mRNA_S-dermatodea_contig8145.16342.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8145.16342.1
Unique NamemRNA_S-dermatodea_contig8145.16342.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8145.16342.1 vs. uniprot
Match: D7G7L2_ECTSI (G-patch_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L2_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 7.680e-6
Identity = 36/58 (62.07%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  127 PANAQE--GEKSLDQLAVEAIARESRVGGVEAASRNGLGLDSDRVIGMAA-TPGAGLG 291
            P  A+E  GEKSLDQLA EAIA+ES  G   +A   GLGLDSDRVIGM    P AG G
Sbjct:  118 PPTAEEPAGEKSLDQLAAEAIAKESVRGDGSSADAFGLGLDSDRVIGMIGKNPAAGEG 175
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8145.16342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7L2_ECTSI7.680e-662.07G-patch_2 domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8145contigS-dermatodea_contig8145:2311..3448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size296
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925324.1519306-CDS-S-dermatodea_contig8145:2310..24101622925324.1519306-CDS-S-dermatodea_contig8145:2310..2410Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8145 2311..2410 +
1694079855.7168615-CDS-S-dermatodea_contig8145:2310..24101694079855.7168615-CDS-S-dermatodea_contig8145:2310..2410Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8145 2311..2410 +
1622925324.1637733-CDS-S-dermatodea_contig8145:3252..34461622925324.1637733-CDS-S-dermatodea_contig8145:3252..3446Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8145 3253..3446 +
1694079855.7311625-CDS-S-dermatodea_contig8145:3252..34461694079855.7311625-CDS-S-dermatodea_contig8145:3252..3446Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8145 3253..3446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8145.16342.1prot_S-dermatodea_contig8145.16342.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8145 2311..3446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8145.16342.1

>prot_S-dermatodea_contig8145.16342.1 ID=prot_S-dermatodea_contig8145.16342.1|Name=mRNA_S-dermatodea_contig8145.16342.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=98bp
TVPGGDSDDSAAATAGPSSAGNTSTPVPLLTETGPPAATAAAPANAQEGE
KSLDQLAVEAIARESRVGGVEAASRNGLGLDSDRVIGMAATPGAGLGR
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mRNA from alignment at S-dermatodea_contig8145:2311..3448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8145.16342.1 ID=mRNA_S-dermatodea_contig8145.16342.1|Name=mRNA_S-dermatodea_contig8145.16342.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1138bp|location=Sequence derived from alignment at S-dermatodea_contig8145:2311..3448+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCGTGCCGGGGGGGGACAGCGACGATTCCGCCGCTGCCACCGCTGGCCC
GAGCAGCGCGGGAAACACCTCAACTCCTGTGCCTCTGCTGACTGAAACAG
GTGTGTGCGAGTGAGTGTACAGAAAGCGAGTGTACAGCAAGCAGTATACA
AGTATTAATATTATAGGGGGGTTGCATGATGCAACTACAGGTAGTACGTA
AGTCGCAGAATACAGCCGACACGATAGCATGCATGCTGGTGGCTGTGTAT
TTGTTCAACACCACTTTCATCTTCTGAGTCCTGATCTTCTAGCCTTGGAT
CGAGCACATTTTGCTGCCTGAACATGACCGAGCTTCTCGATGCACCTGGC
TGAGCGTACCCTGGATCCAGTACATTTGTGCCACCTGGGCACCATCTTTC
ATAACAATACAGCATCCAAACCCGTTTCGTGTCATGCTCCTCTCGGCTCT
CCAAGGACAGGGGACGCTGCGCAGTGTATGGCTTGACTCTTACCTCTGTG
CTGTGGTTTAGCTGCACTATCGTTAGCGTCAGCAGCCTTTGCCTCTCTGC
TTGGAATATCTACCCTTACCCAAAATTGTATGACAGCACATGTAACAGAA
TCACAGGAATCACAGGTGGGATAACCCCCGAGAACATTTATCTTGGCCTG
GTATGATACAGTATATACTTACAGAACTTAGCATTCAAGTATTTGCGGGG
ATTCATGACCCACGATTTGGAGATGACGTTTTTCTTGTCGCGCTCATGAT
ACGTTTATAGTATACACCCTAAAAGTAGTTGACTCTGTACCTGTATATCC
CCCCTTGCATTTATACCTTACTGAGAGATTACAGGGCGTGCCTACTTTCG
GTTTCGCCTGGAACTGTTTAGTGTGCCTGTGACCTCTGAGTTAGGAATGT
ACATATGAAATATACTTTGTTTTATTTTAACCACCCCAACAGGGCCACCG
GCCGCCACCGCGGCGGCTCCAGCTAACGCTCAAGAGGGAGAAAAGTCGCT
CGACCAGCTAGCCGTGGAAGCCATCGCTCGAGAATCTCGTGTGGGGGGCG
TTGAAGCCGCGAGCCGCAACGGCCTAGGCCTCGACTCTGACAGGGTCATC
GGGATGGCGGCGACGCCTGGGGCAGGCCTCGGCAGAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8145:2311..3448+

>mRNA_S-dermatodea_contig8145.16342.1 ID=mRNA_S-dermatodea_contig8145.16342.1|Name=mRNA_S-dermatodea_contig8145.16342.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at S-dermatodea_contig8145:2311..3448+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCGTGCCGGGGGGGGACAGCGACGATTCCGCCGCTGCCACCGCTGGCCC
GAGCAGCGCGGGAAACACCTCAACTCCTGTGCCTCTGCTGACTGAAACAG
ACCGTGCCGGGGGGGGACAGCGACGATTCCGCCGCTGCCACCGCTGGCCC
GAGCAGCGCGGGAAACACCTCAACTCCTGTGCCTCTGCTGACTGAAACAG
GGCCACCGGCCGCCACCGCGGCGGCTCCAGCTAACGCTCAAGAGGGAGAA
AAGTCGCTCGACCAGCTAGCCGTGGAAGCCATCGCTCGAGAATCTCGTGT
GGGGGGCGTTGAAGCCGCGAGCCGCAACGGCCTAGGCCTCGACTCTGACA
GGGTCATCGGGATGGCGGCGACGCCTGGGGCAGGCCTCGGCAGAGGCCAC
CGGCCGCCACCGCGGCGGCTCCAGCTAACGCTCAAGAGGGAGAAAAGTCG
CTCGACCAGCTAGCCGTGGAAGCCATCGCTCGAGAATCTCGTGTGGGGGG
CGTTGAAGCCGCGAGCCGCAACGGCCTAGGCCTCGACTCTGACAGGGTCA
TCGGGATGGCGGCGACGCCTGGGGCAGGCCTCGGCAGA
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