mRNA_S-dermatodea_contig81510.16352.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81510.16352.1
Unique NamemRNA_S-dermatodea_contig81510.16352.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig81510.16352.1 vs. uniprot
Match: A0A2I4CWC1_9TELE (crooked neck-like protein 1 n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4CWC1_9TELE)

HSP 1 Score: 60.5 bits (145), Expect = 1.500e-10
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 QEMLGNSAKARAIFERWMEWEPEDNAWSAYVKFEMRQEQPAQAR 132
            +EMLGN A  R +FERWMEWEPE+ AW +Y+ FE+R ++  +AR
Sbjct:   36 EEMLGNVAGCRQVFERWMEWEPEEQAWHSYINFELRYKEVDKAR 79
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BLAST of mRNA_S-dermatodea_contig81510.16352.1 vs. uniprot
Match: UPI000719E0EE (crooked neck-like protein 1 n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719E0EE)

HSP 1 Score: 62.4 bits (150), Expect = 3.650e-10
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 QEMLGNSAKARAIFERWMEWEPEDNAWSAYVKFEMR 108
            +EMLGN A AR +FERWMEWEPE+ AW  Y+KFE+R
Sbjct:   34 EEMLGNVAGARQVFERWMEWEPEEQAWQTYIKFELR 69
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BLAST of mRNA_S-dermatodea_contig81510.16352.1 vs. uniprot
Match: A0A3Q3JGZ9_MONAL (Crooked neck pre-mRNA splicing factor 1 n=1 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3JGZ9_MONAL)

HSP 1 Score: 60.5 bits (145), Expect = 1.740e-9
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 QEMLGNSAKARAIFERWMEWEPEDNAWSAYVKFEMRQEQPAQAR 132
            +EMLGN A  R +FERWMEWEPE+ AW +Y+ FE+R ++  +AR
Sbjct:  161 EEMLGNVAGCRQVFERWMEWEPEEQAWHSYINFELRYKEVDKAR 204
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BLAST of mRNA_S-dermatodea_contig81510.16352.1 vs. uniprot
Match: Q4SD16_TETNG ((spotted green pufferfish) hypothetical protein n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4SD16_TETNG)

HSP 1 Score: 60.1 bits (144), Expect = 2.380e-9
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    4 EMLGNSAKARAIFERWMEWEPEDNAWSAYVKFEMRQEQPAQAR 132
            EMLGN A  R +FERWMEWEPE+ AW +Y+ FE+R ++  +AR
Sbjct:  206 EMLGNPAGCRQVFERWMEWEPEEQAWHSYINFELRYKEVDKAR 248
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BLAST of mRNA_S-dermatodea_contig81510.16352.1 vs. uniprot
Match: A0A4Z2BQ93_9TELE (Uncharacterized protein n=2 Tax=Takifugu TaxID=31032 RepID=A0A4Z2BQ93_9TELE)

HSP 1 Score: 60.1 bits (144), Expect = 2.380e-9
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    4 EMLGNSAKARAIFERWMEWEPEDNAWSAYVKFEMRQEQPAQAR 132
            EMLGN A  R +FERWMEWEPE+ AW +Y+ FE+R ++  +AR
Sbjct:  187 EMLGNPAGCRQVFERWMEWEPEEQAWHSYINFELRYKEVDKAR 229
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BLAST of mRNA_S-dermatodea_contig81510.16352.1 vs. uniprot
Match: H3CZE3_TETNG (Crooked neck pre-mRNA splicing factor 1 n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3CZE3_TETNG)

HSP 1 Score: 60.1 bits (144), Expect = 2.380e-9
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    4 EMLGNSAKARAIFERWMEWEPEDNAWSAYVKFEMRQEQPAQAR 132
            EMLGN A  R +FERWMEWEPE+ AW +Y+ FE+R ++  +AR
Sbjct:  160 EMLGNPAGCRQVFERWMEWEPEEQAWHSYINFELRYKEVDKAR 202
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BLAST of mRNA_S-dermatodea_contig81510.16352.1 vs. uniprot
Match: A0A183KDF0_9TREM (Uncharacterized protein n=1 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183KDF0_9TREM)

HSP 1 Score: 60.1 bits (144), Expect = 2.380e-9
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 QEMLGNSAKARAIFERWMEWEPEDNAWSAYVKFEMRQEQPAQAR 132
            +E LGN A AR IFERWMEW+PE+ AW AY+ FE+R ++  +AR
Sbjct:   36 EETLGNVAGARQIFERWMEWQPEEQAWHAYINFELRYKEMDRAR 79
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BLAST of mRNA_S-dermatodea_contig81510.16352.1 vs. uniprot
Match: A0A835TZ36_9PASS (Uncharacterized protein n=1 Tax=Lamprotornis superbus TaxID=245042 RepID=A0A835TZ36_9PASS)

HSP 1 Score: 58.2 bits (139), Expect = 3.670e-9
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 QEMLGNSAKARAIFERWMEWEPEDNAWSAYVKFEMR 108
            +EMLGN A +R +FERWMEW+PE+ AW +Y+ FE+R
Sbjct:    2 EEMLGNVAGSRQVFERWMEWQPEEQAWHSYINFELR 37
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BLAST of mRNA_S-dermatodea_contig81510.16352.1 vs. uniprot
Match: A0A444UJK5_ACIRT (Ral GTPase-activating protein subunit alpha-2 n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444UJK5_ACIRT)

HSP 1 Score: 58.9 bits (141), Expect = 6.090e-9
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    4 EMLGNSAKARAIFERWMEWEPEDNAWSAYVKFEMRQEQPAQAR 132
            EMLGN A  R +FERWMEW+PE+ AW +Y+ FE+R ++  +AR
Sbjct: 1712 EMLGNIAGCRLVFERWMEWQPEEQAWHSYINFELRYKEVEKAR 1754
[Close]
BLAST of mRNA_S-dermatodea_contig81510.16352.1 vs. uniprot
Match: A0A444TWW0_ACIRT (Crooked neck-like protein 1 n=5 Tax=Acipenseroidei TaxID=186622 RepID=A0A444TWW0_ACIRT)

HSP 1 Score: 58.9 bits (141), Expect = 6.090e-9
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    4 EMLGNSAKARAIFERWMEWEPEDNAWSAYVKFEMRQEQPAQAR 132
            EMLGN A  R +FERWMEW+PE+ AW +Y+ FE+R ++  +AR
Sbjct:  159 EMLGNIAGCRLVFERWMEWQPEEQAWHSYINFELRYKEVEKAR 201
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81510.16352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I4CWC1_9TELE1.500e-1056.82crooked neck-like protein 1 n=1 Tax=Austrofundulus... [more]
UPI000719E0EE3.650e-1069.44crooked neck-like protein 1 n=1 Tax=Priapulus caud... [more]
A0A3Q3JGZ9_MONAL1.740e-956.82Crooked neck pre-mRNA splicing factor 1 n=1 Tax=Mo... [more]
Q4SD16_TETNG2.380e-958.14(spotted green pufferfish) hypothetical protein n=... [more]
A0A4Z2BQ93_9TELE2.380e-958.14Uncharacterized protein n=2 Tax=Takifugu TaxID=310... [more]
H3CZE3_TETNG2.380e-958.14Crooked neck pre-mRNA splicing factor 1 n=1 Tax=Te... [more]
A0A183KDF0_9TREM2.380e-959.09Uncharacterized protein n=1 Tax=Schistosoma curass... [more]
A0A835TZ36_9PASS3.670e-961.11Uncharacterized protein n=1 Tax=Lamprotornis super... [more]
A0A444UJK5_ACIRT6.090e-955.81Ral GTPase-activating protein subunit alpha-2 n=1 ... [more]
A0A444TWW0_ACIRT6.090e-955.81Crooked neck-like protein 1 n=5 Tax=Acipenseroidei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81510contigS-dermatodea_contig81510:202..336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size129
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925324.8787906-CDS-S-dermatodea_contig81510:201..3301622925324.8787906-CDS-S-dermatodea_contig81510:201..330Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81510 202..330 -
1694079856.215841-CDS-S-dermatodea_contig81510:201..3301694079856.215841-CDS-S-dermatodea_contig81510:201..330Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81510 202..330 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925324.8899798-UTR-S-dermatodea_contig81510:330..3361622925324.8899798-UTR-S-dermatodea_contig81510:330..336Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig81510 331..336 -
1694079856.2268047-UTR-S-dermatodea_contig81510:330..3361694079856.2268047-UTR-S-dermatodea_contig81510:330..336Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig81510 331..336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81510.16352.1prot_S-dermatodea_contig81510.16352.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81510 202..330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81510.16352.1

>prot_S-dermatodea_contig81510.16352.1 ID=prot_S-dermatodea_contig81510.16352.1|Name=mRNA_S-dermatodea_contig81510.16352.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=43bp
MLGNSAKARAIFERWMEWEPEDNAWSAYVKFEMRQEQPAQAR*
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mRNA from alignment at S-dermatodea_contig81510:202..336-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81510.16352.1 ID=mRNA_S-dermatodea_contig81510.16352.1|Name=mRNA_S-dermatodea_contig81510.16352.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at S-dermatodea_contig81510:202..336- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAGATGCTGGGGAATTCTGCGAAGGCGCGCGCTATCTTCGAGCGGTG
GATGGAGTGGGAGCCCGAGGACAACGCTTGGAGCGCCTACGTGAAGTTCG
AGATGCGGCAAGAGCAGCCCGCTCAAGCGAGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig81510:202..336-

>mRNA_S-dermatodea_contig81510.16352.1 ID=mRNA_S-dermatodea_contig81510.16352.1|Name=mRNA_S-dermatodea_contig81510.16352.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at S-dermatodea_contig81510:202..336- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGGGGAATTCTGCGAAGGCGCGCGCTATCTTCGAGCGGTGGATGGA
GTGGGAGCCCGAGGACAACGCTTGGAGCGCCTACGTGAAGTTCGAGATGC
GGCAAGAGCAGCCCGCTCAAGCGAGGTGAATGCTGGGGAATTCTGCGAAG
GCGCGCGCTATCTTCGAGCGGTGGATGGAGTGGGAGCCCGAGGACAACGC
TTGGAGCGCCTACGTGAAGTTCGAGATGCGGCAAGAGCAGCCCGCTCAAG
CGAGGTGA
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