mRNA_S-dermatodea_contig8136.16333.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8136.16333.1
Unique NamemRNA_S-dermatodea_contig8136.16333.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8136.16333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8136contigS-dermatodea_contig8136:1174..2698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size662
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8136.16333.1prot_S-dermatodea_contig8136.16333.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8136 2282..2698 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925323.6372862-UTR-S-dermatodea_contig8136:1173..12721622925323.6372862-UTR-S-dermatodea_contig8136:1173..1272Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8136 1174..1272 +
1694079855.314405-UTR-S-dermatodea_contig8136:1173..12721694079855.314405-UTR-S-dermatodea_contig8136:1173..1272Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8136 1174..1272 +
1622925323.6472373-UTR-S-dermatodea_contig8136:2135..22811622925323.6472373-UTR-S-dermatodea_contig8136:2135..2281Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8136 2136..2281 +
1694079855.3239884-UTR-S-dermatodea_contig8136:2135..22811694079855.3239884-UTR-S-dermatodea_contig8136:2135..2281Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8136 2136..2281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925323.6568341-CDS-S-dermatodea_contig8136:2281..26981622925323.6568341-CDS-S-dermatodea_contig8136:2281..2698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8136 2282..2698 +
1694079855.33621-CDS-S-dermatodea_contig8136:2281..26981694079855.33621-CDS-S-dermatodea_contig8136:2281..2698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8136 2282..2698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8136.16333.1

>prot_S-dermatodea_contig8136.16333.1 ID=prot_S-dermatodea_contig8136.16333.1|Name=mRNA_S-dermatodea_contig8136.16333.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=139bp
MNHQRNSWRRIWLSAVSIARSAMACGDRLVPRASCAAIIHPYASSMMTAV
AASCEELSGKNISACGRYPSCGIRGIRRLMKTNSRWRLALLWLAQAILLG
AAWVGIGGRSNRRGSLASGGHAPALEVGKRDGAERVRVY
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mRNA from alignment at S-dermatodea_contig8136:1174..2698+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8136.16333.1 ID=mRNA_S-dermatodea_contig8136.16333.1|Name=mRNA_S-dermatodea_contig8136.16333.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1525bp|location=Sequence derived from alignment at S-dermatodea_contig8136:1174..2698+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGACACCTTAGTAGACAGAGGGTCGGAGTCTGGACCACGCACAGGGCCTG
AGCAGCGCCAACGGCGCACGACAACAAGCTACAAGCTACAAGCGCGAAGG
TGCGCACACCAGCTATAACTTAATAAGTGAATGAACTAACTCATCACGGT
GTTTTTGTGCGCCGCAAAAAATGAAGGGCAGACTACATGATACTGCAGTT
GTTGTGTTCAGCAGATTTGTCTGTCTGTTGTTTCCATGCAAAAGAAACAG
AGACCTAAGTCATATGGCTCTAATCTACGAGTATACGTCTGTATACTAAA
GCAGCAGCAGTCGTGTTTCACATGCTTCATTATATATACAAGTATGTGCA
TGCGATTCCCCAGCTCACGGCTGGCACACACTCCTCCTGCATGTACGGTA
TTAGCTCCAGGGAAACCGACACCTATAATATATTATGTAATAGCTTAAAT
AGGTTAATACTGTAGGTGGTACGTCCTATGTACACCCTCTCAGTATGGTA
CTGCTGTATGACATTCTGTATGTAGGTGCAGCAGTCTGGACTATATTAGA
AGAGCTGCAGCTGGCATCGCGTGACAAGAACAAAAGCACCATCCCCAAAT
CCCGTCGTGAGTCATCATCATGATGAATCGAAAGTGCCTGCGCAGGTCTC
TCACAGCAGAAAGAGCAGTGAAGAACACTTCGAGAACTTCTTCTTCTGTC
TGGTCCGTTGCCTGTGTCACACTTCGAGAACTTCTTCTTCTGTCTGGTCC
GTTGCCTGTGTCAAGTGTCAGGAACATGTTCCGCCGCCAAGTTGATCGAT
CATGCCGTCGCGCCGCCGCCCTCGTGCGAGAGCAACATAGTGAGCGAGGG
AGTTGCCTTCAGGTTGAGGGTGTGCATGTGACGCCTGCTCTCTTTATTTT
GCTGTTCTGCACCCCGACTTGCCTGCGCTGTGATCTCTCTCTCCTCTATG
CTCGTACGGCAGGGCCACGTCGTCGTAAAACCAACGCAAAAGAAAAGAAC
ATTTTTCCCTTGCATCATCGATCTCCGAAGATTCGCGGTCCCAAAGATCC
AACCGAACAAGATCCAAGCGTATCAAAGGGACGGGCGGCGCTGGTGACAC
ATCTATAGATGAATCACCAGCGGAATTCCTGGCGACGAATATGGCTGTCG
GCAGTATCCATCGCCAGGAGCGCTATGGCGTGCGGGGATAGGCTCGTGCC
CCGGGCTTCCTGTGCAGCAATAATACACCCGTATGCCAGCAGCATGATGA
CAGCAGTAGCGGCATCTTGCGAAGAGCTAAGCGGGAAAAATATCTCGGCC
TGTGGGAGGTATCCGAGTTGCGGTATCCGGGGTATCCGCCGGTTGATGAA
GACGAACAGCCGGTGGAGGCTGGCCTTGCTGTGGCTTGCTCAAGCCATAC
TACTTGGAGCTGCATGGGTAGGGATTGGTGGCAGATCGAATCGGCGTGGC
TCCTTGGCGAGCGGAGGACATGCGCCCGCGCTGGAGGTGGGCAAGCGCGA
CGGCGCCGAACGCGTTAGAGTGTAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8136:1174..2698+

>mRNA_S-dermatodea_contig8136.16333.1 ID=mRNA_S-dermatodea_contig8136.16333.1|Name=mRNA_S-dermatodea_contig8136.16333.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at S-dermatodea_contig8136:1174..2698+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAATCACCAGCGGAATTCCTGGCGACGAATATGGCTGTCGGCAGTATC
CATCGCCAGGAGCGCTATGGCGTGCGGGGATAGGCTCGTGCCCCGGGCTT
CCTGTGCAGCAATAATACACCCGTATGCCAGCAGCATGATGACAGCAGTA
GCGGCATCTTGCGAAGAGCTAAGCGGGAAAAATATCTCGGCCTGTGGGAG
GTATCCGAGTTGCGGTATCCGGGGTATCCGCCGGTTGATGAAGACGAACA
GCCGGTGGAGGCTGGCCTTGCTGTGGCTTGCTCAAGCCATACTACTTGGA
GCTGCATGGGTAGGGATTGGTGGCAGATCGAATCGGCGTGGCTCCTTGGC
GAGCGGAGGACATGCGCCCGCGCTGGAGGTGGGCAAGCGCGACGGCGCCG
AACGCGTTAGAGTGTACATGAATCACCAGCGGAATTCCTGGCGACGAATA
TGGCTGTCGGCAGTATCCATCGCCAGGAGCGCTATGGCGTGCGGGGATAG
GCTCGTGCCCCGGGCTTCCTGTGCAGCAATAATACACCCGTATGCCAGCA
GCATGATGACAGCAGTAGCGGCATCTTGCGAAGAGCTAAGCGGGAAAAAT
ATCTCGGCCTGTGGGAGGTATCCGAGTTGCGGTATCCGGGGTATCCGCCG
GTTGATGAAGACGAACAGCCGGTGGAGGCTGGCCTTGCTGTGGCTTGCTC
AAGCCATACTACTTGGAGCTGCATGGGTAGGGATTGGTGGCAGATCGAAT
CGGCGTGGCTCCTTGGCGAGCGGAGGACATGCGCCCGCGCTGGAGGTGGG
CAAGCGCGACGGCGCCGAACGCGTTAGAGTGTAC
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