mRNA_S-dermatodea_contig81920.16387.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81920.16387.1
Unique NamemRNA_S-dermatodea_contig81920.16387.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig81920.16387.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.520e-26
Identity = 55/113 (48.67%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    1 LLAPLFDCTKDVATLGRGLSCVAHMLLVIFWTHRTASMPGQLYYDTQVTIRGILYVIAQAKVHCPAEPLFIFQIGTDGLENLFAMARTLTHSSNFDMKELGDRLGAAVSVEEI 339
            LL  L +  + ++ L RGL+ VA +LL ++   +T   PGQL +D Q TIR + YV+ +A+V CP E L+++ IGTDGLENLFA+ RTLTH+SN D KE  +R GA + VE++
Sbjct:   42 LLDVLLNSEEKISELLRGLARVAFLLLFVYRMKKTRFKPGQLDHDLQATIRLLFYVVLEAQVRCPRERLYLWMIGTDGLENLFAIVRTLTHASNVDAKEAIERFGAVIGVEQV 154          
BLAST of mRNA_S-dermatodea_contig81920.16387.1 vs. uniprot
Match: A0A4Z0A4Z5_9AGAM (Uncharacterized protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0A4Z5_9AGAM)

HSP 1 Score: 113 bits (282), Expect = 1.030e-25
Identity = 63/185 (34.05%), Postives = 95/185 (51.35%), Query Frame = 1
Query:   10 PLFDCTKDVATLGRGLSCVAHMLLVIFWTHRTASMPGQLYYDTQVTIRGILYVIAQAKVHCPAEPLFIFQIGTDGLENLFAMARTLTHSSNFDMKELGDRLGAAVSVEEIYSRYPEYNRPSRRL----NQSLDHTNPPNWLDGGKDKTATGNCDIREVDVADCWAGGRSDAVKIL---RLHPDFS 543
            P+F  +  +    R LS  AHM   +F  H+ + M GQLY DTQ  ++     IA+  +  P +  +++Q+G+D LE +F   RT++H  N D  +L DRL A+     IYSR+PE+NR  RR     N+ +DH NP  +          G+  ++   +A  W  GR DA   L    +H DF+
Sbjct:  655 PMFSLSDQL----RSLSTYAHMCFALFSRHKASFMTGQLYSDTQALVKAAFICIARQSLLDPTKAFYLYQLGSDRLEEIFCEVRTMSHDCNCDTLQLCDRLSASADCIAIYSRHPEWNRGHRRTSYSGNEGVDHVNPTYFK---------GDLVVQNTYLASAWNSGRIDASNYLCARGVHFDFT 826          
BLAST of mRNA_S-dermatodea_contig81920.16387.1 vs. uniprot
Match: UPI001F8B2135 (uncharacterized protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=UPI001F8B2135)

HSP 1 Score: 112 bits (279), Expect = 2.630e-25
Identity = 60/181 (33.15%), Postives = 95/181 (52.49%), Query Frame = 1
Query:    1 LLAPLFDCTKDVATLGRGLSCVAHMLLVIFWTHRTASMPGQLYYDTQVTIRGILYVIAQAKVHCPAEPLFIFQIGTDGLENLFAMARTLTHSSNFDMKELGDRLGAAVSVEEIYSRYPEYNRPSRRLN----QSLDHTNPPNWLDGGKDKTATGNCDIREVDVADCWAGGRSDAVKILRLH 531
            LL P  D T  ++     LS  AH   +++  H +A M  QLY D Q  I+ I   +A+ ++   ++P +I+Q+G+D LE LFA  RT +H  N DM +L +RL  + ++ +IY+R+PE+NR  RR +    + +DH NP         +   G+  ++ V +   W  G   A K L  H
Sbjct:  764 LLDPFIDPTLSLSEQLTRLSTFAHAAFILYLKHGSAFMSNQLYSDIQALIKAIFVCVARQQLLDGSKPFYIYQVGSDRLEELFAEVRTQSHDRNCDMAQLAERLSISANIVQIYNRHPEWNRGQRRRSFTGREGVDHVNP---------RFFQGDMVVKNVQLETVWHSGLIAAEKTLHTH 935          
BLAST of mRNA_S-dermatodea_contig81920.16387.1 vs. uniprot
Match: A0A1C7LQ91_GRIFR (Uncharacterized protein n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7LQ91_GRIFR)

HSP 1 Score: 109 bits (272), Expect = 2.270e-24
Identity = 60/178 (33.71%), Postives = 94/178 (52.81%), Query Frame = 1
Query:    4 LAPLFDCTKDVATLGRGLSCVAHMLLVIFWTHRTASMPGQLYYDTQVTIRGILYVIAQAKVHCPAEPLFIFQIGTDGLENLFAMARTLT-HSSNFDMKELGDRLGAAVSVEEIYSRYPEYNRPSRRLN----QSLDHTNPPNWLDGGKDKTATGNCDIREVDVADCWAGGRSDAVKIL 522
            + P +  T  V  L +     AHM  ++F +H    MP QLY DTQVTI+ I++ I + +     +P +IF  G D LENLF   R    H+ NF++K++ +R GAA+ ++ +++ +P  +R  RRL     + +DH N  +W         TGN  +  V++  CWA G   A + L
Sbjct:  546 IQPEWSLTMQVTLLSK----YAHMAFMLFRSHGVNFMPAQLYGDTQVTIKNIMFCITKQQELDNTQPFYIFDCGDDKLENLFGRIRMQGGHNPNFNLKQIAERAGAAMDLDAVFTHHPNLDRGHRRLKVTWTEKIDHLNHESW---------TGNVFVHSVNLQYCWARGHEAAQEAL 710          
BLAST of mRNA_S-dermatodea_contig81920.16387.1 vs. uniprot
Match: UPI0020078AD7 (uncharacterized protein n=1 Tax=Antrodia serialis TaxID=139415 RepID=UPI0020078AD7)

HSP 1 Score: 106 bits (265), Expect = 1.980e-23
Identity = 55/161 (34.16%), Postives = 88/161 (54.66%), Query Frame = 1
Query:   55 LSCVAHMLLVIFWTHRTASMPGQLYYDTQVTIRGILYVIAQAKVHCPAEPLFIFQIGTDGLENLFAMARTLTHSSNFDMKELGDRLGAAVSVEEIYSRYPEYNRPSRRLN----QSLDHTNPPNWLDGGKDKTATGNCDIREVDVADCWAGGRSDAVKILR 525
            LS  AHM   ++  H +A +  QLY D Q  I+ +   +A+ ++   A+P +++Q+G+D LE LFA   T +H  N DM +L +RL  +  + +IY+R+PE+NR  RR +    + +DH NP         +  TG+  +R V++   W  G   A K LR
Sbjct:  757 LSKFAHMSFALYLQHGSAFLSNQLYSDIQALIKAVYVCVARQQLLDDAQPFYLYQVGSDRLEELFAEVHTQSHDRNCDMAQLAERLAISAEIVDIYNRHPEWNRGQRRRSFTGREGVDHVNP---------RFYTGDMTVRNVNLGTVWHSGLIAADKALR 908          
BLAST of mRNA_S-dermatodea_contig81920.16387.1 vs. uniprot
Match: UPI001F8821D6 (uncharacterized protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=UPI001F8821D6)

HSP 1 Score: 103 bits (256), Expect = 3.080e-22
Identity = 54/171 (31.58%), Postives = 91/171 (53.22%), Query Frame = 1
Query:   40 TLGRGLSCVA---HMLLVIFWTHRTASMPGQLYYDTQVTIRGILYVIAQAKVHCPAEPLFIFQIGTDGLENLFAMARTLTHSSNFDMKELGDRLGAAVSVEEIYSRYPEYNRPSRRLN----QSLDHTNPPNWLDGGKDKTATGNCDIREVDVADCWAGGRSDAVKILRLH 531
            +L + L+C+A   HM  +++  H +  M  QLY D Q  I+ +   +A+ ++    +P +++QIG+D LE LFA  RT +H  N DM +L +RL  +  + +IY+R+P++NR  RR +    + +DH NP         +   G+  ++ V +   W  G   A K L  H
Sbjct:  312 SLSQQLTCLAKFAHMAFILYLQHGSTFMSNQLYSDIQALIKAVYVCVARQQLLDDTKPFYLYQIGSDRLEELFAEVRTQSHDRNCDMAQLAERLAISADIIQIYNRHPDWNRGQRRRSFTGREGVDHVNP---------RFYEGDMVVKNVCLETVWRSGLIAADKTLHTH 473          
BLAST of mRNA_S-dermatodea_contig81920.16387.1 vs. uniprot
Match: A0A165WRF7_9AGAM (Uncharacterized protein n=1 Tax=Sistotremastrum suecicum HHB10207 ss-3 TaxID=1314776 RepID=A0A165WRF7_9AGAM)

HSP 1 Score: 102 bits (253), Expect = 7.100e-22
Identity = 61/187 (32.62%), Postives = 92/187 (49.20%), Query Frame = 1
Query:    1 LLAPLFDCTKDVATLGRGLSCVAHMLLVIFWTHRTASMPGQLYYDTQVTIRGILYVIAQAKVHCPAEPLFIFQIGTDGLENLFAMARTLT-HSSNFDMKELGDRLGAAVSVEEIYSRYPEYNRPSRRLN-----------QSLDHTNPPNWLDGGKDKTATGNCDIREVDVADCWAGGRSDAVKILR 525
            LL P  D T  +      LS  AH+  V+F   RT  MP QLY D  + I+ + + +A+ + + P     I  +GTD LE+LF M RT+T + SN D+ +L  RL +A    EI++++P+++R  RRL+             +DH NP +W+         GN  +  V +   W  G   A   LR
Sbjct:  432 LLTPYCDVTLSLGDQLALLSQAAHISFVLFRHARTKFMPTQLYADQMIMIKNVYFCVAKYQAYNPDSQFHIILLGTDRLESLFGMVRTMTGNDSNADLYQLSHRLSSAAHCSEIFAKHPDWDRSPRRLHLPRWTGPGRLTSDMDHLNPASWI---------GNVWVSNVSLITEWRRGSDTAETKLR 609          
BLAST of mRNA_S-dermatodea_contig81920.16387.1 vs. uniprot
Match: UPI0004622351 (uncharacterized protein n=1 Tax=Trametes versicolor (strain FP-101664) TaxID=717944 RepID=UPI0004622351)

HSP 1 Score: 100 bits (248), Expect = 3.640e-21
Identity = 57/180 (31.67%), Postives = 90/180 (50.00%), Query Frame = 1
Query:    4 LAPLFDCTKDVATLGRGLSCVAHMLLVIFWTHRTASMPGQLYYDTQVTIRGILYVIAQAKVHCPAEPLFIFQIGTDGLENLFAMARTLTHSSNFDMKELGDRLGAAVSVEEIYSRYPEYNRPSRRLNQSL----DHTNPPNWLDGGKDKTATGNCDIREVDVADCWAGGRSDAVKILRLH 531
            L P  +    ++   R L+  AH+  +++  HRT+ M  QLY DTQ+ ++ I++ + + +V   ++P +I   GTD LE  F   RT  H+ NFD   L  +L  + ++  I  ++PE NR  RR+  S     DHTNP          +  G+  +  V +   W  GR DA +IL  H
Sbjct:  313 LEPFINLDLSLSEQLRLLARYAHLACIMYRHHRTSFMTSQLYIDTQMIVKNIVFSVKKQQVLDSSKPFYIIHDGTDRLEMAFCDVRTQDHARNFDTLTLSRKLSISANINAIMLKHPELNRGHRRIKLSNREGPDHTNPA---------STRGDLVVSNVSLQLVWKQGREDAEQILAAH 483          
BLAST of mRNA_S-dermatodea_contig81920.16387.1 vs. uniprot
Match: R7S3Q1_PUNST (Uncharacterized protein (Fragment) n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=R7S3Q1_PUNST)

HSP 1 Score: 94.7 bits (234), Expect = 1.550e-20
Identity = 51/169 (30.18%), Postives = 87/169 (51.48%), Query Frame = 1
Query:    7 APLFDCTKDVATLGRGLSCVAHMLLVIFWTHRTASMPGQLYYDTQVTIRGILYVIAQAKVHCPAEPLFIFQIGTDGLENLFAMARTLTHSSNFDMKELGDRLGAAVSVEEIYSRYPEYNRPSRRLNQSLDHTNPPNWLDGGKDKTATGNCDIREVDVADCWAGGRSDAV 513
            +P    T+ +A L R    + H+   ++  + +A +  QLY D     +   +V+AQ K+   ++ ++++Q+G+D LE LF   RT TH SN+D+ +L   L  + ++ E+Y+R P+ NR  RRL   LDH NP         +  TG+      ++   W  GR  A+
Sbjct:   93 SPSLCLTEQLANLSR----LQHINFALYRKYGSAYISPQLYSDLCALGKSAFFVVAQQKLLDDSQSVYLYQLGSDRLEELFGEVRTSTHDSNYDILQLSHELSGSAALVEVYNRNPDLNRGHRRLKFGLDHVNP---------RFFTGDLTACNANLTTAWNSGRIQAL 248          
BLAST of mRNA_S-dermatodea_contig81920.16387.1 vs. uniprot
Match: UPI001B85E366 (uncharacterized protein n=1 Tax=Suillus plorans TaxID=116603 RepID=UPI001B85E366)

HSP 1 Score: 98.2 bits (243), Expect = 1.710e-20
Identity = 59/180 (32.78%), Postives = 91/180 (50.56%), Query Frame = 1
Query:    1 LLAPLFDCTKDVATLGRGLSCVAHMLLVIFWTHRTASMPGQLYYDTQVTIRGILYVIAQAKVHCPAEPLFIFQIGTDGLENLFAMARTLT-HSSNFDMKELGDRLGAAVSVEEIYSRYPEYNRPSRRLN-----QSLDHTNPPNWLDGGKDKTATGNCDIREVDVADCWAGGRSDAVKIL 522
            +L P  +    +    + LSC AH+   IF  HR   MP QLYYDTQ +++G+++ IA+ ++       F+   G D LE +F  +R +  H+S     +  DRLGAA  +  ++ R+PE +   +RL+     + +DH N   W    K    +G+CD+  V     W  GR  AV IL
Sbjct:  719 ILVPFINTKLSLTEQVQSLSCYAHLAFSIFRVHRHLFMPFQLYYDTQTSVKGVVFNIAKQQLLDLRASFFLGDCGDDRLELMFGRSRMIGGHNSGCSYAQALDRLGAAKDINTVFKRHPELDPGHQRLSLGKRIEDVDHINRLMW----KGDIISGHCDLPSV-----WRQGREMAVAIL 889          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81920.16387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2E6_9PHAE2.520e-2648.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4Z0A4Z5_9AGAM1.030e-2534.05Uncharacterized protein n=1 Tax=Hericium alpestre ... [more]
UPI001F8B21352.630e-2533.15uncharacterized protein n=1 Tax=Fomitopsis rosea T... [more]
A0A1C7LQ91_GRIFR2.270e-2433.71Uncharacterized protein n=1 Tax=Grifola frondosa T... [more]
UPI0020078AD71.980e-2334.16uncharacterized protein n=1 Tax=Antrodia serialis ... [more]
UPI001F8821D63.080e-2231.58uncharacterized protein n=1 Tax=Fomitopsis rosea T... [more]
A0A165WRF7_9AGAM7.100e-2232.62Uncharacterized protein n=1 Tax=Sistotremastrum su... [more]
UPI00046223513.640e-2131.67uncharacterized protein n=1 Tax=Trametes versicolo... [more]
R7S3Q1_PUNST1.550e-2030.18Uncharacterized protein (Fragment) n=1 Tax=Punctul... [more]
UPI001B85E3661.710e-2032.78uncharacterized protein n=1 Tax=Suillus plorans Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81920contigS-dermatodea_contig81920:30..572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue9.8e-36
Seed eggNOG ortholog2880.D7G3X4
EggNOG OGs2DMFT@1,2S64X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size543
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925327.5881193-CDS-S-dermatodea_contig81920:29..5721622925327.5881193-CDS-S-dermatodea_contig81920:29..572Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81920 30..572 -
1694079858.1465905-CDS-S-dermatodea_contig81920:29..5721694079858.1465905-CDS-S-dermatodea_contig81920:29..572Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81920 30..572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81920.16387.1prot_S-dermatodea_contig81920.16387.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81920 30..572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81920.16387.1

>prot_S-dermatodea_contig81920.16387.1 ID=prot_S-dermatodea_contig81920.16387.1|Name=mRNA_S-dermatodea_contig81920.16387.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=181bp
LLAPLFDCTKDVATLGRGLSCVAHMLLVIFWTHRTASMPGQLYYDTQVTI
RGILYVIAQAKVHCPAEPLFIFQIGTDGLENLFAMARTLTHSSNFDMKEL
GDRLGAAVSVEEIYSRYPEYNRPSRRLNQSLDHTNPPNWLDGGKDKTATG
NCDIREVDVADCWAGGRSDAVKILRLHPDFS
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mRNA from alignment at S-dermatodea_contig81920:30..572-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81920.16387.1 ID=mRNA_S-dermatodea_contig81920.16387.1|Name=mRNA_S-dermatodea_contig81920.16387.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at S-dermatodea_contig81920:30..572- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTCTCGCACCATTGTTCGACTGTACGAAGGATGTGGCTACGCTTGGTCG GGGGCTTTCGTGCGTGGCGCACATGCTGCTAGTTATATTCTGGACGCACA GAACAGCATCCATGCCTGGGCAGCTCTACTATGACACCCAAGTGACGATT CGCGGGATCTTGTACGTTATTGCCCAAGCTAAGGTACACTGCCCGGCAGA GCCCTTGTTCATCTTTCAAATTGGAACGGATGGTCTCGAAAATCTTTTCG CGATGGCGCGAACCCTGACTCACTCTAGCAACTTCGACATGAAGGAACTA GGTGATCGTCTCGGTGCTGCGGTTTCGGTCGAAGAGATCTACAGCAGATA CCCGGAGTATAACCGCCCATCTCGTCGTCTAAACCAATCGTTGGACCACA CCAACCCACCAAACTGGCTGGATGGAGGCAAAGACAAAACAGCCACCGGG AATTGTGACATTCGAGAAGTGGACGTGGCTGACTGCTGGGCGGGTGGGCG GTCGGATGCTGTCAAAATCTTGAGGCTTCACCCGGACTTCTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig81920:30..572-

>mRNA_S-dermatodea_contig81920.16387.1 ID=mRNA_S-dermatodea_contig81920.16387.1|Name=mRNA_S-dermatodea_contig81920.16387.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at S-dermatodea_contig81920:30..572- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTCTCGCACCATTGTTCGACTGTACGAAGGATGTGGCTACGCTTGGTCG
GGGGCTTTCGTGCGTGGCGCACATGCTGCTAGTTATATTCTGGACGCACA
GAACAGCATCCATGCCTGGGCAGCTCTACTATGACACCCAAGTGACGATT
CGCGGGATCTTGTACGTTATTGCCCAAGCTAAGGTACACTGCCCGGCAGA
GCCCTTGTTCATCTTTCAAATTGGAACGGATGGTCTCGAAAATCTTTTCG
CGATGGCGCGAACCCTGACTCACTCTAGCAACTTCGACATGAAGGAACTA
GGTGATCGTCTCGGTGCTGCGGTTTCGGTCGAAGAGATCTACAGCAGATA
CCCGGAGTATAACCGCCCATCTCGTCGTCTAAACCAATCGTTGGACCACA
CCAACCCACCAAACTGGCTGGATGGAGGCAAAGACAAAACAGCCACCGGG
AATTGTGACATTCGAGAAGTGGACGTGGCTGACTGCTGGGCGGGTGGGCG
GTCGGATGCTGTCAAAATCTTGAGGCTTCACCCGGACTTCTCCCTTCTCG
CACCATTGTTCGACTGTACGAAGGATGTGGCTACGCTTGGTCGGGGGCTT
TCGTGCGTGGCGCACATGCTGCTAGTTATATTCTGGACGCACAGAACAGC
ATCCATGCCTGGGCAGCTCTACTATGACACCCAAGTGACGATTCGCGGGA
TCTTGTACGTTATTGCCCAAGCTAAGGTACACTGCCCGGCAGAGCCCTTG
TTCATCTTTCAAATTGGAACGGATGGTCTCGAAAATCTTTTCGCGATGGC
GCGAACCCTGACTCACTCTAGCAACTTCGACATGAAGGAACTAGGTGATC
GTCTCGGTGCTGCGGTTTCGGTCGAAGAGATCTACAGCAGATACCCGGAG
TATAACCGCCCATCTCGTCGTCTAAACCAATCGTTGGACCACACCAACCC
ACCAAACTGGCTGGATGGAGGCAAAGACAAAACAGCCACCGGGAATTGTG
ACATTCGAGAAGTGGACGTGGCTGACTGCTGGGCGGGTGGGCGGTCGGAT
GCTGTCAAAATCTTGAGGCTTCACCCGGACTTCTCC
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