mRNA_S-dermatodea_contig81683.16365.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81683.16365.1
Unique NamemRNA_S-dermatodea_contig81683.16365.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: A0A8F0FD12_9PHAE (NADH dehydrogenase subunit 2 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FD12_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 2.530e-98
Identity = 158/229 (69.00%), Postives = 185/229 (80.79%), Query Frame = 1
Query:    1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLNPAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFVAIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSK 687
            K+GAAPYH WVADVYEG P+LVSLIFA+VPKL I IV+ R+A VSS SFF  LW+ LF F  +LS   GC GGL EIKIKR+FAFSGI H+GF+C+S SC S+E  Q+MFFYL+IY++T VFM  +VLCLN ++KKWLSLV+ VGI QSNPIF L+IC M FSLAGIPPFGGFF+KVFVFIALI   SF+ V  AI+TSV+SAFYYLRIIKI+FFE S  W +FN L K
Sbjct:  270 KIGAAPYHFWVADVYEGVPSLVSLIFAAVPKLVIFIVLSRLAFVSSWSFFFILWKTLFVFCGLLSFFFGCFGGLGEIKIKRIFAFSGIGHIGFICVSFSCGSLEGAQSMFFYLLIYMVTAVFMWTFVLCLNSSKKKWLSLVNCVGIVQSNPIFGLIICLMCFSLAGIPPFGGFFAKVFVFIALIAKSSFHIVIFAILTSVISAFYYLRIIKILFFEGSHLWFFFNPLYK 498          
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: A0A4Y5T7S4_9PHAE (NADH dehydrogenase subunit 2 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7S4_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 7.910e-85
Identity = 133/230 (57.83%), Postives = 175/230 (76.09%), Query Frame = 1
Query:    1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLNPAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFVAIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSKN 690
            KLGAAPYH+WVADVYEGAPT+++L+FASVPK AI + + R+  +SS S F  +W  LFF   +LSL  GCLGGL EIK+KR+ A+SGI H+GFLCL   C S+  +Q++FFYL  Y LT+++M  Y+L L P++K WLS+VD+VG+ QSNPI  ++ C M FSLAGIPPFGGFFSK+ VF +L+D   +     A+ TS LSAFYYLR+IKI++FEK +TW++F  LSK+
Sbjct:  231 KLGAAPYHMWVADVYEGAPTIITLLFASVPKFAIFVAMLRLIFISSWSLFPVVWESLFFSCGLLSLFFGCLGGLGEIKLKRVLAYSGIGHIGFLCLGTGCGSLMGVQSIFFYLFFYTLTSLYMWTYLLHLYPSKKNWLSIVDSVGLVQSNPILGIMTCLMLFSLAGIPPFGGFFSKMLVFASLVDGYFYSLALFAVFTSALSAFYYLRLIKILYFEKPKTWVFFCALSKS 460          
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: Q2TUB1_DICDH (NADH dehydrogenase subunit 2 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUB1_DICDH)

HSP 1 Score: 269 bits (688), Expect = 7.910e-85
Identity = 135/230 (58.70%), Postives = 173/230 (75.22%), Query Frame = 1
Query:    1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLNPAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFVAIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSKN 690
            KLG+APYH+WV DVYEGAPT+VSL+FA+VPKLAI IV+ R+  + S S FS +W   FF   +LSL  GCLGGL EIK KR+  +S + H+GFLCL + C S+E  QA+FFYL IY  T++++  Y++ L P  K WLSLVD+VGI QSNP   LL C M FSLAGIPPFGGFF+K+ VF+AL+D   +    VA+ITS ++AFYYLRIIKI++FEKS TW +F+ +SK+
Sbjct:  231 KLGSAPYHMWVIDVYEGAPTIVSLLFAAVPKLAIFIVLLRLVFLGSWSLFSSVWENFFFICGLLSLFFGCLGGLGEIKFKRVLGYSAVGHIGFLCLGVGCGSVEGSQAVFFYLFIYTFTSIYVWAYLMHLGPISKNWLSLVDSVGIVQSNPTLGLLTCLMFFSLAGIPPFGGFFAKMVVFVALVDGYFYIVCVVAVITSSIAAFYYLRIIKILYFEKSNTWAFFDTISKS 460          
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: Q2TUE9_9PHAE (NADH dehydrogenase subunit 2 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUE9_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 1.520e-72
Identity = 130/233 (55.79%), Postives = 169/233 (72.53%), Query Frame = 1
Query:    1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLN---PAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFV-AIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSK 687
            KLGAAPYH+W+ADVYEG+PTLVS IFA VPK +I +VI R+   S  SFF  LW   F    +LSL +GCL GL E KIKRL AFS + HVGFLCL L+  SIE LQA+ FYL+IY+LT  F+  YVL L+    + K  ++  D +G+A+SNP+  L++  M FSLAGIPP GGFF+K+ +FI+L+D  SFY + V  ++TSV+SAFYY+R+IKI +FEK++ W +F  LSK
Sbjct:  229 KLGAAPYHMWIADVYEGSPTLVSFIFAVVPKFSIFVVISRLIFTSFWSFFPSLWEDFFCICGLLSLSIGCLCGLGETKIKRLLAFSSVGHVGFLCLGLASGSIEGLQAVLFYLLIYMLTAAFLWIYVLHLDIDSTSNKSLVTFADAIGLARSNPLLGLVVVLMIFSLAGIPPLGGFFAKLNIFISLVDA-SFYLIAVFTVLTSVISAFYYIRLIKIFYFEKNENWFFFAPLSK 460          
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: Q2TUJ1_FUCVE (NADH dehydrogenase subunit 2 n=3 Tax=Fucus TaxID=3011 RepID=Q2TUJ1_FUCVE)

HSP 1 Score: 235 bits (600), Expect = 1.200e-71
Identity = 126/233 (54.08%), Postives = 168/233 (72.10%), Query Frame = 1
Query:    1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLN---PAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFV-AIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSK 687
            KLGAAPYH+W+ADVYEG+PT+VSLIFA VPK+A+ IVI R++ +S  SFF   W   F    +LSL +GCL GL E KIKRL AFS + HVGFLC+ L+  SIE +Q + FYL +Y+LT  F+  YVL L         +L+  D++G+ +SNP+F L +  M FSLAG+PP GGFF+K+ +FI+L+D  SFY V + A++TSV+SAFYY+R+IKI +FEK+  W YF  +SK
Sbjct:  229 KLGAAPYHMWIADVYEGSPTIVSLIFAVVPKIAVFIVILRLSFLSFWSFFPVFWEDFFCLCGLLSLFIGCLCGLGETKIKRLLAFSSVGHVGFLCIGLASGSIEGVQGVLFYLFMYMLTAAFLWIYVLHLELGLTTTTSFLTFADSIGLVRSNPVFGLGVVLMIFSLAGVPPLGGFFAKLNIFISLVDA-SFYLVAIFAVLTSVISAFYYIRLIKIFYFEKNDNWFYFAPISK 460          
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: A0A3G5FPS0_9PHAE (NADH dehydrogenase subunit 2 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPS0_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 3.200e-71
Identity = 131/232 (56.47%), Postives = 165/232 (71.12%), Query Frame = 1
Query:    1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLN-PAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFY--AVFVAIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSK 687
            KLGAAPYH+W+ADVYEGAPT VSLIFA VPK+A  +V+ R+A  S  S F   W   F    +LSL +GC+ GL E KIKRL AFS I HVGFLCL L+  S+E LQA+ FYL+IY+LT  F+  YVL L+  +    L+  D +G+ +SNP     +  M FSLAGIPPFGGFF+K+ +FI L+D  SFY  AVF A+ITSV+SAFYY+R+IKI +FEK+Q W +F  L+K
Sbjct:  229 KLGAAPYHMWIADVYEGAPTFVSLIFAVVPKVAFFVVVLRLAFTSFWSLFPMFWEDFFCLCGLLSLFIGCICGLGETKIKRLLAFSSIGHVGFLCLGLASGSLEGLQAVLFYLVIYMLTASFLWVYVLHLDLTSTSSLLTFADAIGLVRSNPFLGFGVVLMIFSLAGIPPFGGFFAKLNIFIGLVDS-SFYILAVF-AVITSVISAFYYIRLIKIFYFEKNQNWFFFAPLTK 458          
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: E6ZES5_ECTSI (NADH dehydrogenase subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZES5_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 3.200e-71
Identity = 126/230 (54.78%), Postives = 160/230 (69.57%), Query Frame = 1
Query:    1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLN-PAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFVAIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSK 687
            KLGAAPYH+W+ADVYEGAPTLVSLIFA VPK+A  +V+ RIA  S  S F  LW   F    +LSL +GCL GL E KIKR+ AFS + HVGFLCL L+  SIE +QA+ FYL+ Y+LT  F+  YVL L+  +    L+  D +G+ +SNP     +  M FSLAGIPPFGGFF+K+ +FI LID   F     A++TSV+SAFYY+R+IKI +FEK+  W +F  L+K
Sbjct:  229 KLGAAPYHMWIADVYEGAPTLVSLIFALVPKVAFFVVVLRIAFTSFWSLFPTLWEDFFCICGLLSLFIGCLCGLGETKIKRILAFSSVGHVGFLCLGLASGSIEGIQAVLFYLVFYMLTASFLWVYVLHLDLTSNSSLLTFADAIGLIRSNPFLGFGVVLMIFSLAGIPPFGGFFAKLNIFIGLIDSSFFIVAVFAVLTSVISAFYYIRLIKIFYFEKNNNWFFFAPLTK 458          
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: A0A8F0FCX9_9PHAE (NADH dehydrogenase subunit 2 n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0FCX9_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 3.360e-71
Identity = 127/232 (54.74%), Postives = 161/232 (69.40%), Query Frame = 1
Query:    1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLNPAQKK---WLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFVAIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSK 687
            K+GAAPYH+W+ADVYEGAP LVS +FA VPK A  +VI RI   S  SFF  LW   F    +LSL++GCL GL E KIKRL AFS I HVGFLCL L+  SIE +QA+ FYL+IY+LT  F+  YV+ L+ A       L+  D +G+A+SNP+ AL +  M FSLAGIPPFGGFF+K+ +F+ L+D   +      + TSV+SAFYYLR+IKI +FEK+  W +F  LSK
Sbjct:  229 KIGAAPYHMWIADVYEGAPALVSFLFAVVPKFAFFVVILRIVFTSFWSFFPTLWEDFFCICGLLSLLIGCLCGLGETKIKRLLAFSSIGHVGFLCLGLASGSIEGVQAVLFYLLIYMLTAAFLWVYVVHLDLASTPSGTLLTFADGIGLARSNPLLALGVVLMIFSLAGIPPFGGFFAKLNIFVGLVDSSFYILALFTVFTSVISAFYYLRLIKIFYFEKNNNWFFFPSLSK 460          
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: A0A8F0K0T6_9PHAE (NADH dehydrogenase subunit 2 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0K0T6_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 5.360e-70
Identity = 124/234 (52.99%), Postives = 164/234 (70.09%), Query Frame = 1
Query:    1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLN----PAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFV-AIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSK 687
            KLGAAPYH+W+ADVYEGAPT+VS IFA VPK A+ +VI R++  S  SFF   W   F    +LSL +GC  GL E KIKRL AFS + HVGFLCL LSC ++E +Q + FYL+IY+LT+ F+  YV+ LN         + S  D +G+ +SNP+    +  + FSLAGIPP GGFF+K+ +F+ L+D  SFY V V A++TSV+SAFYY+R+IKI +FEK++ W +F  LSK
Sbjct:  229 KLGAAPYHMWIADVYEGAPTIVSFIFAVVPKFAVFVVILRLSFTSFWSFFPIFWEDFFCVCGLLSLFIGCFCGLGETKIKRLLAFSSVGHVGFLCLGLSCGNLEGVQGVLFYLLIYMLTSSFLWGYVVYLNLDATRHNSSFTSFTDAIGLVKSNPLLGFGVVLILFSLAGIPPLGGFFAKLNIFVGLVDA-SFYIVGVFAVLTSVISAFYYIRLIKIFYFEKNKDWFFFAPLSK 461          
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: Q94Z01_PYLLI (NADH dehydrogenase subunit 2 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z01_PYLLI)

HSP 1 Score: 229 bits (585), Expect = 1.970e-69
Identity = 123/230 (53.48%), Postives = 162/230 (70.43%), Query Frame = 1
Query:    1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLN-PAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFVAIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSK 687
            KLGAAPYH+W+ADVYEGAPT VSLIFA VPK A+ +V+ R++ +S  SFF   W   F F  + SL +GCL  L E KIKRL AFS + HVGFLCL +   S+E +QA   YLIIY+LT  F+  YVL L+  ++   LS  D VG+ +SNP   L +  M FSLAGIPPFGGFF+K+ +FI+L+D   +     A++TSV+SAFYY+R+IKI +FEK++ W +F+ L+K
Sbjct:  229 KLGAAPYHMWIADVYEGAPTQVSLIFAVVPKAALFVVVLRLSYMSFWSFFPSFWESFFCFCGLFSLFIGCLCSLGETKIKRLLAFSSVGHVGFLCLGVVSGSLEGVQATLLYLIIYMLTAAFLWVYVLHLDLSSESSLLSFSDAVGLVRSNPFLGLGVALMIFSLAGIPPFGGFFAKLNIFISLVDSSLYLVSIFAVLTSVISAFYYMRLIKIFYFEKNKKWFFFSPLTK 458          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FD12_9PHAE2.530e-9869.00NADH dehydrogenase subunit 2 n=1 Tax=Protohalopter... [more]
A0A4Y5T7S4_9PHAE7.910e-8557.83NADH dehydrogenase subunit 2 n=1 Tax=Dictyopteris ... [more]
Q2TUB1_DICDH7.910e-8558.70NADH dehydrogenase subunit 2 n=1 Tax=Dictyota dich... [more]
Q2TUE9_9PHAE1.520e-7255.79NADH dehydrogenase subunit 2 n=2 Tax=Desmarestia T... [more]
Q2TUJ1_FUCVE1.200e-7154.08NADH dehydrogenase subunit 2 n=3 Tax=Fucus TaxID=3... [more]
A0A3G5FPS0_9PHAE3.200e-7156.47NADH dehydrogenase subunit 2 n=1 Tax=Cladosiphon o... [more]
E6ZES5_ECTSI3.200e-7154.78NADH dehydrogenase subunit 2 n=1 Tax=Ectocarpus si... [more]
A0A8F0FCX9_9PHAE3.360e-7154.74NADH dehydrogenase subunit 2 n=3 Tax=Laminariales ... [more]
A0A8F0K0T6_9PHAE5.360e-7052.99NADH dehydrogenase subunit 2 n=1 Tax=Analipus japo... [more]
Q94Z01_PYLLI1.970e-6953.48NADH dehydrogenase subunit 2 n=1 Tax=Pylaiella lit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81683contigS-dermatodea_contig81683:2..694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score160.6
Seed ortholog evalue8.7e-37
Seed eggNOG ortholog1528098.NOVO_08135
Preferred namenuoN
KEGG rclassRC00061
KEGG koko:K00343
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
GOsGO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564
EggNOG free text desc.NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
EggNOG OGs1MV56@1224,2TQMX@28211,47EYV@766,COG1007@1,COG1007@2
EC1.6.5.3
COG Functional cat.C
Best tax levelRickettsiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorysignal anchor
Exons1
Model size693
Cds size693
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925325.959193-CDS-S-dermatodea_contig81683:1..6941622925325.959193-CDS-S-dermatodea_contig81683:1..694Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81683 2..694 +
1694079857.0007799-CDS-S-dermatodea_contig81683:1..6941694079857.0007799-CDS-S-dermatodea_contig81683:1..694Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81683 2..694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81683.16365.1prot_S-dermatodea_contig81683.16365.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81683 2..694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81683.16365.1

>prot_S-dermatodea_contig81683.16365.1 ID=prot_S-dermatodea_contig81683.16365.1|Name=mRNA_S-dermatodea_contig81683.16365.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=231bp
KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFF
SFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSC
SSIESLQAMFFYLIIYILTTVFMLNYVLCLNPAQKKWLSLVDTVGIAQSN
PIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFVAIITSV
LSAFYYLRIIKIIFFEKSQTWIYFNYLSKN*
back to top

mRNA from alignment at S-dermatodea_contig81683:2..694+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81683.16365.1 ID=mRNA_S-dermatodea_contig81683.16365.1|Name=mRNA_S-dermatodea_contig81683.16365.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=693bp|location=Sequence derived from alignment at S-dermatodea_contig81683:2..694+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGTTAGGCGCTGCACCGTATCATTTATGGGTGGCGGATGTATATGAAGG TGCACCTACTTTAGTAAGTTTAATTTTTGCTTCAGTACCTAAGCTTGCTA TTCTTATTGTTATTTGTCGTATTGCTCTTGTTAGCTCTATGTCTTTCTTT TCTTTTTTGTGGAGACCCTTATTTTTTTTTTTTGCTATTTTAAGCTTAAT AGTTGGTTGCTTAGGTGGTTTAAATGAAATTAAAATTAAACGACTTTTTG CGTTTAGTGGCATTAGTCATGTAGGATTTTTATGTCTTAGTCTTTCTTGT TCAAGTATAGAAAGCTTACAGGCAATGTTTTTTTATCTTATTATATATAT ATTAACCACGGTTTTTATGTTGAATTATGTCTTATGTCTTAATCCGGCAC AAAAAAAATGGTTATCTTTAGTTGATACTGTAGGTATAGCGCAATCTAAT CCGATCTTTGCTTTACTTATTTGTTTTATGACTTTTTCTCTTGCGGGTAT TCCACCATTTGGAGGATTCTTTTCTAAAGTTTTTGTATTTATTGCTTTAA TTGACCACTTATCTTTTTATGCTGTTTTTGTTGCAATAATTACAAGTGTC CTTTCTGCTTTTTATTATTTGCGCATTATAAAAATTATTTTTTTTGAAAA AAGTCAAACTTGGATTTATTTTAATTATTTATCAAAAAATTAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig81683:2..694+

>mRNA_S-dermatodea_contig81683.16365.1 ID=mRNA_S-dermatodea_contig81683.16365.1|Name=mRNA_S-dermatodea_contig81683.16365.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at S-dermatodea_contig81683:2..694+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGTTAGGCGCTGCACCGTATCATTTATGGGTGGCGGATGTATATGAAGG
TGCACCTACTTTAGTAAGTTTAATTTTTGCTTCAGTACCTAAGCTTGCTA
TTCTTATTGTTATTTGTCGTATTGCTCTTGTTAGCTCTATGTCTTTCTTT
TCTTTTTTGTGGAGACCCTTATTTTTTTTTTTTGCTATTTTAAGCTTAAT
AGTTGGTTGCTTAGGTGGTTTAAATGAAATTAAAATTAAACGACTTTTTG
CGTTTAGTGGCATTAGTCATGTAGGATTTTTATGTCTTAGTCTTTCTTGT
TCAAGTATAGAAAGCTTACAGGCAATGTTTTTTTATCTTATTATATATAT
ATTAACCACGGTTTTTATGTTGAATTATGTCTTATGTCTTAATCCGGCAC
AAAAAAAATGGTTATCTTTAGTTGATACTGTAGGTATAGCGCAATCTAAT
CCGATCTTTGCTTTACTTATTTGTTTTATGACTTTTTCTCTTGCGGGTAT
TCCACCATTTGGAGGATTCTTTTCTAAAGTTTTTGTATTTATTGCTTTAA
TTGACCACTTATCTTTTTATGCTGTTTTTGTTGCAATAATTACAAGTGTC
CTTTCTGCTTTTTATTATTTGCGCATTATAAAAATTATTTTTTTTGAAAA
AAGTCAAACTTGGATTTATTTTAATTATTTATCAAAAAATTAGAAGTTAG
GCGCTGCACCGTATCATTTATGGGTGGCGGATGTATATGAAGGTGCACCT
ACTTTAGTAAGTTTAATTTTTGCTTCAGTACCTAAGCTTGCTATTCTTAT
TGTTATTTGTCGTATTGCTCTTGTTAGCTCTATGTCTTTCTTTTCTTTTT
TGTGGAGACCCTTATTTTTTTTTTTTGCTATTTTAAGCTTAATAGTTGGT
TGCTTAGGTGGTTTAAATGAAATTAAAATTAAACGACTTTTTGCGTTTAG
TGGCATTAGTCATGTAGGATTTTTATGTCTTAGTCTTTCTTGTTCAAGTA
TAGAAAGCTTACAGGCAATGTTTTTTTATCTTATTATATATATATTAACC
ACGGTTTTTATGTTGAATTATGTCTTATGTCTTAATCCGGCACAAAAAAA
ATGGTTATCTTTAGTTGATACTGTAGGTATAGCGCAATCTAATCCGATCT
TTGCTTTACTTATTTGTTTTATGACTTTTTCTCTTGCGGGTATTCCACCA
TTTGGAGGATTCTTTTCTAAAGTTTTTGTATTTATTGCTTTAATTGACCA
CTTATCTTTTTATGCTGTTTTTGTTGCAATAATTACAAGTGTCCTTTCTG
CTTTTTATTATTTGCGCATTATAAAAATTATTTTTTTTGAAAAAAGTCAA
ACTTGGATTTATTTTAATTATTTATCAAAAAATTAG
back to top