mRNA_S-dermatodea_contig8209.16403.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8209.16403.1
Unique NamemRNA_S-dermatodea_contig8209.16403.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8209.16403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8209contigS-dermatodea_contig8209:2385..4868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size293
Cds size291
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8209.16403.1prot_S-dermatodea_contig8209.16403.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8209 2385..4867 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925328.4945216-CDS-S-dermatodea_contig8209:2384..24261622925328.4945216-CDS-S-dermatodea_contig8209:2384..2426Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8209 2385..2426 -
1694079858.7451026-CDS-S-dermatodea_contig8209:2384..24261694079858.7451026-CDS-S-dermatodea_contig8209:2384..2426Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8209 2385..2426 -
1622925328.5091538-CDS-S-dermatodea_contig8209:4224..43241622925328.5091538-CDS-S-dermatodea_contig8209:4224..4324Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8209 4225..4324 -
1694079858.7567225-CDS-S-dermatodea_contig8209:4224..43241694079858.7567225-CDS-S-dermatodea_contig8209:4224..4324Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8209 4225..4324 -
1622925328.5219162-CDS-S-dermatodea_contig8209:4718..48671622925328.5219162-CDS-S-dermatodea_contig8209:4718..4867Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8209 4719..4867 -
1694079858.7647233-CDS-S-dermatodea_contig8209:4718..48671694079858.7647233-CDS-S-dermatodea_contig8209:4718..4867Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8209 4719..4867 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925328.5314887-UTR-S-dermatodea_contig8209:4867..48681622925328.5314887-UTR-S-dermatodea_contig8209:4867..4868Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8209 4868..4868 -
1694079858.77315-UTR-S-dermatodea_contig8209:4867..48681694079858.77315-UTR-S-dermatodea_contig8209:4867..4868Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8209 4868..4868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8209.16403.1

>prot_S-dermatodea_contig8209.16403.1 ID=prot_S-dermatodea_contig8209.16403.1|Name=mRNA_S-dermatodea_contig8209.16403.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=97bp
MFRELIEASLDKRDWSLTARASYGPDGSNENHLQRRFPDGPPAEGAEWSR
KKRRTVGGLHLTRKEKREDRRAWHVVIAKSNLLLRVALVLAEKLSNA
back to top

mRNA from alignment at S-dermatodea_contig8209:2385..4868-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8209.16403.1 ID=mRNA_S-dermatodea_contig8209.16403.1|Name=mRNA_S-dermatodea_contig8209.16403.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2484bp|location=Sequence derived from alignment at S-dermatodea_contig8209:2385..4868- (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGTTCCGTGAGCTGATCGAGGCAAGCCTCGACAAGAGAGACTGGTCCT
TGACAGCGCGCGCCAGCTACGGCCCAGATGGATCTAACGAAAACCACCTT
CAGAGGCGTTTTCCGGACGGACCCCCGGCGGAGGGGGCGGAATGGAGCAG
GTGATCTTCTGTTTTGTTGTACTCTGTGGGTACGAGTGTAGATATGCCCC
GAAGGAGGCATATTTTGCTCGGTATTGCGCCCCACGTTAACCGTGAAAAT
ACTCAGCAGCAGCACCCGAAAACGAAATCGACCAGACGTGTGAAGTCAGG
CTGTCTCACCCTTCCTGCCGCCGCTGCCGCTGCTGCTTCTCCTTCTTTGC
TGCTGCTGCAAAAAAAACAATATTTGCCCAGTAACCGTAACATTTCATAG
AGCGTTGGGTCTCCGACGTGTCCCCCGCGGGGGTGTACGTTTGACATTTC
ACAATCCTGCGCGATGACGGTGGCTCCGCTGAGTCGCAAGAGAAGCCTGA
TCTCTCTGCTGTGCTGGTTCGCTTCTTCGTTTCTTTGGAGGCAGGAAGAA
GAGAAGGACTGTCGGAGGGCTTCATTTGACGCGGAAAGAGAAGCGTGAGG
ATCGAAGGGCTTGGCACGTGGTTATCGCCAAGAGCAACCTGCTGGTGAGG
GCGGGGGCTTGGGGGGGGCGGGGGCGGGGGGGGGGGAGGGGGTGTTTTCA
GGGTAAGGATGCCAGTGCTGGTCGGCCATTGAGCACACGTCGTTCGGACG
ACAGACCATGGTTTTTCCACAGGATCGACCACGGATGGCCAATCGTTCCT
TTTTACTCCGCCAAAGGGTGTGTGTGGGGGGTGTACTTATGTCCCACGCA
TGCGGTTTCCAAACCGACATAAACCATGCGTTCCAACAATGCCGGGATGA
ATTGGTATGGCGGGTTATCGCTGCCCCAAATGCAGATGGGGGAGGGAGTG
GGTGCGTGTGTTGCCATGTTTAACGCATGTCGTATCCAAACGGGCAAAGA
ACACGTCCCACCCACTGCCGGAACAGAGTGACATGCCGGGTTTTCGCCGG
CCAGGCTGTGCTTCACACCGGTCCTACCAGCTCTTATCAGCGTCCTTGCG
CTTGCGAGGTCAGCCGGGTATGCCGTGGGTTGAGTAAACATACCGGGTAA
CCAGATGGTGAACGTGGAGCAGTCGTCACTATCCTCCGAGCACCGCAAAG
GCACTTTTGATATTCGCGCGAAGGCTCACGCGCGGCACGTACAGAGCATT
CATACCCAACGGTGCATGTGTGATAAAACTCATACTTTACTATTGCTCAT
GAATGCTCTTGGCGAAGCATCACTCACAAGTGTATAGTTGCTCTAGGATT
ATCCAACAATCGTCCGTTGTTCTGCAGGTATCCTATAGGATGTGATACCC
TTCATCCCTTTGGGAGGAGGCAAGAGGGAGGGGGGGGTTACTCCAACAAA
TATCAATACTTGTACTGGTACGCGAAAAAATTATGTGCTAGAGACAAATT
TTCTTGGCTCGCTAAACACATCACGGTAGACTGTCAAGATATCGCCCAGG
ACGAAGACACCTGACCTTTATATTATTCATTAATGCAACAATGACCGATT
GTGTATATTGATTTTAGACAAGGATGCTGGCATGCTGATGCCAAACAACG
TGATGTTTGTCTTGAGCGTGTTTTTTGTTTTAAAGCGAAAACACAGCAGC
GACACGCACAGCAGCGACGCGCACAAGTAGCTCGACCGCGTTCGACCTCC
GTGTCGCGTTCCGTCGGCATATCGTCCTGCCAACGCACACCTCACACGGG
CCTTGCCGTGGCTACCCACTAGTAACATCATATAGTACATGGAACTATAG
CATCGTACGCAACGTCAGCCTCCATAGGTGTAGCTTGGACCACCTTCCTT
TTTAGAAACTGTGGGACCCCAACGCTTGCTCTGTCTTCGTTCAATTTTTT
TACTTTTTTAGGGGTTTACTCCGACATAAAGGATTGATCCCACGGCTCGT
TATACGTTCTTAGTTTTTGTTTTCTGTTTTTCGAAGGGTGCTTGGCGATT
CCACCCATTCAGGTTTTCACCTAAAAAAGGTTTGCGGTATGGATGGCAAA
TGATGTTCCACGTGAGCCACCTCTCACCAAACAGACGCGTCGAAAAAGCT
TGAGCCTGTCGTTTGGTAGCTAGCTACTTAGGCGCGCGCTTACCCGTGCT
GTCTACAGTGATTAAATGGTGGGGAACGAGGAGGTATCGCGCAAGACGCG
CTCGCCCTGCTTGCCGTTAGTACATTTTCTTACAACACGCTAGTGTTGCC
TATAAAGTAGGTGAACCATGAATAATCTTAGTTTTGAAGAGACGCCGAAT
GGCGAGGCTAGCGACAGTACCCTGGTCTGAGCCCCACCCCTCTCCGAAAC
GTTCGCGCGCCCCACCTCGCATCTCCTTCATCGCGAGAGTAGCTCCGCGT
AGCCCTGGTGCTGGCCGAGAAGCTCAGTAATGCC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8209:2385..4868-

>mRNA_S-dermatodea_contig8209.16403.1 ID=mRNA_S-dermatodea_contig8209.16403.1|Name=mRNA_S-dermatodea_contig8209.16403.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig8209:2385..4868- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCCGTGAGCTGATCGAGGCAAGCCTCGACAAGAGAGACTGGTCCTT
GACAGCGCGCGCCAGCTACGGCCCAGATGGATCTAACGAAAACCACCTTC
AGAGGCGTTTTCCGGACGGACCCCCGGCGGAGGGGGCGGAATGGAGCAGA
TGTTCCGTGAGCTGATCGAGGCAAGCCTCGACAAGAGAGACTGGTCCTTG
ACAGCGCGCGCCAGCTACGGCCCAGATGGATCTAACGAAAACCACCTTCA
GAGGCGTTTTCCGGACGGACCCCCGGCGGAGGGGGCGGAATGGAGCAGGA
AGAAGAGAAGGACTGTCGGAGGGCTTCATTTGACGCGGAAAGAGAAGCGT
GAGGATCGAAGGGCTTGGCACGTGGTTATCGCCAAGAGCAACCTGCTGGA
AGAAGAGAAGGACTGTCGGAGGGCTTCATTTGACGCGGAAAGAGAAGCGT
GAGGATCGAAGGGCTTGGCACGTGGTTATCGCCAAGAGCAACCTGCTGCT
CCGCGTAGCCCTGGTGCTGGCCGAGAAGCTCAGTAATGCCCTCCGCGTAG
CCCTGGTGCTGGCCGAGAAGCTCAGTAATGCC
back to top