mRNA_S-dermatodea_contig82.16393.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82.16393.1
Unique NamemRNA_S-dermatodea_contig82.16393.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig82.16393.1 vs. uniprot
Match: A0A6H5KP96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP96_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 2.480e-68
Identity = 121/194 (62.37%), Postives = 143/194 (73.71%), Query Frame = 1 
Query:    1 LKSFLGSSLGQAGPFPRPCGELDSGWEVKEVAVDGDIAGGYSIGTLDKPTTRLSQYARGKTGSMNPFTPGGEGLPNATGEGGAGDRVKSTGFAVAPEVHNDYFSEEAVIASIAALDPGSQVPLLSVPPNVNFSDGLTADEASKGTPQWAGQARRQRLVEAEAIDPVGSGGDGNEEVEDKME----ELPPPPKMG 570
            LK+FLGSSLG  GPFP  C +LDSGWEV+EV +DGD AGGYS+GTLDKPTTRLSQYARGKTG+MNPFTPGGE LP A+ EGGAG RVK+T F+  P   +D+ S+ AV  S+AALDP SQ+PLLSVPPNV+FS GLTAD  ++G P WAGQARR+R+V+A+                        ELPPPPK+G
Sbjct:   15 LKTFLGSSLGHHGPFPPACRDLDSGWEVEEVPLDGDSAGGYSVGTLDKPTTRLSQYARGKTGNMNPFTPGGEDLPYASAEGGAGQRVKNTAFSAKPAQQHDHMSDLAVAESVAALDPESQIPLLSVPPNVSFSAGLTADHVAEGAPLWAGQARRRRMVDAKXXXXXXXXXXXXXXXXXXXXXXXXELPPPPKIG 208
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BLAST of mRNA_S-dermatodea_contig82.16393.1 vs. uniprot
Match: D7FJL2_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL2_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 7.680e-68
Identity = 122/194 (62.89%), Postives = 142/194 (73.20%), Query Frame = 1 
Query:    1 LKSFLGSSLGQAGPFPRPCGELDSGWEVKEVAVDGDIAGGYSIGTLDKPTTRLSQYARGKTGSMNPFTPGGEGLPNATGEGGAGDRVKSTGFAVAPEVHNDYFSEEAVIASIAALDPGSQVPLLSVPPNVNFSDGLTADEASKGTPQWAGQARRQRLVEAEAIDPVGSGGDGNEEVEDKME----ELPPPPKMG 570
            LK+FLGSSLG  GPFP    +LDSGWEV+EV +DGD AGGYS+GTLDKPTTRLSQYARGKTG+MNPFTPGGE LP A  EGGAG RVK+T F+  P   +DY S+ AV  S+AALDP SQ+PLLSVPPNV+FS GLTAD  ++G P WAGQARR+R+V+A+A                       ELPPPPK+G
Sbjct:  171 LKTFLGSSLGHHGPFPPARRDLDSGWEVEEVPLDGDSAGGYSVGTLDKPTTRLSQYARGKTGNMNPFTPGGEDLPYAGAEGGAGQRVKNTAFSAKPAQQHDYMSDLAVAESVAALDPDSQIPLLSVPPNVSFSTGLTADHVAEGAPLWAGQARRRRIVDAKAXXXXXXXXXXXXXXXXXXXXXXXELPPPPKIG 364
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82.16393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KP96_9PHAE2.480e-6862.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJL2_ECTSI7.680e-6862.89DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82contigS-dermatodea_contig82:13119..15908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.9
Seed ortholog evalue8e-60
Seed eggNOG ortholog2880.D7FJL2
Preferred nameSKIV2L
KEGG koko:K12599
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015672,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019439,GO:0023052,GO:0030001,GO:0030968,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034427,GO:0034620,GO:0034641,GO:0034655,GO:0034976,GO:0035864,GO:0035966,GO:0035967,GO:0040029,GO:0042221,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070478,GO:0070481,GO:0070887,GO:0071310,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
EggNOG OGsCOG4581@1,KOG0947@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Exons4
Model size580
Cds size579
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82.16393.1prot_S-dermatodea_contig82.16393.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82 13119..15908 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925327.8605127-CDS-S-dermatodea_contig82:13118..133511622925327.8605127-CDS-S-dermatodea_contig82:13118..13351Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 13119..13351 -
1694079858.2947092-CDS-S-dermatodea_contig82:13118..133511694079858.2947092-CDS-S-dermatodea_contig82:13118..13351Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 13119..13351 -
1622925327.8741822-CDS-S-dermatodea_contig82:14073..142031622925327.8741822-CDS-S-dermatodea_contig82:14073..14203Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 14074..14203 -
1694079858.3068845-CDS-S-dermatodea_contig82:14073..142031694079858.3068845-CDS-S-dermatodea_contig82:14073..14203Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 14074..14203 -
1622925327.88406-CDS-S-dermatodea_contig82:15340..154751622925327.88406-CDS-S-dermatodea_contig82:15340..15475Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 15341..15475 -
1694079858.3166885-CDS-S-dermatodea_contig82:15340..154751694079858.3166885-CDS-S-dermatodea_contig82:15340..15475Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 15341..15475 -
1622925327.8934386-CDS-S-dermatodea_contig82:15827..159081622925327.8934386-CDS-S-dermatodea_contig82:15827..15908Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 15828..15908 -
1694079858.326317-CDS-S-dermatodea_contig82:15827..159081694079858.326317-CDS-S-dermatodea_contig82:15827..15908Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 15828..15908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82.16393.1

>prot_S-dermatodea_contig82.16393.1 ID=prot_S-dermatodea_contig82.16393.1|Name=mRNA_S-dermatodea_contig82.16393.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=193bp
LKSFLGSSLGQAGPFPRPCGELDSGWEVKEVAVDGDIAGGYSIGTLDKPT
TRLSQYARGKTGSMNPFTPGGEGLPNATGEGGAGDRVKSTGFAVAPEVHN
DYFSEEAVIASIAALDPGSQVPLLSVPPNVNFSDGLTADEASKGTPQWAG
QARRQRLVEAEAIDPVGSGGDGNEEVEDKMEELPPPPKMGMPP
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mRNA from alignment at S-dermatodea_contig82:13119..15908-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82.16393.1 ID=mRNA_S-dermatodea_contig82.16393.1|Name=mRNA_S-dermatodea_contig82.16393.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2790bp|location=Sequence derived from alignment at S-dermatodea_contig82:13119..15908- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCAAGTCCTTCCTCGGTAGCTCCCTCGGCCAGGCAGGCCCGTTTCCACG
TCCCTGCGGAGAGCTGGACAGTGGCTGGGAGGTGAAGTCGTATGTTTGGT
TCCTGTTTCTCGTATTTCGCTGCATGCTCGAAGCCATTAAACACGAAGTG
CTGTGCCTATAGGCGATAATACTGAATATATAAGAACGCGCCATTGGCAT
ACTTGATGTCCTTCTCCTGCTATGATTACGCTTCTCCCTATGTCTAAACA
AGCTGGTCGGAGTAATATATATAAAAAAGTCGTGTAGCAGGACACTATCA
ATGGAGTACTGACATGCTAAGATCACGCATGTAGAATTGAAGGACACACT
ATTAAAGGAGTGCTGAAGAAGGCTTACGATGTGTGCACCTCATGCCTCAT
AACGTTGCCGGCCTGCTGACGCCGTATTGTTAGGTTAAAGAGGTCGCCGT
GGACGGCGACATTGCCGGTGGATATTCCATCGGTACCCTGGACAAGCCCA
CCACGAGGCTGTCCCAGTACGCCAGAGGAAAGACTGGTAGCATGAACCCG
TTCACCCCAGGAGGAGAGGTGTGTGGGCTTTGATGCCGGACACTGGAAGC
CATGTGTTGGTTGTACAGCAATGACGGGGGGCTTACAACGGTTGCAGTAG
CTGGGGGAAGCGCCTCGCCATGGAGGTTCGACGAGCCTTTTGCGGCTTCC
GCTACGGCGACGATCGTTAAATAACTGTTTTTCGGATATAGCCTTGCGCA
CATTGAATTCGAAATGCTGCATGGCGCGGAGGCGAATTCGTTCCAGGCTA
CGCAGCTTGTTTTATTTGAAATGAAGGGCTGAGCAGAGGTTTCAAATTCC
TGTGAATTGCCTCGTGATGGGGAAACTACGCGTGACCGCCCCTTTCTCGA
CCCGCTAACCACGGTTTTGTCCAGCACATCGTCGCACTCCTCGCCACAAG
AAAGGACGAGTACAATCGCAGCGAAGGATTTTACCTGCACAGTTTAAGCA
AGAGTCTCCGTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TTCCTCGTTTTCGGCCTCTGCTGCGCCCCCTCGAGTTCGACTGAGGCCCA
GCGTTCCNNNNNNNNNNCCGCCCCCTAACCCCCGGTTGTTCCGCCCACCG
GTCTCCCTCCCCCCCACACAAAAGAACGGAGAAAACCCGCCGGCAGGCTT
TTTTCTCCACAGTTTTTGAAAAAGACCCCCGCCCCCCCCCCCCCCCCCCC
CCTGGTTTTTCGATTTGTGTGACGACGGCTGAGTTTCGAAACAAGCTAAA
GCGAGTGCGCCATCCGTCATACACCATAGCTGCGAACCTTAGCGAGCCTC
TTCCTCTTGGCTCCCGTCTGCCGCAGCCGTTCGTTGGAATTGTGATGGAT
TAACTCCTGTGAAGAAGCGCTTCGCGTACGTAAACGCGATCTGCGAATGA
CAACGCGATCGTGGATTCAAACACCCTCCAAAAACCTGCAAGCTACGGGA
GTGTCGAATTCAATACGCGAAACATTCCGAGACTTGTTCCGGAGTTGAAT
CGGTGGGATAGTCGATCCCCGTGGGCCACAGGTGGGGGCCTGGATGAGGC
ATATGTGTTGGAAGCGTACCCCCCCCCCCCATGTAGAGGCACTATACACT
GCTCCTCTTACGTTTACTCGCGATGTCCCTCTTATTACCTTGTCAACGTG
TGCAGGGTCTGCCGAACGCCACCGGCGAGGGTGGTGCCGGAGATCGTGTC
AAGAGCACCGGCTTTGCCGTGGCGCCCGAAGTGCACAACGACTACTTTTC
CGAGGAGGCGGTGATTGCGAGTATCGCGGCGCTCGGTAAGCCAAACCGAC
ACGCTTCGCGTCCAATCTTGCACGCCGCCGCTGGTCATTCCAATTCATGC
AATCCCCGGTGTCCCGTGTATGTGCAGCAAATACCAGTGCTGTACGGTGT
GTCTTGGTCGTATATGTCGTGCCTCGGTGTACGGAAGACGTAGTGACTCG
ACAGTAGGTGGAGAGCGGCCATGCCCAGACAACACCGCATTTTCATAGAG
TCCGCGTCGAAATTCGGGTGGTTCGGAGCGCTTGCGATGCGCCTAGAACG
TCCGATTGACTCAAGCGCGCAGTGAGATCGATGCGAACTGGTCGGCTCAT
GCGGTGTCCAGTACTTGAATCAAGACGAAGCGTCGGGGAAAACGGGTCGG
TGTTGTCGACCGCTGCCTAAGTATGGATGCCCTAACCTGTGTGACGTTGG
TTAGGTGGTTCGGTTTCTGTTGGGTTGTGTCAGAAACAGTATGCGCTGTG
TTTGATGTTTCGGAGATAGTTGTCTCGCACTGCTTGGTACAGACCGACGC
GACGTGTCGCCGAATTAATTCATCGCTCCCTAAAATCGATCACCCGAAGC
GATAGGGGCGTCGGGAATTGTTGGAGCAGGGAGGCATATACATATATCAT
GACAGCAGCGCGCCCGCTCGACCGGCAGACACACCGTGGCACTCTGCTAC
GCCACGAAACAACCTGGTTATGTTTCAACCACCCCACTTGCCCCACCCCC
CGTGCAGATCCGGGGTCTCAGGTTCCTCTCCTGTCAGTTCCGCCCAACGT
TAACTTTTCGGATGGGCTTACGGCAGACGAGGCCAGCAAGGGCACTCCCC
AGTGGGCGGGGCAAGCGCGCCGGCAGAGACTGGTGGAAGCGGAGGCTATT
GATCCTGTTGGGAGTGGCGGCGATGGTAACGAGGAAGTTGAAGACAAGAT
GGAAGAGCTTCCGCCTCCACCGAAGATGGGAATGCCCCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig82:13119..15908-

>mRNA_S-dermatodea_contig82.16393.1 ID=mRNA_S-dermatodea_contig82.16393.1|Name=mRNA_S-dermatodea_contig82.16393.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at S-dermatodea_contig82:13119..15908- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCAAGTCCTTCCTCGGTAGCTCCCTCGGCCAGGCAGGCCCGTTTCCACG
TCCCTGCGGAGAGCTGGACAGTGGCTGGGAGCTCAAGTCCTTCCTCGGTA
GCTCCCTCGGCCAGGCAGGCCCGTTTCCACGTCCCTGCGGAGAGCTGGAC
AGTGGCTGGGAGGTTAAAGAGGTCGCCGTGGACGGCGACATTGCCGGTGG
ATATTCCATCGGTACCCTGGACAAGCCCACCACGAGGCTGTCCCAGTACG
CCAGAGGAAAGACTGGTAGCATGAACCCGTTCACCCCAGGAGGAGAGGTT
AAAGAGGTCGCCGTGGACGGCGACATTGCCGGTGGATATTCCATCGGTAC
CCTGGACAAGCCCACCACGAGGCTGTCCCAGTACGCCAGAGGAAAGACTG
GTAGCATGAACCCGTTCACCCCAGGAGGAGAGGGTCTGCCGAACGCCACC
GGCGAGGGTGGTGCCGGAGATCGTGTCAAGAGCACCGGCTTTGCCGTGGC
GCCCGAAGTGCACAACGACTACTTTTCCGAGGAGGCGGTGATTGCGAGTA
TCGCGGCGCTCGGGTCTGCCGAACGCCACCGGCGAGGGTGGTGCCGGAGA
TCGTGTCAAGAGCACCGGCTTTGCCGTGGCGCCCGAAGTGCACAACGACT
ACTTTTCCGAGGAGGCGGTGATTGCGAGTATCGCGGCGCTCGATCCGGGG
TCTCAGGTTCCTCTCCTGTCAGTTCCGCCCAACGTTAACTTTTCGGATGG
GCTTACGGCAGACGAGGCCAGCAAGGGCACTCCCCAGTGGGCGGGGCAAG
CGCGCCGGCAGAGACTGGTGGAAGCGGAGGCTATTGATCCTGTTGGGAGT
GGCGGCGATGGTAACGAGGAAGTTGAAGACAAGATGGAAGAGCTTCCGCC
TCCACCGAAGATGGGAATGCCCCCCATCCGGGGTCTCAGGTTCCTCTCCT
GTCAGTTCCGCCCAACGTTAACTTTTCGGATGGGCTTACGGCAGACGAGG
CCAGCAAGGGCACTCCCCAGTGGGCGGGGCAAGCGCGCCGGCAGAGACTG
GTGGAAGCGGAGGCTATTGATCCTGTTGGGAGTGGCGGCGATGGTAACGA
GGAAGTTGAAGACAAGATGGAAGAGCTTCCGCCTCCACCGAAGATGGGAA
TGCCCCCC
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