mRNA_S-dermatodea_contig824.16437.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig824.16437.1
Unique NamemRNA_S-dermatodea_contig824.16437.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig824.16437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig824contigS-dermatodea_contig824:16458..19103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig824.16437.1prot_S-dermatodea_contig824.16437.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig824 16458..19099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925330.7514832-CDS-S-dermatodea_contig824:16457..166571622925330.7514832-CDS-S-dermatodea_contig824:16457..16657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig824 16458..16657 -
1694079860.2760468-CDS-S-dermatodea_contig824:16457..166571694079860.2760468-CDS-S-dermatodea_contig824:16457..16657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig824 16458..16657 -
1622925330.7633872-CDS-S-dermatodea_contig824:19026..190991622925330.7633872-CDS-S-dermatodea_contig824:19026..19099Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig824 19027..19099 -
1694079860.2857792-CDS-S-dermatodea_contig824:19026..190991694079860.2857792-CDS-S-dermatodea_contig824:19026..19099Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig824 19027..19099 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925330.7737153-UTR-S-dermatodea_contig824:19099..191031622925330.7737153-UTR-S-dermatodea_contig824:19099..19103Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig824 19100..19103 -
1694079860.2963371-UTR-S-dermatodea_contig824:19099..191031694079860.2963371-UTR-S-dermatodea_contig824:19099..19103Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig824 19100..19103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig824.16437.1

>prot_S-dermatodea_contig824.16437.1 ID=prot_S-dermatodea_contig824.16437.1|Name=mRNA_S-dermatodea_contig824.16437.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=91bp
MSASLPSADVDVGGALPSVDVDVPGGVKAPSVDLVGKMPEIGGEMPSVDV
ASAKVSASFPDVSGDVSLPSVDLAGKMPEVGGEVSGDMPSV
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mRNA from alignment at S-dermatodea_contig824:16458..19103-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig824.16437.1 ID=mRNA_S-dermatodea_contig824.16437.1|Name=mRNA_S-dermatodea_contig824.16437.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2646bp|location=Sequence derived from alignment at S-dermatodea_contig824:16458..19103- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGAATGTCGGCATCCCTGCCCAGCGCAGATGTGGACGTCGGTGGTGCCT
TGCCTTCGGTAGACGTCGATGTACCCGGTGAGACGTGGGAGATGAGGAGA
TTCGTGTACGGCGGTGGCGCATACCTCGCTTGCCCTTTACGCCCACCGAT
AATGTCGGCCGACGTGCTTCGTTCTCCTCTTTTTCGCGATTTGAACATAA
TCACAGTCTGTTGGGGGCCACCGATTTGCACGCCAGCATGCGTCAAATTG
TGTGTTGGTGTGGTCGGCCTGTCGGGTGTGTTCATAGAGAGTCCAGCGTT
GTTCATGGGGATCGTCGCACGACGGGGACGCGATTGTAACGCTATGCCTG
GTATAATGTTTTTCTTGCACGCAACCCCTTCCCGCCCCTTGCCTCCCGCC
GCCCCCCCCCTCCCCTCTCTTTTTTTCCCCGATCCGTAGGCGTGGGGGGT
GATTTAAAAGCGCCCGATATGCCGTCAGTCAGTGGCAAGCTCCCGTCCGT
CTCTGTACCTGAGCTGCCTTCCGTTGCCGCCGACCTTTCCGCTTCCGTAC
CGAACGTAGCGGGAGATGTCACGGTGCCATCCGTTGGTGCTGATCTTCCG
TCCGTGAGCTCCGAGCTCCCTTCCGTCGCCGCTGACGTTTCCTGCTCCAT
GCCCGACGTTTCCGCGGGTGTACCGTCGATCGGTATCGAAACCCCTTCCG
TTACCGCAGACGTTCCGTCCGTTACAGGCGACATTTCCGGCTCCGTGCCG
GACGTGTCGGCAGAAATAGAGGTTCCTTCCGTCAGCGCTGAATTGCCTTC
CATGACCGACGACATTTCCGGCTCCGTCCCGCACGTATCCGGAGAAGTTG
GGGTGCCGTCCCTGAGCGCGGGCATGCCTTCCGTTGGTGCTGAAGGCCCG
TCCGTTACCGCCGGTGTTTCCGGCTCCGTGCCGGACGTATCTGGAGAGGT
TGGAGCTCCTTCCATCAGTATCGACACGCCTGCGGTCACGTGCGACGTGC
CTTCCGTGACCGGCGCCATCTCCGGCTCCCTGCCTGACGTGTCCGGAAAG
ATCGATGCTCCTTCCATCAGTGCCGATCTCCCTTCCGTCACTGCTGACAT
TCCTTCCGTTACCGGCGAAACTCCTTCCGTCGCTGGCGACATGCCTTCCG
TTACTGCTGACCTTTCCAGCTCCGTACCGGACGTGTCGGTAGAGATTGGC
GCTCCTTCCATCCGGGCCGACATCCCTTCTGTCACTGCCGACATTCCCTC
CGTTGCCCCCGGCATTTACGGCTCCGTACCGGGCGTATCCGGAGATGTTG
ACGTTCCTTCCATGAGCGCCGAGATCCCTTCCGTCGCCTGCGACGTACCT
TCCGTTTCCGCCGACGTTTCCGGCTCCGTACCGGACTTACCGGGAGCTGT
TGAGGTTCCTTCCATGAGTGCTGAAATCCCTTCCGTCACCGGCGACATTT
CCGGTTCCGTGCCGGACGTGTCGGGAGAGATTGAAGCTCCTTCGGTGATT
GCCGAACTCCCTTCCGTCACCGCCGACATCCCGTCCGTTACCGCCGACAT
TCCTTCCGCTACCGGCGATATTTCCGCCTCCGTGCCGGACGTATCCGGAG
GAATTGATGCTCCTGCCATCGTTGCCGAAATCCCCTCCGTCACCGTCGAT
GTTCCTTCCGTTACTGGCAACATTTCCGGCTCCGTGCCGGACGTGTCGGG
AGAGATCGAGGTTCCTTCCATGAGCGCCGAAATGCCTTCCGTGACCGCTG
ACCTATCCGGCTCCGTGCCGGACATATCGGGAGAAATTCGGGTGCCATCC
CTGAGCGCGGACATGCCTTCTGTTGGTGCCGAAATCCCGTCCGTTGCCGC
CGACATTTCCGGCTCCGTGCCGGCCGTATCGGGAGAAGTTGGGATGCCTT
CCGTGGGCGCGGACATGCCTTCCGTCGGTGCCGACCTCCCCGCTGCTGGC
AACGCCGATGTTTCCTTGCCGAGTGTGACCGCACATGTTCCGACGCCGTC
TGTGAACGTAGACGTGCCGTCGGGCTCCGTGGATGTGCTTGGTGAGTCGT
CGTTCGTCTCGTGTTTTGTTTTTGGATGTCCCCGACTCCGAGCTCTTTTG
CCACCGAAGAGGGCTGCACCCGCAGCTGCTTTTTTCAGCCGTCGGGGCGA
CCCCCCACCCCCCGCGGCTCCCGCCACCCGTCCCGTGGGCTGTCGTCTGT
GCGACTGCCTGCAGAAGAATCTACTTAAATGCGGACTACACACGTCATCG
TTTACGTTGCACTAGTACAGGCGTTATTTTGCCTTCCATGGACCGATCGA
ACACTTATCGAGAGGCCGGGTGCCCTTTTCCGCATGGTATATGATAGCAG
CAGCGTGAGGCACGCCGCCACGCTATTTACGTTGTCCTGACCTGCTTGTT
GTCCGCGACCTTGCACCGTCAAACGCGATGATCTCCTTGTCCCCAGGCGG
AGTTAAGGCACCATCGGTAGACCTGGTCGGCAAGATGCCCGAGATTGGAG
GGGAAATGCCGTCGGTGGACGTTGCTTCAGCTAAGGTGTCTGCCTCGTTC
CCCGACGTCTCCGGAGATGTCTCGCTTCCTTCCGTGGACCTGGCCGGCAA
GATGCCCGAGGTCGGAGGGGAGGTCTCTGGCGACATGCCCTCCGTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig824:16458..19103-

>mRNA_S-dermatodea_contig824.16437.1 ID=mRNA_S-dermatodea_contig824.16437.1|Name=mRNA_S-dermatodea_contig824.16437.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at S-dermatodea_contig824:16458..19103- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGGCATCCCTGCCCAGCGCAGATGTGGACGTCGGTGGTGCCTTGCC
TTCGGTAGACGTCGATGTACCCGATGTCGGCATCCCTGCCCAGCGCAGAT
GTGGACGTCGGTGGTGCCTTGCCTTCGGTAGACGTCGATGTACCCGGCGG
AGTTAAGGCACCATCGGTAGACCTGGTCGGCAAGATGCCCGAGATTGGAG
GGGAAATGCCGTCGGTGGACGTTGCTTCAGCTAAGGTGTCTGCCTCGTTC
CCCGACGTCTCCGGAGATGTCTCGCTTCCTTCCGTGGACCTGGCCGGCAA
GATGCCCGAGGTCGGAGGGGAGGTCTCTGGCGACATGCCCTCCGTTGCGG
AGTTAAGGCACCATCGGTAGACCTGGTCGGCAAGATGCCCGAGATTGGAG
GGGAAATGCCGTCGGTGGACGTTGCTTCAGCTAAGGTGTCTGCCTCGTTC
CCCGACGTCTCCGGAGATGTCTCGCTTCCTTCCGTGGACCTGGCCGGCAA
GATGCCCGAGGTCGGAGGGGAGGTCTCTGGCGACATGCCCTCCGTT
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