8310.16496.1 ID=mRNA_S-dermatodea_contig8310.16496.1|Name=mRNA_S-dermatodea_contig8310.16496.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at S-dermatodea_contig8310:8958..9104- (Saccorhiza dermatodea SderLu1190fm monoicous)
TACGGGGCGTATCTGTTGGCATGCTACGATCCAGACAGGGAGGAGTACCA
GTCGGTCTGCAAGATCGGAACGGGATTCACGGATGAGATCTTGCTGTCGT
TCTGGACCGAGCTCAAGGAGCACACCATCGAGAAGCGGCCGAGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8310:8958..9104-

>mRNA_S-dermatodea_contig8310.16496.1 ID=mRNA_S-dermatodea_contig8310.16496.1|Name=mRNA_S-dermatodea_contig8310.16496.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at S-dermatodea_contig8310:8958..9104- (Saccorhiza dermatodea SderLu1190fm monoicous)
TACGGGGCGTATCTGTTGGCATGCTACGATCCAGACAGGGAGGAGTACCA
GTCGGTCTGCAAGATCGGAACGGGATTCACGGATGAGATCTTGCTGTCGT
TCTGGACCGAGCTCAAGGAGCACACCATCGAGAAGCGGCCGAGGTGATAC
GGGGCGTATCTGTTGGCATGCTACGATCCAGACAGGGAGGAGTACCAGTC
GGTCTGCAAGATCGGAACGGGATTCACGGATGAGATCTTGCTGTCGTTCT
GGACCGAGCTCAAGGAGCACACCATCGAGAAGCGGCCGAGGTGA
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