mRNA_S-dermatodea_contig8199.16391.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8199.16391.1
Unique NamemRNA_S-dermatodea_contig8199.16391.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8199.16391.1 vs. uniprot
Match: D7FL25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL25_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 7.080e-23
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 3 
Query:   48 GAARMLAPLFLTRLLVITVAFTVTPSLGTHQLSNVEKRHHELGAQRNELFGEMQEVLGQQQEEVAACRAALALSQ 272
            G  RML PL L+++LVI  AF+V PS G+HQLSNVEKRHHELGAQRN+LF EMQE+L QQQ+EVA CRAALA SQ
Sbjct:    4 GTTRMLPPLLLSKILVI-AAFSVLPSYGSHQLSNVEKRHHELGAQRNDLFREMQELLKQQQDEVAECRAALARSQ 77
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BLAST of mRNA_S-dermatodea_contig8199.16391.1 vs. uniprot
Match: A0A6H5K1X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X3_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 4.520e-5
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 3 
Query:  171 LGAQRNELFGEMQEVLGQQQEEVAACRAALALSQ 272
            LGAQRN+LF EMQE+L QQQ+EVA CRAALA SQ
Sbjct:    5 LGAQRNDLFREMQELLKQQQDEVAECRAALARSQ 38
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8199.16391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL25_ECTSI7.080e-2373.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1X3_9PHAE4.520e-579.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8199contigS-dermatodea_contig8199:3614..8657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue9.7e-19
Seed eggNOG ortholog2880.D7FL25
Preferred namePRMT10
KEGG rclassRC00003,RC02120,RC03388,RC03390
KEGG koko:K11434
KEGG ReactionR11216,R11217,R11219
KEGG Pathwayko04068,ko04922,map04068,map04922
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008469,GO:0008757,GO:0009791,GO:0009889,GO:0009987,GO:0010228,GO:0010468,GO:0010556,GO:0016043,GO:0016273,GO:0016274,GO:0016277,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018193,GO:0018195,GO:0018216,GO:0019219,GO:0019222,GO:0019538,GO:0019919,GO:0022414,GO:0031323,GO:0031326,GO:0032259,GO:0032501,GO:0032502,GO:0034969,GO:0035241,GO:0035242,GO:0035246,GO:0035247,GO:0036211,GO:0042054,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:1901564,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein-arginine omega-N asymmetric methyltransferase activity
EggNOG OGsCOG0500@1,KOG1499@2759
EC2.1.1.319
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categorychloroplast
Exons3
Model size292
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8199.16391.1prot_S-dermatodea_contig8199.16391.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8199 3614..8649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925327.7309177-CDS-S-dermatodea_contig8199:3613..37331622925327.7309177-CDS-S-dermatodea_contig8199:3613..3733Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8199 3614..3733 -
1694079858.2061243-CDS-S-dermatodea_contig8199:3613..37331694079858.2061243-CDS-S-dermatodea_contig8199:3613..3733Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8199 3614..3733 -
1622925327.743503-CDS-S-dermatodea_contig8199:4683..47391622925327.743503-CDS-S-dermatodea_contig8199:4683..4739Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8199 4684..4739 -
1694079858.2215-CDS-S-dermatodea_contig8199:4683..47391694079858.2215-CDS-S-dermatodea_contig8199:4683..4739Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8199 4684..4739 -
1622925327.757085-CDS-S-dermatodea_contig8199:8543..86491622925327.757085-CDS-S-dermatodea_contig8199:8543..8649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8199 8544..8649 -
1694079858.2317133-CDS-S-dermatodea_contig8199:8543..86491694079858.2317133-CDS-S-dermatodea_contig8199:8543..8649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8199 8544..8649 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925327.766541-UTR-S-dermatodea_contig8199:8649..86571622925327.766541-UTR-S-dermatodea_contig8199:8649..8657Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8199 8650..8657 -
1694079858.2413075-UTR-S-dermatodea_contig8199:8649..86571694079858.2413075-UTR-S-dermatodea_contig8199:8649..8657Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8199 8650..8657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8199.16391.1

>prot_S-dermatodea_contig8199.16391.1 ID=prot_S-dermatodea_contig8199.16391.1|Name=mRNA_S-dermatodea_contig8199.16391.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=94bp
MGRARAMDASQTTGAARMLAPLFLTRLLVITVAFTVTPSLGTHQLSNVEK
RHHELGAQRNELFGEMQEVLGQQQEEVAACRAALALSQQKGQDA
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mRNA from alignment at S-dermatodea_contig8199:3614..8657-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8199.16391.1 ID=mRNA_S-dermatodea_contig8199.16391.1|Name=mRNA_S-dermatodea_contig8199.16391.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5044bp|location=Sequence derived from alignment at S-dermatodea_contig8199:3614..8657- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCGGAGCATGGGCAGAGCAAGAGCAATGGACGCAAGCCAGACCACGGGT
GCGGCAAGGATGCTTGCACCACTGTTTCTGACCAGGCTTCTGGTCATCAC
AGTAGCTTTCACAGGTGAAGAGCCACCCTCATGGTGTGGTGTGATTGCGC
TGAGATCGGACAGCAGTATGACACCAGCTGTCGCAGCTCTATGCTGTACC
ACTCCTAGGCTCCTAGGTTGTAGTTGTAGTTGGGTGCTCACTGTCACCGA
CAGGCCTCGGGTGGCTACTTGCCCATCCCTGCTGGGTGGCAATATATCAC
GATGGTGCAGGCCCCTGGCCTCTCGTGGTTTATCGCGGTCGGTGATGCCG
ACCGCTGACCCCAAGGCACACTACCCCATGGTACATGTGTATGGGTACTC
TGTAGCTGTGTGTGTACAGGCTCTATACGTTTGGATCCCGCCGCTTCCAT
GCTGTGGCGATGAACCGGTCATCACATGTCATACTGCATACGCATGGGTT
GGCGGTTGGCGGTTGGTGGACTGCGGCCGAACCAAGTTCGACATGAATAT
GGAACGCACTTTGGTACTCTGTTGTATCATGTACCCGATATATACGGGAT
GTATGGTATGCTGGACGGAACGCTTCTGTGGCCTCAGACGGGATGCTCCG
TGCACCTTTGGATCCCGCCGTGGGCATGCTTCGACGCTGTGACGAGCATG
ATACTCACAAAGCACAAAGCACTACAGCAGTACACGTATGAATAATCGGT
GAGGATGACAGTGCTGTGTGATGGGTTCACACGTCGGACAGATCATGATC
TGCATGGCCCGGGTCACGCGGATCACCACGCCCGAAACATGTACGAATGA
CCCGGGTTGTACAGGTCAGCAGCTGGGAAACGTATGCGAAAGACCTGTGT
CCTACATATCAGTAACTGGAAAACATGTACAGGTCTTTTGATTGTACAGA
TCACTATCTGGGAAACATGGACTAAGGACTCAGGTTATACAGGTCACCAA
GTGGGAAACATGTACAGATATTTTGATTGTACAGATCAGTAGGTTGAAAA
CATGTACCGCGGTACAGATCTTCTGATTGTACAGATCAGCAGCTGGTAAG
CATGTGCGAAGGACCTATGTACAGTGCTACAGATCAGTAGCTGGGAAACA
TGTACAGATCCAGTGACTGTACAGATCAGTAGCAAGGAAACGTGTACAGA
TAATACAACTCACACAGATCGTGGCGATCTGCTACAAAAGACCCGTACTG
ATCCGTAGGGACCTGATCTGTCTGACGTGTGGATCCTTATCCTTTGATTG
TACGTATCACTATCTGGAAAAAATGTACAGATCTTTTGATTGTACAGATC
ACTATCTGGGAAACATGTACATATCCTTTGATTTTACAGATCAGTAGGTT
CAAAACATGTGCACATCCTTTGATTTTACAGATCAGTAGGTGGAAAACAT
GTGCACATCCTTTGATTGTATAGATCAGCAACTGGGAAACATGTGCGAAG
GACCTATGTCCTACAGATCAGTAGCTGGGAAACATTTACAGATCCTTTGA
TTGTACAGATCAGCAACTGGTAAACATGTGCGAAGGACCTATGTCCTACA
GATCAGTACCTGGGAAATATTTACATGTCCTTTGGCTGTACAGATCAGTA
GCAAGGAAACGTGTACAGACCATACAACTCACACATATTATGACGATCTG
TGTGACAAAGACCCGCACTGATCCGTAGGGACCTCATCTGTCCGACGTGT
GAGTGGGGTGCTGAACTGGACCGCAGTTCGAGATGAAAATGGAGCGTATT
GCGTACCTGGTACGTATGATTTTTCACCGGGGATACAGTATGTGGGAATG
TGGGATGATCGATGGATGCCTGGTGACCGCAGACGGGATGATCGGGACAA
GGCCGGTCGGTGGGATGTGCGAGAAAGTAGAAGCAAGAGCATTGCCTTAG
ACCAACAACATCCAGCCTCGTGCTCCGACCTCGTCCTGATACTGAAGTCT
CGACAAATCAGCGAGCTGCCGGGGGGTGCCGAGCCCAATGGAAGATGGAC
ATGGAACGAACGTGCCAGATGGTAGATGTACCGGGTAGAGATGGGACGGT
TAGTAGCTTTTGACGGCAGGCAGGTGATTCAGATAAGGGTGGTGCTGCCA
AATGTGTGAAAACAAGCAACTATTTACTATTATAGTTGTGATTTACACAT
CATTGCAATATGATAGATGCAGACAAGCTCCCAGGGGAAATATGACGTGG
AAATACGTGCTCAGGCGACGGTATACAAGGACCGAAGGCACTTGTCGAGA
TTGACTGATGGACACAGCAGCAGTCCAAAGCGTATACAAGTACGCTTTGT
AGCTCTATGCAGATCATACTATATACGAGGGCTAAACACCATAATGGTAT
CGGTTTAACCTTTAGCCCGATGGCTCAGAGGCCTAACGGCCATCATAACG
ACATCCCCGGGAGATAAATTGACAGAGTTATACAAGTATTTTAATGGCAT
GAATGATTTTGATCGATTACTGTCGCCCTAACGCAAGGATAGTATCTGGA
TTTGGCAGGTTGGTCGGCCGTCGCATGTATGGCAACATATTCTGCTGTTT
GTACCCTATCGGAGCTTCTGGCCTTGTTGTCCTTTCAATGTTGCACAAAC
AAAGTGAAACGTGCTTGTGTGTGTTTATTCTGTTACATGGTAATTACACG
GTAACTGCATGGTGATTGGGGAGGGTTCCAGAAGTGGAATCTGGGTTTTG
AAATAGCGAGAGTATCGGTCTTTCGCATGTCCAGAGAATCGGTCGGAGAA
TCGGTCGGAGAACGTTCGGAGAGTGTTACGAACGGAGGCATTCCCTCGAG
ATTCTATAACGGCTTATGGTAGTTACCGTTACCTCAGTCAGTCAGTCTGC
ATTGGTATCGCAGTAGAGCTCAGGCTATGATAGTGCACACCGCCGAGGGC
TAGTTGGAAGGACAGGCAGGCGGCCGGACAACTGATGCTGTTTATTGTTT
ATTGTTTATTGTTTATTGTTTATTGCCGGGCTTTCTCCCGAAGACAGTAA
ATGTTAATGTTTATAAACACAGAACTATACTATTAATAGCATTGGGGTCC
AACCAATATTTTGGGTATGATAGAGGAAACAGATGGCCCAATCTAACTTA
ACTCAGTGGAAGCCTACATTATATACGATGATATGGTGTCACATTACAAT
TAACAGGTAACTCTGGGAATGGGTAGTTTTTCCTTGTGATATTTTTTGTA
TCAACTTGTATTCTAGCCTGTTTTTACCTGTGAGGTTTTTTGTCAGCTTG
TATTCGAGCCTGTACTATTAATATCATACCGGCGGTACATATACGCGGGG
ACACATGCTGCTCACGATTTGGAAATGGAGTTTTTCTTCTCGCGCGATGT
ATATGATATACACTAGTCCACCTGTACATTTATAGCCCCCCCCCAGCACA
TATGCCTTACTGAGAGAGGAAAGGANNNNNNNNNNCTTTCAGTTTCCCCT
GAACCAGTGTGCTTGAGAGTTAGGGATGTACATGGGAACTAGATTTTGTT
TTTTATAAATCATACCCACCCTTATTTGCGCATCCGTTTGTTTTCGAACC
TATTCTGCCCGTCCTTCCTCCTAGCCCATACACGCTACAGTAGTGTGTTC
AGCAATAATAGTAATGGAGAAGCGGTCGACAATCTCCCCCCCCCCTTTAT
TTAGATTGCTCCACATTGCGGCCGGGCCGGTTGTAAGTGTGACAGTCAAT
TAGTCATTAATCATCCAATCAAATAATCATTCAAGCAATCAATTCATCAG
TCAAACAATGTTCAGCTTTGGTTCGAAGGCCCGCTCTCCGGCAGGTGTCA
ACAGTTATAATGTTATAATGGTGTCTGCCTGCCTCCGCGTCCCGCGTCGC
TTGACCCCTGCCTCACAGTTACCCCGAGCTTGGGAACACACCAGCTCTCC
AACGTCGAGAAGCGTCACCATGAGGTAGGTCTGTCTATTGGAAGAGAAGC
GTCCCCGTAATGTAGGTATGTCTGTCGATCGGAAGAGAGCCGCCCTCATG
AGGTAGGTCTGCTTACGGAAAGGAGAAGCGTCAATATGAAGTAGGTACGT
TTAAGGACGGTGGGCGTTGTCGCATCATTTACTATCAATACGTCTCGCCG
TGCAACTTGAGTACATCCAAGTACTGCTGTAATGGCCGTGTTAAAATCCC
TTTTGTGGCTGTCTTCGAGGCGCCATGTAGCCATGTAAGGGAGACTGGTC
CTTCGATGGTGCAGGATGGTGGTTGTCTCTGGTGCTCCCAAACTCTCACT
CACCTTGGTAGCTTGATTACAACATGTCGGGAGCGAGCGCCCCTAGCTTG
CAGGAAAACTAGGCAATTATCAGGGCGAAACAATTGCTGCTCAATGGCTT
CTTGAAGGTTTGGTCTTAAATGAAATGTCGGCTCGAAGACCTTGCAATAT
ACCGTACATTTTAAAGGTTTTTGTTGACGTTTTTCAGGCCGGCAAGAGTG
CGCATGATGTTGTATACTATTAATAGCATGGAATAAGGCCGCACGATATT
GTTTTCTGGTTTGGGTTGTTTGGCATACTTCCTGGGACATTTGGTCCTGA
CTATAATATTAGGTACAGTAGCCACGGCTATTGATAGTTAATACGCCCGT
GAGGAAATTCCTATCAAACTCTTTTCAACGCTTGGCGCTCAACACAAACA
TCAAGTTGTTTGGCATCACTTTTTCATGCAGGAGTCCGGCCTCACAATAT
CCTTATCTAAAATCGCTGTTGTATTAAACATCGGTCAAAGCGCCATTGAT
TAATAAATATACTACTAATACTGTGTACCTCCGACATATTAGACTGACTC
TTGTATATACAATGCATCGCGGTGAACGGTATTCTGTACGTAACCACCGC
GACGGATCTCACGCGCTCCCGCAGCTGGGTGCACAGCGCAATGAGCTGTT
CGGGGAGATGCAGGAGGTGCTGGGGCAGCAGCAAGAGGAGGTAGCCGCTT
GCAGGGCAGCCCTCGCGCTCAGTCAGCAGAAGGGCCAGGACGCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8199:3614..8657-

>mRNA_S-dermatodea_contig8199.16391.1 ID=mRNA_S-dermatodea_contig8199.16391.1|Name=mRNA_S-dermatodea_contig8199.16391.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at S-dermatodea_contig8199:3614..8657- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCAGAGCAAGAGCAATGGACGCAAGCCAGACCACGGGTGCGGCAAG
GATGCTTGCACCACTGTTTCTGACCAGGCTTCTGGTCATCACAGTAGCTT
TCACAGATGGGCAGAGCAAGAGCAATGGACGCAAGCCAGACCACGGGTGC
GGCAAGGATGCTTGCACCACTGTTTCTGACCAGGCTTCTGGTCATCACAG
TAGCTTTCACAGTTACCCCGAGCTTGGGAACACACCAGCTCTCCAACGTC
GAGAAGCGTCACCATGAGTTACCCCGAGCTTGGGAACACACCAGCTCTCC
AACGTCGAGAAGCGTCACCATGAGCTGGGTGCACAGCGCAATGAGCTGTT
CGGGGAGATGCAGGAGGTGCTGGGGCAGCAGCAAGAGGAGGTAGCCGCTT
GCAGGGCAGCCCTCGCGCTCAGTCAGCAGAAGGGCCAGGACGCACTGGGT
GCACAGCGCAATGAGCTGTTCGGGGAGATGCAGGAGGTGCTGGGGCAGCA
GCAAGAGGAGGTAGCCGCTTGCAGGGCAGCCCTCGCGCTCAGTCAGCAGA
AGGGCCAGGACGCA
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