mRNA_S-dermatodea_contig8168.16363.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8168.16363.1
Unique NamemRNA_S-dermatodea_contig8168.16363.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8168.16363.1 vs. uniprot
Match: D8LJI4_ECTSI (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI4_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 1.950e-40
Identity = 80/117 (68.38%), Postives = 91/117 (77.78%), Query Frame = 1 
Query:    7 AGGFEAHARVMAHDVLNNSNDWEKRRKALISMQQVVEDIGKS----GGQTGPTVFTSDVWRVLKEPLKHTLNDLRSAIVKEACLLLEKLSTAAGNSMGALMRDMLNVLLQLVANGNS 345
            AG  EA A  +A +V  N +DWE+RRKAL SMQQ  +D GK+    GG     VFT++VWR L+EPLKHTLNDLRSAIVKEAC+LLEKLS AAGN M ALMRDMLNVLLQL+ANGNS
Sbjct:    7 AGTLEAAALSLAQEVSGNPDDWERRRKALYSMQQAADDAGKALSAAGGGGEKAVFTAEVWRYLREPLKHTLNDLRSAIVKEACVLLEKLSDAAGNYMAALMRDMLNVLLQLLANGNS 123
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BLAST of mRNA_S-dermatodea_contig8168.16363.1 vs. uniprot
Match: A0A6H5KBA3_9PHAE (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBA3_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.190e-39
Identity = 79/116 (68.10%), Postives = 90/116 (77.59%), Query Frame = 1 
Query:   10 GGFEAHARVMAHDVLNNSNDWEKRRKALISMQQVVEDIGKS----GGQTGPTVFTSDVWRVLKEPLKHTLNDLRSAIVKEACLLLEKLSTAAGNSMGALMRDMLNVLLQLVANGNS 345
            G  EA A  +A +V  N +DWE+RRKAL SMQQ V+D GK+     G     VFT++VWR L+EPLKHTLNDLRSAIVKEAC+LLEKLS AAGN M ALMRDMLNVLLQL+ANGNS
Sbjct:    8 GTLEAAALSLAQEVSGNPDDWERRRKALYSMQQAVDDAGKALSAASGGGEKAVFTAEVWRYLREPLKHTLNDLRSAIVKEACVLLEKLSDAAGNYMAALMRDMLNVLLQLLANGNS 123
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BLAST of mRNA_S-dermatodea_contig8168.16363.1 vs. uniprot
Match: A0A7R9UDW2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDW2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.440e-13
Identity = 38/105 (36.19%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:   37 MAHDVLNNSNDWEKRRKALISMQQV---VEDIGKSGGQTGPTVFTSDVWRVLKEPLKHTLNDLRSAIVKEACLLLEKLSTAAGNSMGALMRDMLNVLLQLVANGN 342
            +A ++L+N ++WEKR  A++ + +     ED+ ++            +WRVLKEPLK  + DLRS +V++AC  LE L+    +    L+RD++  L+Q +ANGN
Sbjct:   17 VAQEILSNEDEWEKRDAAVLRLSEAFQGAEDVAEASADD-----LKSLWRVLKEPLKCVVTDLRSELVRDACAALEVLAAVTRDGFRPLLRDLMTHLVQNLANGN 116
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BLAST of mRNA_S-dermatodea_contig8168.16363.1 vs. uniprot
Match: A0A2D4C9E0_PYTIN (CAP-Gly domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9E0_PYTIN)

HSP 1 Score: 59.3 bits (142), Expect = 6.740e-8
Identity = 34/98 (34.69%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:   49 VLNNSNDWEKRRKALISMQQVVEDIGKSGGQTGPTVFTSDVWRVLKEPLKHTLNDLRSAIVKEACLLLEKLSTAAGNSMGALMRDMLNVLLQLVANGN 342
            +  N ++W +R  AL+ ++Q  E + +     G  V  + +WR LK PLK  L DLRS IVKE C++L  ++ A  ++M   +R++L  L+++  +GN
Sbjct:   17 IARNGDNWVERMHALVDIRQRFEAL-QDADDAGALVDAA-LWRSLK-PLKGMLQDLRSQIVKEVCVVLTTMALATKDAMAPFLREVLPTLVEVRGSGN 111
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BLAST of mRNA_S-dermatodea_contig8168.16363.1 vs. uniprot
Match: A0A7S3H2K9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H2K9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.320e-7
Identity = 29/89 (32.58%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:   58 NSNDWEKRRKALISMQQVVEDIGKSGGQTGPTVFTSDVWRVLKEPLKHTLNDLRSAIVKEACLLLEKLSTAAGNSMGALMRDMLNVLLQ 324
            ++  WE R KA++ +  +V        +      T++++R+LKEP+K+ + DLRS  V++ C  L KLS  AG+ M   +RD  + +L+
Sbjct:   22 DAESWEIRNKAILQLTDLVSRFKDEPDEIINEHLTANIFRMLKEPVKNMILDLRSQQVRDTCQFLMKLSDIAGDRMKPFLRDSFSTVLE 110
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BLAST of mRNA_S-dermatodea_contig8168.16363.1 vs. uniprot
Match: A0A2D4C5Q4_PYTIN (CAP-Gly domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5Q4_PYTIN)

HSP 1 Score: 57.8 bits (138), Expect = 2.140e-7
Identity = 34/98 (34.69%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:   49 VLNNSNDWEKRRKALISMQQVVEDIGKSGGQTGPTVFTSDVWRVLKEPLKHTLNDLRSAIVKEACLLLEKLSTAAGNSMGALMRDMLNVLLQLVANGN 342
            +  N ++W +R  AL  ++Q  E + +     G  V  + +WR LK PLK  L DLRS IVKE C++L  ++ A  ++M   +R++L  L+++  +GN
Sbjct:   17 IARNGDNWVERMHALADIRQRFEAL-QDADDAGALVDAA-LWRSLK-PLKGMLQDLRSQIVKEVCVVLTTMALATKDAMAPFLREVLPTLVEVRGSGN 111
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BLAST of mRNA_S-dermatodea_contig8168.16363.1 vs. uniprot
Match: A0A1I8IK44_9PLAT (TOG domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8IK44_9PLAT)

HSP 1 Score: 53.1 bits (126), Expect = 9.720e-6
Identity = 33/100 (33.00%), Postives = 51/100 (51.00%), Query Frame = 1 
Query:   40 AHDVLN-NSNDWEKRRKALISMQQVVEDIGKSGGQTGPTVFTSDVWRVLKEPLKHTLNDLRSAIVKEACLLLEKLSTAAGNSMGALMRDMLNVLLQLVAN 336
            A ++L+ N  DWEKR + L  ++ +V   G    +  P +      R L+ P +  + DLRS +V+EAC+ +  LS   GN        +L  LL L+AN
Sbjct:   67 AREILSGNVEDWEKRVECLKQLRSLVLAGGAEYDEFAPGL------RALEVPFRTCVTDLRSLVVREACITVAHLSRELGNKFDHFAESVLESLLSLIAN 160
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BLAST of mRNA_S-dermatodea_contig8168.16363.1 vs. uniprot
Match: A0A267FQM7_9PLAT (Uncharacterized protein (Fragment) n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267FQM7_9PLAT)

HSP 1 Score: 53.1 bits (126), Expect = 1.040e-5
Identity = 33/100 (33.00%), Postives = 51/100 (51.00%), Query Frame = 1 
Query:   40 AHDVLN-NSNDWEKRRKALISMQQVVEDIGKSGGQTGPTVFTSDVWRVLKEPLKHTLNDLRSAIVKEACLLLEKLSTAAGNSMGALMRDMLNVLLQLVAN 336
            A ++L+ N  DWEKR + L  ++ +V   G    +  P +      R L+ P +  + DLRS +V+EAC+ +  LS   GN        +L  LL L+AN
Sbjct:   74 AREILSGNVEDWEKRVECLKQLRSLVLAGGAEYDEFAPGL------RALEVPFRTCVTDLRSLVVREACITVAHLSRELGNKFDHFAESVLESLLSLIAN 167
[Close]
BLAST of mRNA_S-dermatodea_contig8168.16363.1 vs. uniprot
Match: A0A1I8IGW1_9PLAT (TOG domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8IGW1_9PLAT)

HSP 1 Score: 53.1 bits (126), Expect = 1.050e-5
Identity = 33/100 (33.00%), Postives = 51/100 (51.00%), Query Frame = 1 
Query:   40 AHDVLN-NSNDWEKRRKALISMQQVVEDIGKSGGQTGPTVFTSDVWRVLKEPLKHTLNDLRSAIVKEACLLLEKLSTAAGNSMGALMRDMLNVLLQLVAN 336
            A ++L+ N  DWEKR + L  ++ +V   G    +  P +      R L+ P +  + DLRS +V+EAC+ +  LS   GN        +L  LL L+AN
Sbjct:  799 AREILSGNVEDWEKRVECLKQLRSLVLAGGAEYDEFAPGL------RALEVPFRTCVTDLRSLVVREACITVAHLSRELGNKFDHFAESVLESLLSLIAN 892
[Close]
BLAST of mRNA_S-dermatodea_contig8168.16363.1 vs. uniprot
Match: A0A6Q2Y4Y3_ESOLU (Cytoplasmic linker associated protein 1a n=1 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2Y4Y3_ESOLU)

HSP 1 Score: 51.6 bits (122), Expect = 3.620e-5
Identity = 36/98 (36.73%), Postives = 51/98 (52.04%), Query Frame = 1 
Query:   46 DVLNNS-NDWEKRRKALISMQQVVEDIGKSGGQTGPTVFTSDVWRVLKEPLKHTLNDLRSAIVKEACLLLEKLSTAAGNSMGALMRDMLNVLLQLVAN 336
            DVL++  NDWE R  AL  ++ ++       G      F   + R+L+ PLK +  DLRS +V+EAC+ L  LST  GN        ++  LL LV N
Sbjct:   98 DVLSDDKNDWEHRVTALKKVRSLL-----LAGALDYDSFPQQL-RLLEAPLKLSAKDLRSQVVREACITLGYLSTLMGNRFDHCAETLMPTLLNLVPN 189
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8168.16363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJI4_ECTSI1.950e-4068.38CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KBA3_9PHAE1.190e-3968.10CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7R9UDW2_9STRA1.440e-1336.19Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A2D4C9E0_PYTIN6.740e-834.69CAP-Gly domain-containing protein n=2 Tax=Pythium ... [more]
A0A7S3H2K9_9STRA1.320e-732.58Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2D4C5Q4_PYTIN2.140e-734.69CAP-Gly domain-containing protein (Fragment) n=1 T... [more]
A0A1I8IK44_9PLAT9.720e-633.00TOG domain-containing protein n=1 Tax=Macrostomum ... [more]
A0A267FQM7_9PLAT1.040e-533.00Uncharacterized protein (Fragment) n=2 Tax=Macrost... [more]
A0A1I8IGW1_9PLAT1.050e-533.00TOG domain-containing protein n=1 Tax=Macrostomum ... [more]
A0A6Q2Y4Y3_ESOLU3.620e-536.73Cytoplasmic linker associated protein 1a n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8168contigS-dermatodea_contig8168:3417..5199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.8
Seed ortholog evalue7.6e-34
Seed eggNOG ortholog2880.D8LJI4
KEGG koko:K10423,ko:K10758
EggNOG free text desc.microtubule binding
EggNOG OGsCOG5244@1,KOG4568@2759
EC1.8.3.2
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size349
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925325.9130135-CDS-S-dermatodea_contig8168:3416..36231622925325.9130135-CDS-S-dermatodea_contig8168:3416..3623Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8168 3417..3623 +
1694079856.9751594-CDS-S-dermatodea_contig8168:3416..36231694079856.9751594-CDS-S-dermatodea_contig8168:3416..3623Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8168 3417..3623 +
1622925325.9240503-CDS-S-dermatodea_contig8168:5059..51971622925325.9240503-CDS-S-dermatodea_contig8168:5059..5197Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8168 5060..5197 +
1694079856.9887326-CDS-S-dermatodea_contig8168:5059..51971694079856.9887326-CDS-S-dermatodea_contig8168:5059..5197Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8168 5060..5197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8168.16363.1prot_S-dermatodea_contig8168.16363.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8168 3417..5197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8168.16363.1

>prot_S-dermatodea_contig8168.16363.1 ID=prot_S-dermatodea_contig8168.16363.1|Name=mRNA_S-dermatodea_contig8168.16363.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=115bp
VPAGGFEAHARVMAHDVLNNSNDWEKRRKALISMQQVVEDIGKSGGQTGP
TVFTSDVWRVLKEPLKHTLNDLRSAIVKEACLLLEKLSTAAGNSMGALMR
DMLNVLLQLVANGNS
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mRNA from alignment at S-dermatodea_contig8168:3417..5199+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8168.16363.1 ID=mRNA_S-dermatodea_contig8168.16363.1|Name=mRNA_S-dermatodea_contig8168.16363.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1783bp|location=Sequence derived from alignment at S-dermatodea_contig8168:3417..5199+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCCGGCAGGCGGCTTCGAGGCCCATGCCCGAGTCATGGCGCACGACGT
GCTGAACAACTCGAACGACTGGGAGAAGAGGCGGAAGGCTCTGATCTCCA
TGCAGCAGGTCGTGGAGGACATTGGAAAGTCCGGCGGGCAAACGGGACCT
ACCGTATTCACCTCCGACGTTTGGCGAGTCTTGAAGGAGCCGCTAAAGCA
CACGCTGGTGAGGATGAACCCTATGTAGGTATTGAGAGGCGAGGGGGGGA
CGGGCGTGCGGCGAGGCAGAGCCGCCCGCCGCAGCTGTGGTGTTGTGCAT
GCCGCGTGCGGTTGGGTGCGGTGGTGTGACCCTTTTTTCTGGGCTGAGTT
ACGTTTTAGCGCCGAACTTGGTGACTCATGTGGGGGGTCGTTTGTCGTCT
TTTCCGTCCGAGAAACTACAAAATCCCAGAAATAAACAAACCTGTAAAAC
TTGTGTTGACACACACACATTTTCCTGTTGACTATTTCATTTCACGGTTG
TCAACTGTAGGCTCTATACACGTACGCCACCCCTCGTACCAGCTACAGTA
TGTACGCGTGGAAGTTTTATAAAAAACAAAATCGAGTTCACATGTGCATC
CCTAACTCACAGGCACACTGGTTCCAGGGGAAACCCCAGAGGACACCGAA
CGTAGGCCTGTCGTAACTTTTCCACCGCGGCTACTTGAGGAGTATAGTAC
TTTTATATCTGTTGGGTGTGAAATGCGGTGAGAGAGGCCAAATATACCCT
GTAAGGGATATAAACCTCTGCCCTGCTGACCGCTGATCGTGGGGCGACAC
AATCTCAATCTTGTGCAAAATGTGGCCTGTCGCAATAGTAGCTCCCTCCA
AATCCGGTATTTGTCGTAGCAGGACCTTGGCACGTTGTTTTTGTTGTATA
GAAACAGAACACAGAAAGTGTATAATCCATAACTCGTCAGGACAGGACCC
AGGCGGATTTTGTTATCACAAAACTGAGATAATTTCACGTCCGCCCGAAA
TATGTATTTTGGTACTATGCATCGGTGTTTGTGTGTAAAGGTTAAGGTTG
CCAGACTTGGTGAGGACATTTTGGGTGTGATGAGCCCCTCTTGTGGGAGG
GGGGGGTGTACTCATTGATCGTGCATCCCGTAGTCGTTAGACCATAGACG
GGGGGGGGGGTGTTTTTCGTTTTTCGTTTTGTGTTTTGCCGGGTACCCGG
CCAAAGTCGGGTTACCCGCGGTTTTTTCTTTTTTAGCAGGCCCAATTTCT
GAGGTATTTTCCCTTTGTTTCCGAGCGCTTGATTTGTGTCAATTCTTTCT
TGTTTACTATAGTAAATATCAATACTTGTAGGTAATTCCGTAGGGTTTTT
CTCGATACATCTCTCGATTTTTGTCATCTGACCACGAGATAGCGGGATCG
GCAACCATTGGCCGGCCGACCGGCTGTAATTGTGATAATCAATATAATCA
ATCAATCAATCAATTATTAATCAATCACCCAATCAAACAACCATTCACTA
ATTTTTTTTTTTTATCAATATCAATATATCAACCACTCAATCAATCAATC
AATCACTTATTCAACCAGTTAATCAATCATTAATAAATCAATCAAAAAAG
TTTAACACAATCGAAACACGATCTGATCTGAATCTGCACGCAGAACGACC
TCCGATCAGCTATCGTCAAGGAGGCGTGTCTGCTCTTGGAGAAGCTGTCC
ACCGCTGCCGGTAACTCCATGGGCGCCCTCATGAGGGACATGCTCAACGT
GCTGCTCCAGCTTGTCGCCAACGGCAACTCGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig8168:3417..5199+

>mRNA_S-dermatodea_contig8168.16363.1 ID=mRNA_S-dermatodea_contig8168.16363.1|Name=mRNA_S-dermatodea_contig8168.16363.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at S-dermatodea_contig8168:3417..5199+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCCGGCAGGCGGCTTCGAGGCCCATGCCCGAGTCATGGCGCACGACGT
GCTGAACAACTCGAACGACTGGGAGAAGAGGCGGAAGGCTCTGATCTCCA
TGCAGCAGGTCGTGGAGGACATTGGAAAGTCCGGCGGGCAAACGGGACCT
ACCGTATTCACCTCCGACGTTTGGCGAGTCTTGAAGGAGCCGCTAAAGCA
CACGCTGGTGCCGGCAGGCGGCTTCGAGGCCCATGCCCGAGTCATGGCGC
ACGACGTGCTGAACAACTCGAACGACTGGGAGAAGAGGCGGAAGGCTCTG
ATCTCCATGCAGCAGGTCGTGGAGGACATTGGAAAGTCCGGCGGGCAAAC
GGGACCTACCGTATTCACCTCCGACGTTTGGCGAGTCTTGAAGGAGCCGC
TAAAGCACACGCTGAACGACCTCCGATCAGCTATCGTCAAGGAGGCGTGT
CTGCTCTTGGAGAAGCTGTCCACCGCTGCCGGTAACTCCATGGGCGCCCT
CATGAGGGACATGCTCAACGTGCTGCTCCAGCTTGTCGCCAACGGCAACT
CGAACGACCTCCGATCAGCTATCGTCAAGGAGGCGTGTCTGCTCTTGGAG
AAGCTGTCCACCGCTGCCGGTAACTCCATGGGCGCCCTCATGAGGGACAT
GCTCAACGTGCTGCTCCAGCTTGTCGCCAACGGCAACTCG
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