mRNA_S-dermatodea_contig8174.16371.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8174.16371.1
Unique NamemRNA_S-dermatodea_contig8174.16371.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8174.16371.1 vs. uniprot
Match: A0A6H5KS36_9PHAE (Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS36_9PHAE)

HSP 1 Score: 540 bits (1392), Expect = 1.870e-178
Identity = 377/700 (53.86%), Postives = 433/700 (61.86%), Query Frame = 1 
Query:  241 PLADFAEAYSGLRVRNRLLSAEDMRLRMKGRKVHRLAELRSAPTQALESQDPSDAWAAVGVLVSKSPRRQAANGGSYAIWTLSDLSRKENDISVFLFQEALGSHWTVCEGTLLAVLSAKVLPPKGAXXXXXXXXDQRLAFSVDSPWQVSRVGMAMDYALCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNRAQRQDPLRAKXXXXXXXXXXSGGNNNFRAMMQGKNAAPGHQNPILGRATSTPASTRTGPASCMATP-RRAPTISLSGIMGDGARRREDIGAARFGGSGGANLR----PPTKDAKPLRPSATRAAGRTT---------------------------------------MLSALSAACGGASASRPSSGLRENRPRGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEDLMGLPWAYGNTEASGQGAATKIPKRRTGNXXXXXXXXXXXXXXXXXXXRRRDCPPAAXXXXXXXXXXXXXXALA--ARPPAEAHPAGYMDGTVVVPAPSSVFLTMGQRCGVRGDGTRTHDGEKKLDEVKMLMNQRIIKQKADAQGIILRPQDPNA--SVGG-STNRPSILGAG---KKNARPGAASADALLGARGGAGGKVSDPFAKKVKTMSAVEKEVLLRRVSKYAGLAEEERAKDADRSMQRLENREAMADKAEEVTKMAVTVYHCKE 2184
            P ADF EA+SGLRVRNRLLSAEDMR+RM+GRKVHRL  LR+ P +ALESQDP+DAWAAVGVLVSKSPRRQAANGGS+++WTLSDLSR+EN++S+FLFQEALGSHWTVCEGTL+AV+ AKVLP KG          QRLAFSVDSPWQV+R+GM+MDY LCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNRAQR+ P+  K          S       ++ Q          P   RA     ST  G  +    P R AP  +LS I+G GARRRE +GA R  GS          P T  AK LRPSA RA+GRT                                        +LS   AA   A      +G   +  RG+                                     SEDL+ LPWAYG+          K P     N XXXXXXXXXXXXXXXXXX     P +               AL   ARPP EAHPAGYM G+V VPA S VFL M QRC VR DGTR+ +GEK L + ++LM QR +KQKAD +G++LRPQDPN+  S+G  S+ +PS L AG   +++ARPGA   + LL A GG GG   DP AKKVKTMSAVEKE+LLRRVSKYAGLAEEERAKDADRS+QRLE REAMADKAEEVTKMAVTV+ C +
Sbjct:   91 PPADFTEAFSGLRVRNRLLSAEDMRVRMRGRKVHRLDSLRTVPPRALESQDPADAWAAVGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGSHWTVCEGTLIAVVGAKVLPDKGGDGGNAP---QRLAFSVDSPWQVNRIGMSMDYGLCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNRAQRKAPVGNKTKGNTQQPALSMSAKLGASVRQQXXXXXXXXRPFQSRAGLPSRSTMPGQRAQQGPPPRAAPAPTLSSILGAGARRREGVGATRTFGSSXXXXXXXXXPSTVHAKALRPSAMRASGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLLSKSVAAXXSAGRDGNGNGAGWSGNRGAVGAATAGAATAGG-----------------------GSEDLLKLPWAYGDG---------KKP-----NNXXXXXXXXXXXXXXXXXXSGAPGPLSTGKKRKVEGRGDEEGALGKDARPPKEAHPAGYMSGSVAVPAESPVFLQMPQRCPVRQDGTRSAEGEKMLADAQVLMRQRALKQKADQRGLLLRPQDPNSASSIGKKSSGKPSGLRAGSNKRQSARPGA---NPLLAA-GGRGGDSGDPLAKKVKTMSAVEKELLLRRVSKYAGLAEEERAKDADRSVQRLEQREAMADKAEEVTKMAVTVFACTQ 746
[Close]
BLAST of mRNA_S-dermatodea_contig8174.16371.1 vs. uniprot
Match: D8LM23_ECTSI (Protein MCM10 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM23_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 1.650e-121
Identity = 269/631 (42.63%), Postives = 317/631 (50.24%), Query Frame = 1 
Query:  310 MRLRMKGRKVHRLAELRSAPTQALESQDPSDAWAAVGVLVSKSPRRQAANGGSYAIWTLSDLSRKENDISVFLFQEALGSHWTVCEGTLLAVLSAKVLPPKGAXXXXXXXXDQRLAFSVDSPWQVSRVGMAMDYALCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNRAQRQDPLRAKXXXXXXXXXXSGGNNNFRAMMQGKNAAPGHQNPILGRATSTPASTRTGPASCMATPRRAPTISLSGIMGDGARRREDIGAARFGGSGGANLRPPTKDAKPLRPSATRAAGRTTMLSALSAACGGASASRPSSGLRENRPRGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEDLMGLPWAYGNTEASGQGAATKIPKRRTGNXXXXXXXXXXXXXXXXXXXRRRDCPPAAXXXXXXXXXXXXXXALAARPPAEAHPAGYMDGTVVVPAPSSVFLTMGQRCGVRGDGTRTHDGEKKLDEVKMLMNQRIIKQKADAQGIILRPQDPNA--SVGG-STNRPSILGAG---KKNARPGAASADALLGARGGAGGKVSDPFAKKVKTMSAVEKEVLLRRVSKYAGLAEEERAKDADRSMQRLENREAMADKAEEVTKMAVTVYHCKE 2184
            MR+RM+GRKVHRL  LR+ P +ALESQDP+DAWAAVGVLVSKSPRRQAANGGS+++WTLSDLSR+EN++S+FLFQEALGSHWTVCEGTL+AV+ AKVLP KG          QRLAFSVDSPWQV+R+GM+MDY LCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNRAQR++P+  K            GN                                           + P +S+S               A+ G SG                           LS+ SAA                                                                                                                                                             ++VFL M QRC VR DGTR+ +GEK L + ++LM QR IK+KAD +G++LRPQDPN+  S+G  S+++PS L AG   ++ ARPGA   + LL A GG GG   DP AKKVKTMSAVEKE+LLRRVSKYAGLAEEERAKDADRS+QRLE REAMADKAEEVTKM VTV+ C +
Sbjct:    1 MRVRMRGRKVHRLDALRAVPPRALESQDPADAWAAVGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGSHWTVCEGTLIAVVGAKVLPDKGGGGGNAP---QRLAFSVDSPWQVNRIGMSMDYGLCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNRAQRKEPVGNKTK----------GNT------------------------------------------QQPALSMS---------------AKLGASG---------------------------LSSKSAA-------------------------------------------------------------------------------------------------------------------------------------------------------------AAVFLQMPQRCPVRQDGTRSAEGEKMLADAQVLMKQRAIKEKADQRGLLLRPQDPNSASSIGKKSSDKPSGLRAGSNKRQAARPGA---NPLLAA-GGRGGDGGDPLAKKVKTMSAVEKELLLRRVSKYAGLAEEERAKDADRSVQRLEQREAMADKAEEVTKMVVTVFACTQ 373
[Close]
BLAST of mRNA_S-dermatodea_contig8174.16371.1 vs. uniprot
Match: A0A835YRW3_9STRA (Protein MCM10 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW3_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.870e-27
Identity = 71/182 (39.01%), Postives = 102/182 (56.04%), Query Frame = 1 
Query:  259 EAYSGLRVRNRLLSAE-DMRLRMKGRKVHRLAELRSAPTQALESQDPSDAWAAVGVLVSKSPRRQAANGGSYAIWTLSDLSRKENDISVFLFQEALGSHWTVCEGTLLAVLSAKVLPPKGAXXXXXXXXDQRLAFSVDSPWQVSRVGMAMDYALCKGKRKDGKPCTMPVNKTEGGGFCEFHV 801
            E  SG+RV    L  E  +    +G K  +L  L S   QALES DP  AWA VGVLV KS +R  ++G  +  W LS L+    + ++ L ++AL SHW++CEG++L +L A  LP +             L F+ D+ WQV R+GM+ DYA+C G + +G  CT+ VNK+    +C +H 
Sbjct:    2 ERLSGIRVNKPTLVDEPSLEALRQGYKFFKLDTLPSIARQALESTDPMHAWATVGVLVRKSQQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSHWSICEGSVLMLLGAHALPKQ-----EQSSAGDPLVFAADASWQVVRIGMSSDYAVCGGTKANGARCTLAVNKSVSS-YCSYHA 177
[Close]
BLAST of mRNA_S-dermatodea_contig8174.16371.1 vs. uniprot
Match: A0A8B7YZI2_ACAPL (Protein MCM10 homolog n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YZI2_ACAPL)

HSP 1 Score: 127 bits (319), Expect = 1.620e-26
Identity = 68/192 (35.42%), Postives = 118/192 (61.46%), Query Frame = 1 
Query:  265 YSGLRVRNRLLSAEDMRLRMKGRKVHRLAELRSAPTQALESQDPSDAWAAVGVLVSKSPRRQAANGGSYAIWTLSDLSRKENDISVFLFQEALGSHWTVCEGTLLAVLSAKVLPPKGAXXXXXXXXDQRLAFSVDSPWQVSRVGMAMDYALCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNR--AQRQD 834
            YS +R+ N L+S+  +   M+GRK+ RL+ L+    + L++      W  +GV+VSK P + ++ G +++IW LSDLS  +  I++FLF +A  +HW   +G+++ +L+A ++PPK          D+ ++ S+D P ++  +G + D+  C+GKRKDGKPC+M VN      FC++HV + + +  A+R D
Sbjct:  341 YSQIRILNPLVSSARLDAMMEGRKMLRLSILQ----KYLDTGPNKGDWVTMGVIVSKLPPKTSSKGKTFSIWKLSDLSVCDQTITIFLFSKAHDNHWKTVQGSVIGLLNASIMPPKD------NGQDEGVSLSIDHPDKLLLLGTSKDFGHCRGKRKDGKPCSMVVNMAVSE-FCQYHVQSEYKKHSAKRSD 521
[Close]
BLAST of mRNA_S-dermatodea_contig8174.16371.1 vs. uniprot
Match: A0A4W3J4D2_CALMI (Protein MCM10 homolog n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3J4D2_CALMI)

HSP 1 Score: 125 bits (314), Expect = 2.930e-26
Identity = 68/194 (35.05%), Postives = 113/194 (58.25%), Query Frame = 1 
Query:  259 EAYSGLRVRNRLLSAEDMRLRMKGRKVHRLAELRSA-PTQALESQDPSDAWAAVGVLVSKSPRRQAANGGSYAIWTLSDLSRKENDISVFLFQEALGSHWTVCEGTLLAVLSAKVLPPKGAXXXXXXXXDQRLAFSVDSPWQVSRVGMAMDYALCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNRAQRQDP 837
            + +SGLR+RN L+S+ +M  +M+ RK+ RL++LRS   T+ LE+ D    W   GV+  K+  + ++NG +++IW L+DL     ++S+FLF      HW    GT++ +L+A  + PK           + +  SVD P ++  +G AMD   C+ ++K+G+PCT  VN  E G +CE+HV A + +   + P
Sbjct:   42 DRFSGLRIRNPLVSSTEMERKMQSRKMIRLSQLRSKLATENLEATD----WVTFGVVCKKTTPQSSSNGKTFSIWRLTDLCSSSLNLSLFLFGNVHKEHWKTETGTVIGLLNANPMKPKEG--------SEEVCLSVDHPQKILVMGEAMDMGCCRARKKNGEPCTQIVNLRECG-YCEYHVKAQYKKLSAKRP 222
[Close]
BLAST of mRNA_S-dermatodea_contig8174.16371.1 vs. uniprot
Match: V9KEH6_CALMI (Protein MCM10 homolog (Fragment) n=3 Tax=Callorhinchus milii TaxID=7868 RepID=V9KEH6_CALMI)

HSP 1 Score: 125 bits (314), Expect = 5.560e-26
Identity = 68/194 (35.05%), Postives = 113/194 (58.25%), Query Frame = 1 
Query:  259 EAYSGLRVRNRLLSAEDMRLRMKGRKVHRLAELRSA-PTQALESQDPSDAWAAVGVLVSKSPRRQAANGGSYAIWTLSDLSRKENDISVFLFQEALGSHWTVCEGTLLAVLSAKVLPPKGAXXXXXXXXDQRLAFSVDSPWQVSRVGMAMDYALCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNRAQRQDP 837
            + +SGLR+RN L+S+ +M  +M+ RK+ RL++LRS   T+ LE+ D    W   GV+  K+  + ++NG +++IW L+DL     ++S+FLF      HW    GT++ +L+A  + PK           + +  SVD P ++  +G AMD   C+ ++K+G+PCT  VN  E G +CE+HV A + +   + P
Sbjct:  228 DRFSGLRIRNPLVSSTEMERKMQSRKMIRLSQLRSKLATENLEATD----WVTFGVVCKKTTPQSSSNGKTFSIWRLTDLCSSSLNLSLFLFGNVHKEHWKTETGTVIGLLNANPMKPKEG--------SEEVCLSVDHPQKILVMGEAMDMGCCRARKKNGEPCTQIVNLRECG-YCEYHVKAQYKKLSAKRP 408
[Close]
BLAST of mRNA_S-dermatodea_contig8174.16371.1 vs. uniprot
Match: A0A1Y1IAS4_KLENI (Protein MCM10 homolog n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IAS4_KLENI)

HSP 1 Score: 120 bits (302), Expect = 2.310e-24
Identity = 67/200 (33.50%), Postives = 110/200 (55.00%), Query Frame = 1 
Query:  250 DFAEAYSGLRVRNRLLSAEDMRLRMKGRKVHRLAELRSAPTQALESQDPSDAWAAVGVLVSKSPRRQAANGGSYAIWTLSDLSRKENDISVFLFQEALGSHWTVCEGTLLAVLSAKVLPPKGAXXXXXXXXDQRLAFSVDSPWQVSRVGMAMDYALCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNRAQRQDPLRAK 849
            D  E +SGL+++N LL +  ++ R  G +  RL+++ SA     +   P+  WA   VL  K   R++A+G  Y +W ++DL+      S+FLF +A  +HW   EG+++ +L+AK    KG               S ++  QV ++G + D  LC+G RKDG PCTMP+NK+EG  +C++H   A+ + Q+    + K
Sbjct:  106 DNVEPHSGLKIKNPLLPSIVVKERFAGSRFLRLSKISSA----FQGGTPASPWATAAVLSEKMTPRESASGRKYGLWKVTDLAGFT--CSLFLFGDAFEAHWKESEGSVVGLLNAKYKEEKGGARSSAP-----FCLSAENGQQVFKLGTSADLGLCRGTRKDGMPCTMPINKSEGE-YCQYHAAGAYQKLQKLQKAQEK 293
[Close]
BLAST of mRNA_S-dermatodea_contig8174.16371.1 vs. uniprot
Match: UPI0018D815A9 (protein MCM10 homolog n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D815A9)

HSP 1 Score: 119 bits (299), Expect = 4.340e-24
Identity = 65/192 (33.85%), Postives = 116/192 (60.42%), Query Frame = 1 
Query:  265 YSGLRVRNRLLSAEDMRLRMKGRKVHRLAELRSAPTQALESQDPSDAWAAVGVLVSKSPRRQAANGGSYAIWTLSDLSRKENDISVFLFQEALGSHWTVCEGTLLAVLSAKVLPPKGAXXXXXXXXDQRLAFSVDSPWQVSRVGMAMDYALCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNR--AQRQD 834
            +S +R+ N L+S+  +   M+GRK+ RL+ L+    + L++   S  W  +GV+VSK P + ++ G +++IW LSDLS  +  +++FLF ++   HW   +G+++ +L+A V+PPK          D  ++ S+D P ++  +G + D+  C+G+RKDGK C+M VN      FC++HV + + +  A+R D
Sbjct:  335 HSHIRILNPLVSSSKLESMMEGRKMLRLSVLQ----KYLDTGPISGDWVTMGVIVSKLPPKTSSKGKAFSIWKLSDLSICDQPVTLFLFGKSHDDHWKTVQGSVVGLLNASVMPPKD------NAQDDGVSLSIDHPDKLLLLGTSKDFGHCRGRRKDGKACSMVVNMAVSE-FCQYHVQSEYKKHSAKRSD 515
[Close]
BLAST of mRNA_S-dermatodea_contig8174.16371.1 vs. uniprot
Match: UPI000D1CC1AD (protein MCM10 homolog n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1CC1AD)

HSP 1 Score: 115 bits (289), Expect = 8.070e-24
Identity = 73/199 (36.68%), Postives = 109/199 (54.77%), Query Frame = 1 
Query:  259 EAYSGLRVRNRLLSAEDMRLRMKGRKVHRLAELRSAPTQALESQDPSD----AWAAVGVLVSKSPRRQAANGGSYAIWTLSDLSRKENDISVFLFQEALGSHWTVCEGTLLAVLSAKVLPPKGAXXXXXXXXDQRLAFSVD--SPWQVSRVGMAMDYALCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNRAQRQDP 837
            E +SGLR+RNR LS E +          +L ELR    +AL+     D    +WA + VL  K   R ++N  +Y IW LS L+  E+ +S+FLF +A   HW    G+++A+  AKV              D++  FSV      Q++ VG ++D+A+C GKRKDG PC++PVN+ EG  +C+FH +AA    + + P
Sbjct:   96 EVHSGLRIRNRCLSREML--------TTKLMELRFVKLEALKHAVIGDGVRGSWATIAVLSDKGQPRVSSNSKNYVIWKLSCLN--ESTVSLFLFGDAYKEHWKEAVGSVIAIFDAKV-----------RHDDKKGDFSVSVADVNQLTVVGTSLDFAICNGKRKDGAPCSVPVNRKEGA-YCKFHALAARKNLRSKRP 272
[Close]
BLAST of mRNA_S-dermatodea_contig8174.16371.1 vs. uniprot
Match: A0A6G0X206_9STRA (zf-primase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X206_9STRA)

HSP 1 Score: 113 bits (283), Expect = 6.820e-23
Identity = 64/188 (34.04%), Postives = 104/188 (55.32%), Query Frame = 1 
Query:  259 EAYSGLRVRNRLLSAEDMRLRMKGRKVHRLAELRSAPTQALESQDPSDAWAAVGVLVSKSPRRQAANGGSYAIWTLSDLSRKENDISVFLFQEALGSHWTVCEGTLLAVLSAKVLPPKGAXXXXXXXXDQRLAFSVDSPWQVSRVGMAMDYALCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNRA 822
            E +SGLR+++RL+ A++M+ +M+GRK   LA + +APT+  ++   S  W AV V+  K+  +  +    Y +WTLSDL      +S+FL+ +A  SHW   EG+++A+++  ++P K            R A  V S   + ++G ++D+  CK     G  C +PVN T  G FC  H+ A F  A
Sbjct:  129 EEFSGLRIKDRLVPADEMKKQMQGRKFIHLASMDNAPTRQFDNS--STDWVAVAVMTKKNLAK--SEHSPYVVWTLSDLENAM--LSIFLYNDAYESHWKELEGSIVAIINPDIMPAK---------EHGRFALKVTSGANIVKLGTSIDFGFCKCLTIGGAQCKIPVN-TSNGDFCTLHMAARFKEA 300
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8174.16371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KS36_9PHAE1.870e-17853.86Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP ... [more]
D8LM23_ECTSI1.650e-12142.63Protein MCM10 homolog n=1 Tax=Ectocarpus siliculos... [more]
A0A835YRW3_9STRA3.870e-2739.01Protein MCM10 homolog n=1 Tax=Tribonema minus TaxI... [more]
A0A8B7YZI2_ACAPL1.620e-2635.42Protein MCM10 homolog n=1 Tax=Acanthaster planci T... [more]
A0A4W3J4D2_CALMI2.930e-2635.05Protein MCM10 homolog n=1 Tax=Callorhinchus milii ... [more]
V9KEH6_CALMI5.560e-2635.05Protein MCM10 homolog (Fragment) n=3 Tax=Callorhin... [more]
A0A1Y1IAS4_KLENI2.310e-2433.50Protein MCM10 homolog n=1 Tax=Klebsormidium nitens... [more]
UPI0018D815A94.340e-2433.85protein MCM10 homolog n=1 Tax=Patiria miniata TaxI... [more]
UPI000D1CC1AD8.070e-2436.68protein MCM10 homolog n=3 Tax=Selaginella moellend... [more]
A0A6G0X206_9STRA6.820e-2334.04zf-primase domain-containing protein n=1 Tax=Aphan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8174contigS-dermatodea_contig8174:223..7782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score386.0
Seed ortholog evalue4e-104
Seed eggNOG ortholog2880.D8LM23
Preferred nameMCM10
KEGG koko:K10736
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0003896,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0022616,GO:0030466,GO:0031298,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035861,GO:0040029,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045740,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0090734,GO:0097159,GO:0097747,GO:0140098,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903932,GO:1903934,GO:1904931,GO:1990837,GO:2000105,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001141
EggNOG free text desc.DNA replication origin binding
EggNOG OGsKOG3056@1,KOG3056@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03032
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionReplication factor Mcm10
Ec32 orthologEc-14_002590.1
Exons7
Model size2184
Cds size2184
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925326.389077-CDS-S-dermatodea_contig8174:222..3361622925326.389077-CDS-S-dermatodea_contig8174:222..336Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8174 223..336 -
1694079857.3222518-CDS-S-dermatodea_contig8174:222..3361694079857.3222518-CDS-S-dermatodea_contig8174:222..336Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8174 223..336 -
1622925326.4044282-CDS-S-dermatodea_contig8174:2274..23431622925326.4044282-CDS-S-dermatodea_contig8174:2274..2343Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8174 2275..2343 -
1694079857.3388777-CDS-S-dermatodea_contig8174:2274..23431694079857.3388777-CDS-S-dermatodea_contig8174:2274..2343Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8174 2275..2343 -
1622925326.4143717-CDS-S-dermatodea_contig8174:2879..31041622925326.4143717-CDS-S-dermatodea_contig8174:2879..3104Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8174 2880..3104 -
1694079857.3533146-CDS-S-dermatodea_contig8174:2879..31041694079857.3533146-CDS-S-dermatodea_contig8174:2879..3104Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8174 2880..3104 -
1622925326.4267707-CDS-S-dermatodea_contig8174:4224..50641622925326.4267707-CDS-S-dermatodea_contig8174:4224..5064Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8174 4225..5064 -
1694079857.3639739-CDS-S-dermatodea_contig8174:4224..50641694079857.3639739-CDS-S-dermatodea_contig8174:4224..5064Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8174 4225..5064 -
1622925326.437315-CDS-S-dermatodea_contig8174:5558..58131622925326.437315-CDS-S-dermatodea_contig8174:5558..5813Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8174 5559..5813 -
1694079857.3834496-CDS-S-dermatodea_contig8174:5558..58131694079857.3834496-CDS-S-dermatodea_contig8174:5558..5813Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8174 5559..5813 -
1622925326.4493241-CDS-S-dermatodea_contig8174:6479..68541622925326.4493241-CDS-S-dermatodea_contig8174:6479..6854Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8174 6480..6854 -
1694079857.3975923-CDS-S-dermatodea_contig8174:6479..68541694079857.3975923-CDS-S-dermatodea_contig8174:6479..6854Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8174 6480..6854 -
1622925326.46425-CDS-S-dermatodea_contig8174:7476..77821622925326.46425-CDS-S-dermatodea_contig8174:7476..7782Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8174 7477..7782 -
1694079857.4064236-CDS-S-dermatodea_contig8174:7476..77821694079857.4064236-CDS-S-dermatodea_contig8174:7476..7782Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8174 7477..7782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8174.16371.1prot_S-dermatodea_contig8174.16371.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8174 223..7782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8174.16371.1

>prot_S-dermatodea_contig8174.16371.1 ID=prot_S-dermatodea_contig8174.16371.1|Name=mRNA_S-dermatodea_contig8174.16371.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=728bp
MGDIAEEDIDLLDFFSASEVRSSSPTNALPKAQQATPVTGNTKRVSQEQA
ASSKPRAAFGDSSSPHTGSASPRSTKAPLFPLADFAEAYSGLRVRNRLLS
AEDMRLRMKGRKVHRLAELRSAPTQALESQDPSDAWAAVGVLVSKSPRRQ
AANGGSYAIWTLSDLSRKENDISVFLFQEALGSHWTVCEGTLLAVLSAKV
LPPKGAGGGGGGGGDQRLAFSVDSPWQVSRVGMAMDYALCKGKRKDGKPC
TMPVNKTEGGGFCEFHVVAAFNRAQRQDPLRAKAKGNGNGTGTSGGNNNF
RAMMQGKNAAPGHQNPILGRATSTPASTRTGPASCMATPRRAPTISLSGI
MGDGARRREDIGAARFGGSGGANLRPPTKDAKPLRPSATRAAGRTTMLSA
LSAACGGASASRPSSGLRENRPRGSGATATPTSSTPSASGNARASAGRGN
GGGSSSNSGGGASEDLMGLPWAYGNTEASGQGAATKIPKRRTGNGEGSGG
GGGGGGTGHGKNKRRRDCPPAAGGEGGGADDGERKAALAARPPAEAHPAG
YMDGTVVVPAPSSVFLTMGQRCGVRGDGTRTHDGEKKLDEVKMLMNQRII
KQKADAQGIILRPQDPNASVGGSTNRPSILGAGKKNARPGAASADALLGA
RGGAGGKVSDPFAKKVKTMSAVEKEVLLRRVSKYAGLAEEERAKDADRSM
QRLENREAMADKAEEVTKMAVTVYHCKE
back to top

mRNA from alignment at S-dermatodea_contig8174:223..7782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8174.16371.1 ID=mRNA_S-dermatodea_contig8174.16371.1|Name=mRNA_S-dermatodea_contig8174.16371.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7560bp|location=Sequence derived from alignment at S-dermatodea_contig8174:223..7782- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGGACATCGCGGAGGAGGACATCGACCTGCTGGATTTCTTCTCTGC
CAGCGAGGTCCGCTCGTCGTCGCCGACCAATGCGTTGCCCAAGGCACAGC
AGGCAACTCCCGTTACTGGGAACACGAAGAGGGTAAGCCAAGAGCAAGCA
GCGTCGTCCAAGCCTAGGGCTGCCTTCGGCGACAGCTCCTCTCCTCACAC
CGGGTCGGCTTCGCCTCGCTCGACCAAGGCCCCACTGTTCCCGCTGGCCG
ACTTCGCGGAGGCGTACTCCGGCCTGCGCGTTCGGAACCGCTTGCTCTCA
GCAGAGGTGGGTGTGTGTTTCTGGTCTTTCTTTTTCCTGCTCAGGTGACG
AGGGACTGCTGTGTGCGCAGCAACCCATGCGCTCGAGGAGAGGTATCTGT
TTGTTCGCCGATGTGTGTGTGTATAATGCTATTGTAAGGTGTGTTGGGTG
GGTGCACTTCCATGACTCGATCACATTGTCGCATTTCAAGTCTTCCTATC
ATACAGCTCGAGCTCTGATGTGTGTCTGTGTCGGGCAACGGCAAAAAAAA
TGTATATTTTATATTTTTGAACCCATGTGCCCGTGTGCCCCATGTTCTTC
CAAAATCATATACAGTACTTGCATACAAGTGCAGAACTTGTATATGCGTA
ACGCGTAACGCGGTTTCCGTAAAAATATCTTGATTTCAAAGACAGCAAGT
ACTTGTACTGTAGTAAAGCGAGCGTTGGGGTCCCACCTTTTGTACAAAGG
AAGGTGATCCAAGCTACACCTATGAAGGCTTGCGTTGCGTATTATGCTTA
ATATATATAATAACGAAGACACGAACTTGTACTAAGTATGATGTTATAGA
GTTATGGTACAAGTGTCTTCTTTGTCCTGAGCACACACACCCCTGCACCC
CCCCGCACTGCCCTTCAATCGACCCCAGGACATGCGTCTGCGCATGAAGG
GCCGCAAGGTGCACCGGCTGGCAGAGCTAAGATCCGCGCCGACGCAGGCG
CTCGAGAGCCAGGACCCGTCCGACGCCTGGGCGGCCGTCGGGGTGCTGGT
CTCGAAGTCCCCCCGGAGGCAGGCGGCGAACGGGGGAAGCTACGCCATCT
GGACTCTGAGCGATCTGTCGAGGAAAGAGAACGACATATCGGTGTTCTTG
TTTCAGGAGGCGCTCGGGTCCCACTGGACTGTCTGCGAGGGGACGCTCTT
GGCCGTACTCAGCGCCAAGGTTTTGCCGCCCAAGGGGGCCGGCGGGGGCG
GGGGCGGGGGTGGAGATCAGCGGCTAGCGTTCTCGGTGGACTCTCCGTGG
CAGGTACTGTAGAGACATACAAGTAGCTCTGTACGACGATGTGCCCCTGT
AGCGTGGGATCGATCGGTGAACGATGCAGCAAGCACCCCGGCCGGGTGCA
AGCGCTGGGTGCGATATGTATAGGCTTAGGACTTCGAGAGGCGGGAAGGG
CGCGCGCAGAGGACGTACGAGTAGCGGTCGGTGCAGCGGTTGTTGTATTT
TAGCAGCAGGCGGATGGTGTTTTTTTTTCGATTAAGATCGTGGTTTGTTC
GTCTGCGATTTGGGTGGGAGCGTTTGAACATATTGCTGTGCTATTATCTT
ATTAATAGGACAGTATTATATCATTTCTTGCATTTGTTCCCCCCGTCCCG
GTTTCGTTAACATGTTGGTTTGGGTACTGCGAGGAGTCTCTGTTTTTCTA
CCGCGAGATTTTTGCACCCACGGATGCGTTACTGCGGCGCGCGCATGCAC
ACGGGCTTCTGGTGCCGAGCTCTACCCTCTTCCTCACAACCCGTCTCTGT
GAAATATATATACGAAGTATACGATTTAAGCCTCCTGATTGAATTCTCTT
CAGCTTTAGTGAGCACGAACGGCGACTCCTGAGAAGGGTACAAGTATGCA
CATACAGAAGTCGAGCATCTGACTGGTCGCTGCTATTAATAGATTTGACA
ACCACACGCGCCCGAACAGGTCAGCAGAGTCGGCATGGCGATGGACTACG
CCCTCTGCAAGGGCAAGCGAAAGGACGGCAAGCCGTGCACGATGCCGGTC
AACAAGACCGAGGGGGGCGGCTTCTGCGAGTTCCACGTCGTCGCGGCCTT
CAACCGTGCCCAGCGCCAAGATCCACTGCGAGCCAAAGCCAAGGGGAACG
GCAACGGCACCGGCACTAGCGGCGGGAATAATAACTTTCGCGCGATGATG
CAAGGGAAGAACGCCGCGCCAGGTGTGTGTGGGCGAGGGCCGGGTGCGGC
GGCAAGACCGCCCTTTCAAGGCTTGGAGACCGTTCAGTCAGGGCTGCAGC
AAAATGCTATTATTATAATACATGCAGCAGTGACCGTGTTGGGGTCTGTG
CCGGTCGATCCTGCGTGCGTGTCTCTCGTTCTTGTCTACTCGAAAACCCG
TCTGTCTCGTCTTATGTGCTTCTGCTGTTGTCTGTATCACAAGCTCTGTT
GATGTTTTGGTTTCTCGCTTTCTTTCTCTTTATCTGACCATGAGCGGGAT
CTGTGACCATTGTCGGGCCGGTCGGTTGTGGCAATATATACTTTGAGTAT
ATATACTTCGAAGTATATATATATATATATTTATGCATAAAAAAACGGCC
AAGCTCGTCAGGACGCCTAATTAAATACCAAGAAGGGGCTGCCTGTATTG
TAATTAGACCTCCACCTTTCTTTTTGCCTCATTTATCCTTTCCCTAATTT
TCCTTTTCAGGACGACAGCACCAAAACCCCATCCTTGGCCGAGCTACCTC
CACACCCGCCTCCACCCGCACGGGCCCGGCTTCCTGCATGGCGACGCCGC
GGCGCGCACCCACCATCAGCCTATCGGGCATCATGGGGGACGGAGCAAGG
CGCCGAGAGGATATCGGGGCGGCGCGCTTCGGCGGCAGCGGCGGGGCAAA
TCTCCGACCTCCGACCAAGGACGCCAAGCCGCTACGCCCCTCGGCCACGA
GAGCCGCCGGCCGTACGACGATGCTCTCCGCTTTATCCGCCGCCTGCGGC
GGCGCGAGCGCATCCCGGCCTTCTTCTGGCCTTCGGGAAAACCGACCAAG
AGGCTCGGGCGCGACTGCGACGCCGACTTCGTCGACCCCTAGCGCGTCAG
GGAACGCGAGAGCGAGCGCGGGCCGAGGCAACGGGGGCGGTTCTAGTTCA
AATTCTGGCGGTGGGGCATCCGAGGATCTCATGGGATTGCCGTGGGCCTA
CGGGAACACCGAGGCGTCCGGCCAGGGTGCCGCCACAAAAATCCCGAAAC
GTAGGACGGGAAACGGGGAAGGGTCTGGCGGCGGCGGCGGCGGCGGCGGG
ACGGGGCACGGGAAAAATAAGAGGAGGAGGGACTGCCCGCCGGCGGCGGG
CGGAGAGGGGGGCGGCGCCGACGACGGCGAGAGGAAGGCTGCACTCGCCG
CGAGGCCGCCGGCGGAGGCGCACCCGGCGGGTTACATGGACGGAACGGTC
GTTGTGCCCGCGCCGTCCAGCGTGTTTTTGACCATGGGGCAGAGGTGCGG
AGTGCGTGGCGACGGGACCAGGACGCACGACGGAGAGAAGAAGCTCGACG
AGGTCAAGGTACGTTGGCGTGAGGGAGTATGATACCGGCCCCGTGTTGGT
TTGTGTATGGATGTACATACGTGGTTCGGCGGTTGACCCTCGGGCAAGCT
AGCTTCTGGGGGGTGCAAGATGGTTTTCGCGATTTAAGCACGGTCTGCAC
AAGTATCTACATCTGTGTGCGCGTATCGAAGACAGCTAGTTTGTGGCGTT
CGAGCGTTTCGTGGGACGCCCGTTCCGCACGGCCGTTCTCTTGATGTTTG
TCGGTGTTTTTTTTTTGTATCCCGTGATCTCGATTTGCTTCGACATTTCA
GCAAGAAGCCTGTACATGTGCGTGGAGGAGCCTAATCCTCTCATGTCCTT
CAAGTTGCTTCACTCTATCATCACAACAGTCGACCAGTGTGTCGTCTGCG
CCGCGGCCGGGCCAAACGTTACCCGGAAGGGCTCCGTTCATGGAGCGTTT
TCCACACGCGTGGCGGCAGCTCGAACCTCGTCCGCGAGAAAACGGGTGCG
CTTCGCATCCCTGGCAGCGAACATGGACGACTGTTCGGGTTGAACAGACC
GACCACACATGCGTTTTTTTTGCGGACTATGACGGAACAGAACAACGAGA
ATCAAAGGCGCATCTTTTTCACGCACCTCCCATTCCTTTCCCATTTTCCT
AGTGTGTTAGCTCTGGTGTAAACCGATTTTGCCAGGTCGCTGTAGAGCAC
AGATTGAGACGGGACCTTCGGCAATGACCTCTCCTTGGTCCACTTTAGAG
ATTTCGAGTGTGCAGAATTCTACGTTTGCCACAAGAAAATGAGGTCGGTT
TTGGCAAGGGAAAAACGTGGTAGTGTGCTTCCACACCTAGATTTTGAATT
TGTTGTTTTGATTCCAGAATTCGAAAAATGGGCAAAAAAACAAATGTGAC
CATGAACAAGCGCATTGACCAACAAACCACGCGGTGCCAAAACATTGAGA
ATACCCCCCCCTCAAGAAGGGCAATCACTCCGTCCGTGGTTTACTACTGT
GTCCGTGTGATCAACTTTCGAACAACTCAAAACGTAGCGTGAACCCCCCC
CCCCCCACACACACACCCTGGCGCCCTCGCGTTATCTGGCTTTTCGCCCC
AAAACAAAACTCTCGACGCTTCCCGCAGATGCTGATGAATCAACGGATCA
TCAAGCAGAAGGCCGACGCCCAAGGTATAATTCTCCGGCCGCAGGACCCC
AACGCTTCCGTCGGCGGCAGCACGAACAGGCCCTCCATCCTCGGCGCCGG
GAAGAAGAACGCAAGGCCCGGAGCGGCAAGCGCCGACGCTCTGCTGGGCG
CGCGCGGGGGGGCTGGCGGCAAAGTTAGCGACCCTTTCGCCAAGAAGGTC
AAGGTGAGATTGGAGATTGGCCGCGGCCGCGGAGTGAGTTTTGTAGAGAG
GGGGAAACTAGGGGCGGCTGCAAATACCACCGCGCGGTAAGGGAGGCAGT
GCTAGGAAGCTGAAGCTTGCCTAAACACGCAGAAAAGGCGACACTATAAA
ATTTGTACTTTCTGAAAGAGAAGCAAGCTCTCAGATTTGAATGCTACAAC
GGGGGTCGTGCTGGGCGCTGGGCATCACTTTCTGTTATAAAATCCCAACG
AACCGCCCTGAGGAAGAAAGTAATTTCGAGGCACGGATACGAGCGTTGAG
GTCCATCTCTTCCCTTCCACCCCCCCCCCGAGGTCTATGGTCTAACAACT
ATGGCAAGCACGATCAAGGAGTACCCCCCCCCCCCCCCCCCCTTGAAACA
CTGTATTTATTGGATGATACACTGTATTGAACAGTGCTCAAAACCTCTTC
TGGTATGAAGGAGGGATCCTAGCAAGCACAACATGGTGACCCCCCCCCCG
CTCCCCCACTTGTTATTTCCTCTTGTCCTTTTCCTCCAGACTATGAGCGC
TGTCGAGAAGGAGGTGCTCTTGCGACGGGTGTCCAAGTATGCCGGGCTGG
CCGAGGAGGTAAGTACTCGCCACCGTTACGTGTAGAGACGAGCGGCGCCT
GACGTGACTGTTGGAAACCGCGCATGACCGCCTTACGGGGCATGTTTTGC
TTCGTCGCCCGTGTTCCTCGAGGCTAAGCTAACGCACGGGCGTGCCCCGT
GTGCGTTCAGCAGCAGTTCCGTACGGGCTTCACGACCCTCCTCTTCCTCG
ATTCATCCCACCCACCTTGCAATGTGTTTCCTCTTATCTAATTGGCGTAT
GCATTCGTTTATCTCTGGATTTTTTTACCTTTTCCTCGCATAAACGATTA
TCTCGGTGTTCGACAACGTTAAACCTTGACTACACGCAAACTACTGTCGA
CTGTGAACTTCCAGTGAGCGGCGTCGGGTCCAGCCCCAGCGGGCCAGAGT
CGCCCAGCCCGGGAGGTGGTTTCAGCGAAGTTTTCAACCCCGGCAGCGCA
CTCGGCACTGCCTTGACCGATGTGTGCGATGGATAGGGGGGAGGGGGGAG
GACGTCCTCATGTTTCCATACCTTAGTTGATAGAGACCACCCATTAATTA
ACCACGCGATCTCGGGAGGACGGAGCACTGTTCCTACAGGGTCGATCGAG
CTGATGGCCGATCCTTCCTTCCCGCATTGCCAAAAAGGTGGCGCGAAACC
CTGTTTTTCCTATGCTGTGCTCTCTTCTTCGTCCTCGATGCTCGTCTTTT
CGAACCACTTCGTATCTCCCACCATTGCTACTTGCACTGCCTTCGTGTCG
TTGTCGCATGCTTCAAAATCGTACGTCTATCATAACCTTCAATTTTCCAG
GGACCTTTACAATGCCTGGCGCTTGCGCATGTCATTTGACGGTATGAATA
CCACTGCCAGAACCGGTTTTCGGTTCGGCACTGCCAGATTTTCATTCATA
AAAACCGGCCCTGGTTCGGCTCTGTCATAATTTTTACTGTTCTAACAGGC
ACTTGATCTGATATCCTTATTAATTAATACAAGAGTGAACGTATTGTTGA
ATTTGTTCATAGTGGTTTAGTGTGGACCGCAAATACGACTTGAGGCCTAC
GCCGATGATTTGTCATAGAGTGATTTTAGTTGGGCCCACAGCAGTACACT
GAGGCCGGCCCGATTTGGTATACTAAATCCGATACGATTTACATTTTCAA
ATGCAACACGATACGCCTGCCGTGGGTCGCGACACACCGTATCCTCCAAA
CCTAACCCGCACATACGTCCTGCCAACGCACACCTCACGGGCGACAGGCG
TGGCTTGCAACTAGTATATGTGTAATTCTAGAGGGCCCGTGTGATTCCCA
TGCAGGGCATGTGAAAAGATAGGTGTATACATTGTAATCTTACAGCAGTG
CCTGTTTTCGGTTTGGCACTGTTGTTGATATATTTTTTGTTAAAAACCGG
CACTGGTTCGGCACTACTATTAGTATGTGATCTTCAGCCGGTACTGGTCC
GGCTCGGTACTGTCCGATTTTCGCGGGCATGTGAATGCCCGTGAATTTTT
CCCGGTTCAGTTGAGTCGTACAGTATACCCTTCTATCTCCGTATGCGAAG
AGAGGGGGGGGTTGGGGCGTGTGGAAAATGACGAGCCCCCAAAAAATGTG
ATGAATTCAAAAACGTAGAGCGAGCGTTGGGGTCCCACCTTTTCAAGAAG
GAAGATGGTTCAAGCTATGATACTATGATATTAATACCTGTTCACCTATG
GAGGCTCACTAGTTACGTATGATGCTCTAAGGTGCCATGTCATGTGTATA
TTATGTTATAGTGGTTATGGTGCAAGTGTCTTTGTCCCGAGCGATATCCT
GGTAATGTATATTGCGATATCCTGGTAATGTATAGTGTCTTTGTCCCGAG
CGATATCCTGGTACTGTATATTGTTGATGTGCTGCTAATGACGAACCCCC
CCCCCCCCCGGGGCGGCGTCGCGTTCTCGCTTTCGCTCCCGAACAGGAGC
GCGCGAAGGACGCGGACCGAAGCATGCAGCGCCTGGAGAACCGCGAGGCG
ATGGCGGACAAGGCGGAAGAAGTCACGAAGATGGCGGTGACGGTGTACCA
CTGCAAAGAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8174:223..7782-

>mRNA_S-dermatodea_contig8174.16371.1 ID=mRNA_S-dermatodea_contig8174.16371.1|Name=mRNA_S-dermatodea_contig8174.16371.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4368bp|location=Sequence derived from alignment at S-dermatodea_contig8174:223..7782- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGGACATCGCGGAGGAGGACATCGACCTGCTGGATTTCTTCTCTGC
CAGCGAGGTCCGCTCGTCGTCGCCGACCAATGCGTTGCCCAAGGCACAGC
AGGCAACTCCCGTTACTGGGAACACGAAGAGGGTAAGCCAAGAGCAAGCA
GCGTCGTCCAAGCCTAGGGCTGCCTTCGGCGACAGCTCCTCTCCTCACAC
CGGGTCGGCTTCGCCTCGCTCGACCAAGGCCCCACTGTTCCCGCTGGCCG
ACTTCGCGGAGGCGTACTCCGGCCTGCGCGTTCGGAACCGCTTGCTCTCA
GCAGAGATGGGGGACATCGCGGAGGAGGACATCGACCTGCTGGATTTCTT
CTCTGCCAGCGAGGTCCGCTCGTCGTCGCCGACCAATGCGTTGCCCAAGG
CACAGCAGGCAACTCCCGTTACTGGGAACACGAAGAGGGTAAGCCAAGAG
CAAGCAGCGTCGTCCAAGCCTAGGGCTGCCTTCGGCGACAGCTCCTCTCC
TCACACCGGGTCGGCTTCGCCTCGCTCGACCAAGGCCCCACTGTTCCCGC
TGGCCGACTTCGCGGAGGCGTACTCCGGCCTGCGCGTTCGGAACCGCTTG
CTCTCAGCAGAGGACATGCGTCTGCGCATGAAGGGCCGCAAGGTGCACCG
GCTGGCAGAGCTAAGATCCGCGCCGACGCAGGCGCTCGAGAGCCAGGACC
CGTCCGACGCCTGGGCGGCCGTCGGGGTGCTGGTCTCGAAGTCCCCCCGG
AGGCAGGCGGCGAACGGGGGAAGCTACGCCATCTGGACTCTGAGCGATCT
GTCGAGGAAAGAGAACGACATATCGGTGTTCTTGTTTCAGGAGGCGCTCG
GGTCCCACTGGACTGTCTGCGAGGGGACGCTCTTGGCCGTACTCAGCGCC
AAGGTTTTGCCGCCCAAGGGGGCCGGCGGGGGCGGGGGCGGGGGTGGAGA
TCAGCGGCTAGCGTTCTCGGTGGACTCTCCGTGGCAGGACATGCGTCTGC
GCATGAAGGGCCGCAAGGTGCACCGGCTGGCAGAGCTAAGATCCGCGCCG
ACGCAGGCGCTCGAGAGCCAGGACCCGTCCGACGCCTGGGCGGCCGTCGG
GGTGCTGGTCTCGAAGTCCCCCCGGAGGCAGGCGGCGAACGGGGGAAGCT
ACGCCATCTGGACTCTGAGCGATCTGTCGAGGAAAGAGAACGACATATCG
GTGTTCTTGTTTCAGGAGGCGCTCGGGTCCCACTGGACTGTCTGCGAGGG
GACGCTCTTGGCCGTACTCAGCGCCAAGGTTTTGCCGCCCAAGGGGGCCG
GCGGGGGCGGGGGCGGGGGTGGAGATCAGCGGCTAGCGTTCTCGGTGGAC
TCTCCGTGGCAGGTCAGCAGAGTCGGCATGGCGATGGACTACGCCCTCTG
CAAGGGCAAGCGAAAGGACGGCAAGCCGTGCACGATGCCGGTCAACAAGA
CCGAGGGGGGCGGCTTCTGCGAGTTCCACGTCGTCGCGGCCTTCAACCGT
GCCCAGCGCCAAGATCCACTGCGAGCCAAAGCCAAGGGGAACGGCAACGG
CACCGGCACTAGCGGCGGGAATAATAACTTTCGCGCGATGATGCAAGGGA
AGAACGCCGCGCCAGGTGTCAGCAGAGTCGGCATGGCGATGGACTACGCC
CTCTGCAAGGGCAAGCGAAAGGACGGCAAGCCGTGCACGATGCCGGTCAA
CAAGACCGAGGGGGGCGGCTTCTGCGAGTTCCACGTCGTCGCGGCCTTCA
ACCGTGCCCAGCGCCAAGATCCACTGCGAGCCAAAGCCAAGGGGAACGGC
AACGGCACCGGCACTAGCGGCGGGAATAATAACTTTCGCGCGATGATGCA
AGGGAAGAACGCCGCGCCAGGTCACCAAAACCCCATCCTTGGCCGAGCTA
CCTCCACACCCGCCTCCACCCGCACGGGCCCGGCTTCCTGCATGGCGACG
CCGCGGCGCGCACCCACCATCAGCCTATCGGGCATCATGGGGGACGGAGC
AAGGCGCCGAGAGGATATCGGGGCGGCGCGCTTCGGCGGCAGCGGCGGGG
CAAATCTCCGACCTCCGACCAAGGACGCCAAGCCGCTACGCCCCTCGGCC
ACGAGAGCCGCCGGCCGTACGACGATGCTCTCCGCTTTATCCGCCGCCTG
CGGCGGCGCGAGCGCATCCCGGCCTTCTTCTGGCCTTCGGGAAAACCGAC
CAAGAGGCTCGGGCGCGACTGCGACGCCGACTTCGTCGACCCCTAGCGCG
TCAGGGAACGCGAGAGCGAGCGCGGGCCGAGGCAACGGGGGCGGTTCTAG
TTCAAATTCTGGCGGTGGGGCATCCGAGGATCTCATGGGATTGCCGTGGG
CCTACGGGAACACCGAGGCGTCCGGCCAGGGTGCCGCCACAAAAATCCCG
AAACGTAGGACGGGAAACGGGGAAGGGTCTGGCGGCGGCGGCGGCGGCGG
CGGGACGGGGCACGGGAAAAATAAGAGGAGGAGGGACTGCCCGCCGGCGG
CGGGCGGAGAGGGGGGCGGCGCCGACGACGGCGAGAGGAAGGCTGCACTC
GCCGCGAGGCCGCCGGCGGAGGCGCACCCGGCGGGTTACATGGACGGAAC
GGTCGTTGTGCCCGCGCCGTCCAGCGTGTTTTTGACCATGGGGCAGAGGT
GCGGAGTGCGTGGCGACGGGACCAGGACGCACGACGGAGAGAAGAAGCTC
GACGAGGTCAAGCACCAAAACCCCATCCTTGGCCGAGCTACCTCCACACC
CGCCTCCACCCGCACGGGCCCGGCTTCCTGCATGGCGACGCCGCGGCGCG
CACCCACCATCAGCCTATCGGGCATCATGGGGGACGGAGCAAGGCGCCGA
GAGGATATCGGGGCGGCGCGCTTCGGCGGCAGCGGCGGGGCAAATCTCCG
ACCTCCGACCAAGGACGCCAAGCCGCTACGCCCCTCGGCCACGAGAGCCG
CCGGCCGTACGACGATGCTCTCCGCTTTATCCGCCGCCTGCGGCGGCGCG
AGCGCATCCCGGCCTTCTTCTGGCCTTCGGGAAAACCGACCAAGAGGCTC
GGGCGCGACTGCGACGCCGACTTCGTCGACCCCTAGCGCGTCAGGGAACG
CGAGAGCGAGCGCGGGCCGAGGCAACGGGGGCGGTTCTAGTTCAAATTCT
GGCGGTGGGGCATCCGAGGATCTCATGGGATTGCCGTGGGCCTACGGGAA
CACCGAGGCGTCCGGCCAGGGTGCCGCCACAAAAATCCCGAAACGTAGGA
CGGGAAACGGGGAAGGGTCTGGCGGCGGCGGCGGCGGCGGCGGGACGGGG
CACGGGAAAAATAAGAGGAGGAGGGACTGCCCGCCGGCGGCGGGCGGAGA
GGGGGGCGGCGCCGACGACGGCGAGAGGAAGGCTGCACTCGCCGCGAGGC
CGCCGGCGGAGGCGCACCCGGCGGGTTACATGGACGGAACGGTCGTTGTG
CCCGCGCCGTCCAGCGTGTTTTTGACCATGGGGCAGAGGTGCGGAGTGCG
TGGCGACGGGACCAGGACGCACGACGGAGAGAAGAAGCTCGACGAGGTCA
AGATGCTGATGAATCAACGGATCATCAAGCAGAAGGCCGACGCCCAAGGT
ATAATTCTCCGGCCGCAGGACCCCAACGCTTCCGTCGGCGGCAGCACGAA
CAGGCCCTCCATCCTCGGCGCCGGGAAGAAGAACGCAAGGCCCGGAGCGG
CAAGCGCCGACGCTCTGCTGGGCGCGCGCGGGGGGGCTGGCGGCAAAGTT
AGCGACCCTTTCGCCAAGAAGGTCAAGATGCTGATGAATCAACGGATCAT
CAAGCAGAAGGCCGACGCCCAAGGTATAATTCTCCGGCCGCAGGACCCCA
ACGCTTCCGTCGGCGGCAGCACGAACAGGCCCTCCATCCTCGGCGCCGGG
AAGAAGAACGCAAGGCCCGGAGCGGCAAGCGCCGACGCTCTGCTGGGCGC
GCGCGGGGGGGCTGGCGGCAAAGTTAGCGACCCTTTCGCCAAGAAGGTCA
AGACTATGAGCGCTGTCGAGAAGGAGGTGCTCTTGCGACGGGTGTCCAAG
TATGCCGGGCTGGCCGAGGAGACTATGAGCGCTGTCGAGAAGGAGGTGCT
CTTGCGACGGGTGTCCAAGTATGCCGGGCTGGCCGAGGAGGAGCGCGCGA
AGGACGCGGACCGAAGCATGCAGCGCCTGGAGAACCGCGAGGCGATGGCG
GACAAGGCGGAAGAAGTCACGAAGATGGCGGTGACGGTGTACCACTGCAA
AGAGGAGCGCGCGAAGGACGCGGACCGAAGCATGCAGCGCCTGGAGAACC
GCGAGGCGATGGCGGACAAGGCGGAAGAAGTCACGAAGATGGCGGTGACG
GTGTACCACTGCAAAGAG
back to top