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Homology
BLAST of mRNA_S-dermatodea_contig10226.163.1 vs. uniprot
Match: A0A6H5J6H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6H7_9PHAE) HSP 1 Score: 177 bits (448), Expect = 8.510e-49 Identity = 83/106 (78.30%), Postives = 96/106 (90.57%), Query Frame = 2
Query: 92 MVVGCQPLSGEPMRWIKDTVSGLANPHDAAARNRVAKMRKYIHQGGEINKCNKLGDTPLHEACAFIRDNGDSSKGRRRKV--LGKDRRKVGKKLSQRTLGEAGPLE 403
MVVGCQPL+GE MRW+K TVSGLANPHDAAA+NR+AKM KY+ QGG++NK NKLGDTPLHEACA+IRDNGDSSKG+RRK +GKDRRKVGKKL++R +GE GPLE
Sbjct: 1 MVVGCQPLAGESMRWLKHTVSGLANPHDAAAKNRLAKMEKYVQQGGDVNKPNKLGDTPLHEACAYIRDNGDSSKGKRRKGKGVGKDRRKVGKKLTRRQMGEGGPLE 106
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Ec32 ortholog | Ec-20_004510.1 |
| Exons | 3 |
| Model size | 403 |
| Cds size | 312 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622924146.1227214-UTR-S-dermatodea_contig10226:4111..4202 | 1622924146.1227214-UTR-S-dermatodea_contig10226:4111..4202 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig10226 4112..4202 - |
| 1694079049.1932564-UTR-S-dermatodea_contig10226:4111..4202 | 1694079049.1932564-UTR-S-dermatodea_contig10226:4111..4202 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig10226 4112..4202 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10226.163.1 >prot_S-dermatodea_contig10226.163.1 ID=prot_S-dermatodea_contig10226.163.1|Name=mRNA_S-dermatodea_contig10226.163.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
MVVGCQPLSGEPMRWIKDTVSGLANPHDAAARNRVAKMRKYIHQGGEINK
CNKLGDTPLHEACAFIRDNGDSSKGRRRKVLGKDRRKVGKKLSQRTLGEA
GPLE back to topmRNA from alignment at S-dermatodea_contig10226:1408..4202- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig10226.163.1 ID=mRNA_S-dermatodea_contig10226.163.1|Name=mRNA_S-dermatodea_contig10226.163.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2795bp|location=Sequence derived from alignment at S-dermatodea_contig10226:1408..4202- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGAATTTGATAAAAATTGGTGCTTTTTGCTCCGCCGCCGACTTTTTGT
CGGAGGGAGGGGCTCGACGGCGTGCGTTGGTTTGAAAGCCGATGGTGGTT
GGATGCCAGCCCCTATCGGGGGAACCAATGCGTTGGATCAAGGACACGGT
GTCGGGGCTGGCGAACCCTCATGATGCGGCCGCGCGGAATCGCGTGGCGA
AGGTGTGAAAGAAAATGACTCTGTTGTTGTAGCTTTTTGCTGTAGCTTTT
TGCTTTGCCTTTGCCTTTGCCTCTGCTTTGCTTTGGTCTCCAAATGGTCT
GTCTTTCTTTCTTATGTAATGATTATCTGAAAATGAAAAATGAGAGGAGG
GTGTGCTTGTGTTTTGTGTCTCGCTTTCGCCCTGCACTCAATTTTGCACT
ATTGATAAAGATAAGATAGGGCCTGTACTGATATATATAGCACTATCATA
AGAAGTACTACTGCTGTGTTGTTCACGTGCACACTGCTGCTGTGCTCTGC
TGTTGAGCCCTACACGCATATAGCCCCATATTTATTTTATATGCATGTAC
TGGTAGTAGTGTTACACAGACACGTCATGCATACATACTTGCATATAACA
ATGAATGAGTACGGAGAATATTGCGTAGGTATGCCTGCCTGGCTCGGGGC
TGATGGGAGACCTGATTTTTGCATTCTTTCATCAAAACACAAAAAAAGTG
AAAGTTGCAGCTTCCCCACCCAGGCATCCAGGCCCTTGCTCCCCCCCCAT
GGAGGTCAGGCAACTGTTTTCGTTGGCCCGAGCCCGCATGCATGCGATAG
CATCCCGGTCTGCTCTCCAGATAGAGCGGGGGCGTATCAACACAAATTTA
TAATCCACACATTTTCCTTCCGTATCATTATCATATGTATGACGTGACGT
TTTATACACTCCACTACAGTATTATAGTATACTATGATCACTATCATGCT
GTCCTCTGTGTACGTGCCTTCATCGGCCTCCTCGCACTCGTCATTTTTCA
GATCCGCTGATGATGACAACATTCAGGTATTCAGATTATATGCTCCTTGC
CTGCGTTTTCTCTTCTGTGATATCATGAGGTGTTTATGTACATAAGCGAT
TGGTCTGTCTTATGCATAATGATCATGGTGTGTTTTTAACGAACCAGATG
CGCAAATACATCCATCAAGGCGGGGAGATCAACAAATGCAACAAGCTGGG
AGACACACCTTTGCACGAGGTGCGTCAGGAGAGCAGGGGGTTTGGGGGCG
GGGAGGGGGGCGCAGATCGATATGGAATGAACAGAATGAGAGTGGAAAAA
ATCTGTGTTGGTGTTTGACAAATTTCAGGAGTATTCTGTGTTGGTTGGGG
ATGTCGTTTTTTGTCTTGCTATTAGTGTGAATTTGGACGAAAAGAGTCAA
CTCTACGTTTATTTTTAGATCAAAAGGGTCTCTTCCTCTTCTTCTTTTTT
TTTGCAAGTGTTTTTTGTGTCGTGGGTTTTCTGGTTGGCGAGAGAGCACG
CACCCCTCTATAAAGATAAATATATAGTTTGTCATGGTCAACGTGTCGCA
GCAACCCATGGGCCGGCTGGGCCGAGTATCATCATGATGTCCTTCTTCCG
ATTAACCCCGGCGGAGCGATGTGGGATGTGAGCCAGCTCCTTTTTTTGCG
CGCCGTTTGCGTCTATTTGTGTTTGCACATGCATGTAGTTCGCCCGCGCG
TGTCACCAGGGTTTTTTTTAGGAAAGAGGAGAGATCGATCGATGCGGATG
CAGATGCTGGTGTTTTTTTTTTTTTCAAGTGTCATTTTCTCCCCACACTA
CTACTTGTTGCACGAGACAGAAAACACAACACAAACAAGCAAGCGTCGGG
TTGACCGACATCTGAAAAATATATGAAACAAAAAAATATATTGATCTCAT
TTTTTTCTGCATGCCATTCCCAAAAACCATTGTTGTTATCATACCGCCCC
CCCCCACGGGCCCCCCACCGCCTTTACGCAACTCTAAAGTAGATACATTT
CTAAATTTGGTCCAGCATTATCGTAGACTGCTGTAGAAATCACAAGCAAA
AGAAGGCAAAATCAGCACCACGTGTAAATTAAACATGCTGTGATATCGTC
GAACATCGCTGATCGATCGTTGTTGTCACTACGCACTACAACTTCTCTGT
GACATATTATATAGGATACACAGGCTTTTTACACAGCATAATCTACCTCT
TACCAGGTATTTATTAATAGTTTCAGGTATTTATTAATAGTTTTTTAGGT
TACGTGATCACCAGGCTCGTTATCCCGGCCTTTTTTTTCCTTCTCTTTCC
GCACCTACCAGCTATTGTACTTCTGGCAAGTATCTTATTCTCTCAATTTT
TGTACAACAGTGCGTACTGCTCTATAAAACAAGCATGTACAAGAGGGTAT
GGTACTCTGTCTTTTCAATACAAAAGTGTCATGGTCAATAGTATTTGTAT
GCTGTAGTAGCCAGCTGCCACCGCGCACGGCTGCTACAATATCGCCATAC
GCTCTCGGAAGGGGTAGGTTTACGTTCGCAGTTGGCAGGACACGTTGGCT
GTACAAGTTTACACGACCCACACAACAGCCACTTACTCTGTTTCACTACT
GTAACCCGCCCTTCCACTCCAAAACTGAAACCGAAAACGAAAAACCGGTA
TCATACCGATCAATAGGCTTGCGCGTTCATCCGCGACAACGGCGACTCGA
GCAAGGGCAGGAGGCGCAAGGTACTGGGGAAGGACCGACGGAAAGTGGGG
AAGAAGCTCTCGCAGCGAACCCTTGGGGAGGCCGGGCCGCTGGAG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig10226:1408..4202- >mRNA_S-dermatodea_contig10226.163.1 ID=mRNA_S-dermatodea_contig10226.163.1|Name=mRNA_S-dermatodea_contig10226.163.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig10226:1408..4202- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGGTTGGATGCCAGCCCCTATCGGGGGAACCAATGCGTTGGATCAA
GGACACGGTGTCGGGGCTGGCGAACCCTCATGATGCGGCCGCGCGGAATC
GCGTGGCGAAGATGGTGGTTGGATGCCAGCCCCTATCGGGGGAACCAATG
CGTTGGATCAAGGACACGGTGTCGGGGCTGGCGAACCCTCATGATGCGGC
CGCGCGGAATCGCGTGGCGAAGATGCGCAAATACATCCATCAAGGCGGGG
AGATCAACAAATGCAACAAGCTGGGAGACACACCTTTGCACGAGATGCGC
AAATACATCCATCAAGGCGGGGAGATCAACAAATGCAACAAGCTGGGAGA
CACACCTTTGCACGAGGCTTGCGCGTTCATCCGCGACAACGGCGACTCGA
GCAAGGGCAGGAGGCGCAAGGTACTGGGGAAGGACCGACGGAAAGTGGGG
AAGAAGCTCTCGCAGCGAACCCTTGGGGAGGCCGGGCCGCTGGAGGCTTG
CGCGTTCATCCGCGACAACGGCGACTCGAGCAAGGGCAGGAGGCGCAAGG
TACTGGGGAAGGACCGACGGAAAGTGGGGAAGAAGCTCTCGCAGCGAACC
CTTGGGGAGGCCGGGCCGCTGGAG back to top
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