mRNA_S-dermatodea_contig8251.16450.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8251.16450.1 vs. uniprot
Match: D7FPJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ7_ECTSI) HSP 1 Score: 318 bits (815), Expect = 3.850e-95 Identity = 265/644 (41.15%), Postives = 329/644 (51.09%), Query Frame = 1
Query: 28 LLREAARTSQAEFLSTVLPAQEFKPLSGYAAPRSEPITPNPQLWSSLTDLAHK-PRRGSSD-GRAGG-----------APRSGSAV-----DDEALARWDSLQRLQDKSVGLGSAAEHQLGRALELCRALRGRKAGVGMNGETLSGHERASLVDALQSTLHGLGEVLSKRTHMDKAARREADALGGPATATSMLDDVEGG---RASTADLHAGNRVLVETAPMEGGARDPGAGWLTGAQLKAFRKQIEARSSLEIAALESERRKLRSKVEMFQRQVQFLQREGAGHSRIDPARQAATNGGGI--GRAVARLGEDGAGL-------AGEKRFADLLDARLGEERHLQATLQAEVNALRGTLEEKDGLI--------DAXXXXXXXXXXXXXXXXXXXXXXXEPLTPTRATENGDSRPHATNHGLAVPGRSVFAPSEG---RYRGRFHYRSSRLLGAAGPVAMAEAEAAARRVDAPRRATWSG--SAPVNFHRVEGHEVAEDAEMRPA-GDSSP----APPLPGGGKEVFPAADHPEEALAASDSTLVGSVDVHTGEHGALPPIXXXXXXXXXXSHAAAEGVKSSESGVVSRATG---GAFRLLWKSARAVGSNVGLGSGGSEGVDKSPASVPRLRGNSSHAVLIL 1806
++R+AARTSQA FLS+VLP Q+ + S P TP SL + H+ P G + GRA G A +GS V D +A ARW S++RL+D+ GLG+AA+HQL RAL+LCR LRG+KAGVG G +LS H RAS +DALQSTLHGL EVLSKR +DK AR EA+ALGGPA A S+L+D EG + T +G GWLTG+QLKAF K++EARSS+EI+ALESERRKLRSKVEMFQRQVQ LQREGAGHS PA + GG A A GE +G+ AGEKRFADLLDARLGEER +QATL+AE+ +LR T+EEKDGL+ A +P R+ + G P + + VPGR VF+P R RGR+H RSSR L A GPVA A R WSG S+ + + G + E+ P GDS+ P + A + ++S+AT A R+LW SA V S VGL G +G++ SP R G+SSHAVLIL
Sbjct: 35 IVRQAARTSQAAFLSSVLPTQDLD-FDTANSDSSNPFTPTTLPGISLPNGRHRSPVVGPGEPGRAAGLGGGGVSGLGAAISAGSGVGPTSSDTQAAARWASMRRLEDQGAGLGNAADHQLARALQLCRDLRGQKAGVG--GGSLSVHGRASRLDALQSTLHGLEEVLSKRRVVDKTARAEAEALGGPAAAWSLLNDDEGSVGDKDQTQVAASGRXXXXXXXXXXXXXXXXSGGWLTGSQLKAFEKKVEARSSIEISALESERRKLRSKVEMFQRQVQLLQREGAGHSPA-PANGSTGKIGGYPAATAAAATGEGDSGVGGGFGAAAGEKRFADLLDARLGEERIVQATLEAELASLRRTIEEKDGLVGALREALRSAATPASGGDASTARAGTLAEHGAAQPPARRRSAD-GILTPRSADGRAVVPGRGVFSPQSSDSSRSRGRYHSRSSRFLSAQGPVAAAXXXXXXVASRHERGGPWSGNSSSHGSTYVAAGEDRVEEIRRPPPIGDSNDDVDSEVPAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVRNRTGGDFSGRGTAPKIAEGNDDIISQATAMTSSALRMLWNSAWGVRSRVGL-DGSGDGLE-SPRKAQRKGGSSSHAVLIL 671
BLAST of mRNA_S-dermatodea_contig8251.16450.1 vs. uniprot
Match: A0A6H5KLE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE5_9PHAE) HSP 1 Score: 323 bits (827), Expect = 1.440e-94 Identity = 276/662 (41.69%), Postives = 339/662 (51.21%), Query Frame = 1
Query: 1 PRPAPLCLQLLREAARTSQAEFLSTVLPAQEF----------KPLSGYAAPRSEPITPNPQLWSSLTDLAHKPRRGSSDGRAG-----GAPRSGSAV-----DDEALARWDSLQRLQDKSVGLGSAAEHQLGRALELCRALRGRKAGVGMNGETLSGHERASLVDALQSTLHGLGEVLSKRTHMDKAARREADALGGPATATSMLDDVEGG---RASTADLHAGNR---VLVETAPMEGGARDPGAGWLTGAQLKAFRKQIEARSSLEIAALESERRKLRSKVEMFQRQVQFLQREGAGHSRIDPARQAATNGGGIGRAVARLGE--DGAG-----LAGEKRFADLLDARLGEERHLQATLQAEVNALRGTLEEKDGLIDAXXXXXXXXXXXXXXXXXXXXXXXE-------PLTPTRATENGDSRPHATNHGLAVPGRSVFAP---SEGRYRGRFHYRSSRLLGAAGPVAMAEAE-------AAARRVDAPRRATWSGSAPVNFHRVEG---HEVAEDAEMRPAGDSSPAPPLPGGGKEVFPAADHPEEALAASDSTLVGSVDVHT---GEHGALPPIXXXXXXXXXXS-HAAAEGVKSSESGVVSRATG---GAFRLLWKSARAVGSNVGLGSGGSEGVDKSPASVPRLRGNSSHAVLIL 1806
PRP P +++R+AARTSQA FLS+VLP Q P + A P S P N + S + +P R S G G A SG+ V D A ARW S++RL+D+ GLG+AA+HQL RAL+LCR LRG KAG+G G + SGHERAS +DALQSTLHGL EVLSKR +D+ AR EA+ALGGPA+ S+L+ EG + T +G R T + GG+ GWLTG+QLKAF K +EAR+S+EI+ALESERRKLRSKVEMFQRQVQ LQR+GAGHS GG A A E +GAG AGEKRFADLLDARLGEER +QATL+AE+ +LR T+EEKDGLI A + R + +G S P + + VP R V P R GR+H RSSR L A GPVA A A+R R WSG + V+ R V E RP GD + A A + + S + V T GEH A S A + ++S+AT A R+LW SA +GS V L GG V +SP R G+SSHAVLIL
Sbjct: 273 PRPTP---EIVRQAARTSQAAFLSSVLPTQNLDFDTANSDSSNPFTRAALPESPP---NGRHRSPVVGPG-EPGRASGIGGGGVSGLGAAISSGNGVGLTSSDTRAAARWASMRRLEDQGAGLGNAADHQLARALQLCRDLRGLKAGMG--GGSQSGHERASRLDALQSTLHGLEEVLSKRRVVDQTARAEAEALGGPASVWSLLNGDEGSGTDKDQTQVSSSGRREGAATGTTTAIGGGS----GGWLTGSQLKAFEKNVEARTSIEISALESERRKLRSKVEMFQRQVQLLQRDGAGHSPAPANGSTGKIGGYPAAAAAATSEVDNGAGGRFGAAAGEKRFADLLDARLGEERIVQATLEAELASLRRTIEEKDGLIGALREALRSAATPARGGDAATARAGTLAGHGAAQSSARRRSADGMSTPRSADDHAVVPTRGVLLPRSSDSSRSLGRYHSRSSRFLSAQGPVAAAXXXXXXXXXXVASRH---ERAGPWSGKSSVHGSRYAATGEDRVEEIRRPRPIGDGNDDADSTVSAVGGVGGASDEVTARSGNTSATTEAGPVATSNGGEHAAAAATMFRNRTGGDFSGRGTAPESAEGNADIISQATAMTSSALRMLWNSAWGMGSRVRLDGGGD--VLESPRKAQRQGGSSSHAVLIL 916 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8251.16450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8251.16450.1 >prot_S-dermatodea_contig8251.16450.1 ID=prot_S-dermatodea_contig8251.16450.1|Name=mRNA_S-dermatodea_contig8251.16450.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=474bp MNGETLSGHERASLVDALQSTLHGLGEVLSKRTHMDKAARREADALGGPAback to top mRNA from alignment at S-dermatodea_contig8251:515..3993+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8251.16450.1 ID=mRNA_S-dermatodea_contig8251.16450.1|Name=mRNA_S-dermatodea_contig8251.16450.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3479bp|location=Sequence derived from alignment at S-dermatodea_contig8251:515..3993+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8251:515..3993+ >mRNA_S-dermatodea_contig8251.16450.1 ID=mRNA_S-dermatodea_contig8251.16450.1|Name=mRNA_S-dermatodea_contig8251.16450.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2844bp|location=Sequence derived from alignment at S-dermatodea_contig8251:515..3993+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |