mRNA_S-dermatodea_contig8171.16367.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8171.16367.1
Unique NamemRNA_S-dermatodea_contig8171.16367.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8171.16367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8171contigS-dermatodea_contig8171:3200..3509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size310
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925326.1385489-CDS-S-dermatodea_contig8171:3199..35081622925326.1385489-CDS-S-dermatodea_contig8171:3199..3508Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8171 3200..3508 +
1694079857.1467383-CDS-S-dermatodea_contig8171:3199..35081694079857.1467383-CDS-S-dermatodea_contig8171:3199..3508Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8171 3200..3508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8171.16367.1prot_S-dermatodea_contig8171.16367.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8171 3200..3508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8171.16367.1

>prot_S-dermatodea_contig8171.16367.1 ID=prot_S-dermatodea_contig8171.16367.1|Name=mRNA_S-dermatodea_contig8171.16367.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=103bp
PPSTSSPPCCFISYRLTIFTELLLAGHTQQQIKNEQIRLSQRNSKNLRGW
GWGAGAGVLFRDPASHARKEKKRKRHKPSSPYICATITISSKNTKLKSHK
YTL
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mRNA from alignment at S-dermatodea_contig8171:3200..3509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8171.16367.1 ID=mRNA_S-dermatodea_contig8171.16367.1|Name=mRNA_S-dermatodea_contig8171.16367.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=310bp|location=Sequence derived from alignment at S-dermatodea_contig8171:3200..3509+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCCATCCACCTCGAGTCCGCCGTGTTGTTTCATTTCATATCGCCTAAC
TATATTTACTGAATTGCTGCTTGCTGGACACACGCAGCAACAAATAAAAA
ACGAGCAAATCCGCCTTTCGCAGAGGAACTCTAAGAATCTTAGGGGTTGG
GGGTGGGGGGCGGGGGCGGGAGTCCTTTTCCGCGATCCAGCATCCCACGC
GCGAAAAGAAAAGAAAAGAAAAAGGCACAAGCCCTCATCTCCCTACATAT
GCGCCACCATTACTATATCGAGCAAAAACACCAAATTAAAGTCACACAAG
TACACCCTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8171:3200..3509+

>mRNA_S-dermatodea_contig8171.16367.1 ID=mRNA_S-dermatodea_contig8171.16367.1|Name=mRNA_S-dermatodea_contig8171.16367.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at S-dermatodea_contig8171:3200..3509+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCCATCCACCTCGAGTCCGCCGTGTTGTTTCATTTCATATCGCCTAAC
TATATTTACTGAATTGCTGCTTGCTGGACACACGCAGCAACAAATAAAAA
ACGAGCAAATCCGCCTTTCGCAGAGGAACTCTAAGAATCTTAGGGGTTGG
GGGTGGGGGGCGGGGGCGGGAGTCCTTTTCCGCGATCCAGCATCCCACGC
GCGAAAAGAAAAGAAAAGAAAAAGGCACAAGCCCTCATCTCCCTACATAT
GCGCCACCATTACTATATCGAGCAAAAACACCAAATTAAAGTCACACAAG
TACACCCTCCCCCCATCCACCTCGAGTCCGCCGTGTTGTTTCATTTCATA
TCGCCTAACTATATTTACTGAATTGCTGCTTGCTGGACACACGCAGCAAC
AAATAAAAAACGAGCAAATCCGCCTTTCGCAGAGGAACTCTAAGAATCTT
AGGGGTTGGGGGTGGGGGGCGGGGGCGGGAGTCCTTTTCCGCGATCCAGC
ATCCCACGCGCGAAAAGAAAAGAAAAGAAAAAGGCACAAGCCCTCATCTC
CCTACATATGCGCCACCATTACTATATCGAGCAAAAACACCAAATTAAAG
TCACACAAGTACACCCTC
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