mRNA_S-dermatodea_contig8294.16481.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8294.16481.1
Unique NamemRNA_S-dermatodea_contig8294.16481.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8294.16481.1 vs. uniprot
Match: D8LE22_ECTSI (Probable glycine-sarcosine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE22_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 8.620e-27
Identity = 57/108 (52.78%), Postives = 76/108 (70.37%), Query Frame = 2 
Query:    2 TDLMKSDTAELGDLEEVFKHRRIKGIASPGLYRGWADDYGLEFVEFHDKTSDFAEHYSSILAQIASLRGTIEGVSDEHLDWMTTRYGAWVAAANNKVVTTGEVVMKKN 325
            +D M+SD A+   L EV++H  I  +ASPGLY  W + YGLE VEF D+TS+F+ HY  ++  IASLRGTI+GV DE LD MT+RYG+W  AA   V+  G +V+KK+
Sbjct:  160 SDFMQSDDADPTKLGEVYQHIGISRLASPGLYEEWGNAYGLEPVEFDDRTSNFSVHYQHLVDVIASLRGTIKGVDDEFLDRMTSRYGSWCVAAEFDVLRWGVIVLKKS 267
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BLAST of mRNA_S-dermatodea_contig8294.16481.1 vs. uniprot
Match: A0A6H5KF52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF52_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.590e-23
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 2 
Query:   50 VFKHRRIKGIASPGLYRGWADDYGLEFVEFHDKTSDFAEHYSSILAQIASLRGTIEGVSDEHLDWMTTRYGAWVAAANNKVVTTGEVVMKKN 325
            V++H  I  +ASPGLY  W   YGLE VEF D+TS+F+ HY  ++  IASLRGTI+GV DE LD MT+RYG+W  AA   V+  G +V KK+
Sbjct:   69 VYQHIGISRLASPGLYEEWGKAYGLEHVEFDDRTSNFSVHYQHLVDVIASLRGTIKGVDDEFLDRMTSRYGSWCVAAEFDVLRWGVIVFKKS 160
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8294.16481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE22_ECTSI8.620e-2752.78Probable glycine-sarcosine methyltransferase n=1 T... [more]
A0A6H5KF52_9PHAE1.590e-2354.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8294contigS-dermatodea_contig8294:5575..7323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue5.6e-23
Seed eggNOG ortholog2880.D8LE22
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2E18F@1,2S8KF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMethyltransferase type 11
Ec32 orthologEc-05_004340.1
Exons4
Model size784
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8294.16481.1prot_S-dermatodea_contig8294.16481.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8294 6364..7313 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925333.9681902-UTR-S-dermatodea_contig8294:5574..60301622925333.9681902-UTR-S-dermatodea_contig8294:5574..6030Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8294 5575..6030 -
1694079862.5377796-UTR-S-dermatodea_contig8294:5574..60301694079862.5377796-UTR-S-dermatodea_contig8294:5574..6030Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8294 5575..6030 -
1622925334.0148509-UTR-S-dermatodea_contig8294:7313..73231622925334.0148509-UTR-S-dermatodea_contig8294:7313..7323Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8294 7314..7323 -
1694079862.6329892-UTR-S-dermatodea_contig8294:7313..73231694079862.6329892-UTR-S-dermatodea_contig8294:7313..7323Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8294 7314..7323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925333.978871-CDS-S-dermatodea_contig8294:6363..65131622925333.978871-CDS-S-dermatodea_contig8294:6363..6513Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8294 6364..6513 -
1694079862.601109-CDS-S-dermatodea_contig8294:6363..65131694079862.601109-CDS-S-dermatodea_contig8294:6363..6513Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8294 6364..6513 -
1622925333.9950655-CDS-S-dermatodea_contig8294:6894..70231622925333.9950655-CDS-S-dermatodea_contig8294:6894..7023Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8294 6895..7023 -
1694079862.6122017-CDS-S-dermatodea_contig8294:6894..70231694079862.6122017-CDS-S-dermatodea_contig8294:6894..7023Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8294 6895..7023 -
1622925334.0048418-CDS-S-dermatodea_contig8294:7274..73131622925334.0048418-CDS-S-dermatodea_contig8294:7274..7313Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8294 7275..7313 -
1694079862.6230106-CDS-S-dermatodea_contig8294:7274..73131694079862.6230106-CDS-S-dermatodea_contig8294:7274..7313Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8294 7275..7313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8294.16481.1

>prot_S-dermatodea_contig8294.16481.1 ID=prot_S-dermatodea_contig8294.16481.1|Name=mRNA_S-dermatodea_contig8294.16481.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
MKSDTAELGDLEEVFKHRRIKGIASPGLYRGWADDYGLEFVEFHDKTSDF
AEHYSSILAQIASLRGTIEGVSDEHLDWMTTRYGAWVAAANNKVVTTGEV
VMKKN*
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mRNA from alignment at S-dermatodea_contig8294:5575..7323-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8294.16481.1 ID=mRNA_S-dermatodea_contig8294.16481.1|Name=mRNA_S-dermatodea_contig8294.16481.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1749bp|location=Sequence derived from alignment at S-dermatodea_contig8294:5575..7323- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGGACTTAATGAAGTCGGACACCGCTGAACTGGGCGATCTCGAGGAGG
TGCAGCGGTGCCGTGTCTTGATTTGTTTCCTTTTCGTAAAGTTGCCACCG
CGGAGGAGGTTGTGCTTAGTTGAGAGCGGGGTGTATCGTTATAAAAACCT
ACCCCAGCCAGCGAGGACGGACACTGTCTCTTTACCGGGTCGTGGCAGGG
AGCACTGCATCTACCAGTTACCCTCGCGAGTAGACTGGATATTCGCATTC
CGTTGCCGCCAAATTACACGGTGCGCATATCTTATTCGTGCCTTCGCCAG
GTTTTTAAGCACCGACGCATTAAGGGCATCGCTAGCCCGGGCCTGTACCG
AGGGTGGGCCGACGACTACGGCCTGGAGTTTGTCGAGTTCCACGATAAAA
CAAGCGACTTTGCGGAGCACTACAGCAGCGTGAGTGGCACACCGTCTCGT
CACCTCTTTGTCGCTTGAAGGATGGAATTATCAGCTTCAGGACAAGTTTT
CCAAGGCTAGACGAAACTCTTGAGGCGAGATTTGTCGAGTATCCTACTTG
CAGCGTCGGAAATATTCCACCGGGGATAGCAACTAGTATTTAGTTTGGTT
AGAACCGCGTAGAGTCCGTTCTCCGATCGTACGCGTGTTCCCTACACGGC
CACTTCAAGTCCGCTGCAGTCGTCTCTGTTCTTGTTTAGAACATTTGGCA
AGCTGCATTAGAATATTCGGGGCATATGTTTGCTTTTCCTACGGCGCCAC
TCCTCCTACACTAAAGCACCTACGATCGACTTTTGCGTAATTTGCGTATT
CCCCCCTCAGATTCTGGCGCAGATCGCGTCACTTAGGGGTACTATCGAGG
GCGTGAGCGACGAGCACCTGGACTGGATGACAACCCGCTACGGCGCGTGG
GTCGCGGCGGCTAATAACAAGGTTGTGACGACTGGAGAAGTGGTGATGAA
GAAGAACTAGGTGAGGTTTAGGAAGTTTGTAGATCAGTTTCCCCTTTGTT
CTGTGCTGTTTACTGAGAAATGCCGGGAGCACCAATCATGATTTGTTCGC
CATGGTGGTTTCACGCAAAGTCGTGTCTGCCCCGATTCTTGCAGTGCCGC
ATACCTCCCGGGACACATAATATATAATACGTGTCGCGAAGGGGCAGGAA
TCGAGCTGGAGAACTTGATGTCGCAGACAATACCAAAGCGGCATACCGAG
GCTAGAACATACAAACACGACGATGCTTGGCCGCTCGTTGGGACTGACAG
ACATTTTCGCTGCCCTTTGAAACGTATGGTTGTCTTCGATCAGGTTCGAT
ACTCGACAGTAGGTGCCTGGTACACGGGCATTCGAGCATTTACTCGGAAC
GAGAGCCTCTCGGAGCTTGGCCGGACAGGGGTGGACACGATATCGCCTGT
CCCCAGCTGGGCTGCATCCCTCGTCTGGTATTACATCCTTTCGCAAATAG
CCGAGCCACCGGTGTTCGCAGGCACCGTTCAGTGGTCTGCGTATATTTTT
AATTAGTTCGGAATGCGCTCGCACACCACGATGGTGCGATTTATGGGTCG
GTTTGCATCCTTGCTTGATAAAAACGTGCAGGATCCGGCGGGTCAAATGG
TGAATGTTTAGTACAAATATAGGCACGATGGCAGAAGGAAAGGGTGGGGT
TGGAAGACTGGATGGAAGTATATAGGCACCGTTGTTCGATGCGCGACGTC
CACGGCCTGTCTATAACAATCTACGACAAATGTGGACGACAAAGGGTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8294:5575..7323-

>mRNA_S-dermatodea_contig8294.16481.1 ID=mRNA_S-dermatodea_contig8294.16481.1|Name=mRNA_S-dermatodea_contig8294.16481.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig8294:5575..7323- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGTCGGACACCGCTGAACTGGGCGATCTCGAGGAGATGAAGTCGGA
CACCGCTGAACTGGGCGATCTCGAGGAGGTTTTTAAGCACCGACGCATTA
AGGGCATCGCTAGCCCGGGCCTGTACCGAGGGTGGGCCGACGACTACGGC
CTGGAGTTTGTCGAGTTCCACGATAAAACAAGCGACTTTGCGGAGCACTA
CAGCAGCGTTTTTAAGCACCGACGCATTAAGGGCATCGCTAGCCCGGGCC
TGTACCGAGGGTGGGCCGACGACTACGGCCTGGAGTTTGTCGAGTTCCAC
GATAAAACAAGCGACTTTGCGGAGCACTACAGCAGCATTCTGGCGCAGAT
CGCGTCACTTAGGGGTACTATCGAGGGCGTGAGCGACGAGCACCTGGACT
GGATGACAACCCGCTACGGCGCGTGGGTCGCGGCGGCTAATAACAAGGTT
GTGACGACTGGAGAAGTGGTGATGAAGAAGAACTAGATTCTGGCGCAGAT
CGCGTCACTTAGGGGTACTATCGAGGGCGTGAGCGACGAGCACCTGGACT
GGATGACAACCCGCTACGGCGCGTGGGTCGCGGCGGCTAATAACAAGGTT
GTGACGACTGGAGAAGTGGTGATGAAGAAGAACTAG
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