mRNA_S-dermatodea_contig81147.16313.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81147.16313.1
Unique NamemRNA_S-dermatodea_contig81147.16313.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig81147.16313.1 vs. uniprot
Match: D7FTW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW4_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 8.740e-7
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    1 GALFLDITQGSYSLSNIKEIDPLEIGTLLGNIGG 102
            G L+LDI QG YS + I E+DPL+IGT LGNIGG
Sbjct:  165 GRLYLDIKQGDYSRTAIAEVDPLDIGTFLGNIGG 198
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81147.16313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTW4_ECTSI8.740e-767.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81147contigS-dermatodea_contig81147:232..333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925322.0309536-CDS-S-dermatodea_contig81147:231..3331622925322.0309536-CDS-S-dermatodea_contig81147:231..333Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81147 232..333 +
1694079854.1530223-CDS-S-dermatodea_contig81147:231..3331694079854.1530223-CDS-S-dermatodea_contig81147:231..333Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81147 232..333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81147.16313.1prot_S-dermatodea_contig81147.16313.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81147 232..333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81147.16313.1

>prot_S-dermatodea_contig81147.16313.1 ID=prot_S-dermatodea_contig81147.16313.1|Name=mRNA_S-dermatodea_contig81147.16313.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=34bp
GALFLDITQGSYSLSNIKEIDPLEIGTLLGNIGG
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mRNA from alignment at S-dermatodea_contig81147:232..333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81147.16313.1 ID=mRNA_S-dermatodea_contig81147.16313.1|Name=mRNA_S-dermatodea_contig81147.16313.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=102bp|location=Sequence derived from alignment at S-dermatodea_contig81147:232..333+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGCATTGTTCCTGGACATAACGCAGGGCTCCTACTCTCTTAGCAATAT
AAAGGAAATCGATCCGCTTGAGATCGGCACTCTACTGGGAAACATCGGAG
GT
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Coding sequence (CDS) from alignment at S-dermatodea_contig81147:232..333+

>mRNA_S-dermatodea_contig81147.16313.1 ID=mRNA_S-dermatodea_contig81147.16313.1|Name=mRNA_S-dermatodea_contig81147.16313.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=204bp|location=Sequence derived from alignment at S-dermatodea_contig81147:232..333+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGCATTGTTCCTGGACATAACGCAGGGCTCCTACTCTCTTAGCAATAT
AAAGGAAATCGATCCGCTTGAGATCGGCACTCTACTGGGAAACATCGGAG
GTGGGGCATTGTTCCTGGACATAACGCAGGGCTCCTACTCTCTTAGCAAT
ATAAAGGAAATCGATCCGCTTGAGATCGGCACTCTACTGGGAAACATCGG
AGGT
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